2Q1DX

2-keto-3-deoxy-d-arabinonate dehydratase complexed with magnesium and 2,5-dioxopentanoate
Total Genus 80

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
80
sequence length
291
structure length
281
Chain Sequence
MKLFRVVKRGYYISYAILDNSTIIRLDEDPIKALMRYSENKEVLGDRVTGIDYQSLLKSFQINDIRITKPIDPPEVWGSGISYNVAKILGKTIYEKVYDAVRPEIFFKATPNRCVGHGEAIAVRSDSEWTLPEPELAVVLDSNGKILGYTIMDDVSARDLEAENPLYLPQSKIYAGCCAFGPVIVTSDEIKNPYSLDITLKIVREGRVFFEGSVNTNKMRRKIEEQIQYLIRDNPIPDGTILTTGTAIVPGRDKGLKDEDIVEITISNIGTLITPVKKRRK

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYTII2 (184-187)S1 (2-8)TII5 (267-270)S6 (65-67)TII'1 (62-65)TIV1 (7-10)S3 (22-26)TI1 (18-21)AH1 (30-40)S15 (188-196)S13 (141-151)AH2 (53-59)TIV2 (48-51)O2 (59-61)S10 (114-119)S5 (61-62)S7 (76-80)TVIII2 (73-76)AH6 (233-241)TII3 (241-244)S14 (155-166)S17 (217-225)TIV3 (97-100)AH3 (103-109)TI3 (151-154)AH4 (168-173)3H2 (175-177)3H1 (121-123)S19 (270-276)S11 (124-125)S20 (280-288)TII1 (126-129)S12 (131-133)TI2 (134-137)TIV4 (137-140)AH5 (178-182)O3 (166-168)TII6 (276-279)3H3 (197-199)TIV7 (213-216)TI6 (262-265)S16 (207-214)TI4 (202-205)TVIII5 (229-232)3H4 (226-228)TII4 (247-250)S18 (250-253)TVIII1 (69-72)S4 (45-48)O1 (51-53)S8 (97-98)TI5 (261-264)TVIII3 (200-203)S2 (11-18)Updating...
connected with : NaN
molecule tags Lyase
source organism Sulfolobus solfataricus
publication title Structural insight into substrate binding and catalysis of a novel 2-keto-3-deoxy-D-arabinonate dehydratase illustrates common mechanistic features of the FAH superfamily.
pubmed doi rcsb
molecule keywords 2-keto-3-deoxy-D-arabinonate dehydratase
total genus 80
structure length 281
sequence length 291
ec nomenclature ec 4.2.1.141: 2-dehydro-3-deoxy-D-arabinonate dehydratase.
pdb deposition date 2007-05-24

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
X PF01557 FAA_hydrolase Fumarylacetoacetate (FAA) hydrolase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.330.40 Alpha Beta Roll Vcp-like ATPase; Chain A, domain 2 Vcp-like ATPase; Chain A, domain 2 2q1dX01
3.90.850.10 Alpha Beta Alpha-Beta Complex Fumarylacetoacetate hydrolase; domain 2 Fumarylacetoacetase-like, C-terminal domain 2q1dX02
1QQJA 1QCOA 3R6OA 2WQTA 5D2KA 5D2FA 1SAWA 3S52A 4MAQA 3V77A 2DFUA 1QCNA 1NR9A 3BQBA 2EB5A 4QKUA 2Q1CX 2EB4A 5D2IA 1HYOA 1I7OA 3LZKA 2EB6A 4DBHA 4DBFA 1SV6A 3RR6A 2HZYA 2Q1AX 1WZOA 1NKQA 2Q19X 5D2HA 5D2JA 1GTTA 2Q1DX 3QDFA 5D2GA 2Q18X 4PFZA
chains in the Genus database with same CATH superfamily
5CD1A 1QQJA 1QCOA 3FPRA 3QC8A 3ZJTA 2MM2A 2YUJA 1CZ5A 4KO8A 4KODA 1NR9A 1QDNA 2GFAA 3BQBA 2EB5A 2PWYA 2QQSA 3ZJVA 1HYOA 1I7OA 1QCSA 2QQRA 5CCBA 3RR6A 2HZYA 3LHDA 1O54A 2YVLA 5D2JA 5FTLA 5EPPA 2LW6A 2Q1DX 1GTTA 5FTJA 3FPUA 2GF7A 3TIWA 4AQ7A 4KDLA 3S52A 5C18A 4MAQA 3HU1A 5FTNA 5CCXA 4QKUA 5D6WA 2EB6A 4DBFA 2Q1AX 2Q19X 1NKQA 5D6XA 5EQJB 5DYGA 2Q18X 5B6CA 5GLFA 4ARCA 3QWZA 1ZC1A 3ZGZA 5D2FA 4FIBA 4AS1A 1WLFA 1QCNA 4RV0A 4KLNA 3QQ8A 5D6YA 2PJHB 5DYIA 1R7RA 2EB4A 2KY9A 3HU3A 3LGAA 5ERGB 3LZKA 4DBHA 4UC4A 3HU2A 3CF2A 1CR5A 5D2GA 4CQNA 3QQ7A 2XDPA 3R6OA 2WQTA 1S3SA 5D2KA 3MB5A 3ZJUA 2B25A 1SAWA 1I9GA 5FTKA 1CZ4A 3V77A 2DFUA 5C1BA 5FTMA 2Q1CX 5D2IA 3FPTA 1E32A 1SV6A 1WZOA 2MM0A 4ARIA 5D2HA 2JV2A 3QDFA 4PFZA 4KDIA
chains in the Genus database with same CATH topology
5CD1A 1QQJA 1QCOA 3FPRA 3QC8A 3ZJTA 2MM2A 2YUJA 1CZ5A 4KO8A 4KODA 1NR9A 1QDNA 2GFAA 3BQBA 2EB5A 2PWYA 2QQSA 3ZJVA 1HYOA 1I7OA 1QCSA 2QQRA 5CCBA 3RR6A 2HZYA 3LHDA 1O54A 2YVLA 5D2JA 5FTLA 5EPPA 2LW6A 2Q1DX 1GTTA 5FTJA 3FPUA 2GF7A 3TIWA 4AQ7A 4KDLA 3S52A 5C18A 4MAQA 3HU1A 5FTNA 5CCXA 4QKUA 5D6WA 2EB6A 4DBFA 2Q1AX 2Q19X 1NKQA 5D6XA 5EQJB 5DYGA 2Q18X 5B6CA 5GLFA 4ARCA 3QWZA 1ZC1A 3ZGZA 5D2FA 4FIBA 4AS1A 1WLFA 1QCNA 4RV0A 4KLNA 3QQ8A 5D6YA 2PJHB 5DYIA 1R7RA 2EB4A 2KY9A 3HU3A 3LGAA 5ERGB 3LZKA 4DBHA 4UC4A 3HU2A 3CF2A 1CR5A 5D2GA 4CQNA 3QQ7A 2XDPA 3R6OA 2WQTA 1S3SA 5D2KA 3MB5A 3ZJUA 2B25A 1SAWA 1I9GA 5FTKA 1CZ4A 3V77A 2DFUA 5C1BA 5FTMA 2Q1CX 5D2IA 3FPTA 1E32A 1SV6A 1WZOA 2MM0A 4ARIA 5D2HA 2JV2A 3QDFA 4PFZA 4KDIA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1QQJ A;  1QCO A;  3R6O A;  2WQT A;  5D2K A;  5D2F A;  1SAW A;  3S52 A;  4MAQ A;  3V77 A;  2DFU A;  1QCN A;  1NR9 A;  3BQB A;  2EB5 A;  4QKU A;  2Q1C X;  2EB4 A;  5D2I A;  1HYO A;  1I7O A;  3LZK A;  2EB6 A;  4DBH A;  4DBF A;  1SV6 A;  3RR6 A;  2HZY A;  2Q1A X;  1WZO A;  1NKQ A;  2Q19 X;  5D2H A;  5D2J A;  1GTT A;  2Q1D X;  3QDF A;  5D2G A;  2Q18 X;  4PFZ A; 
#chains in the Genus database with same CATH topology
 5CD1 A;  1QQJ A;  1QCO A;  3FPR A;  3QC8 A;  3ZJT A;  2MM2 A;  2YUJ A;  1CZ5 A;  4KO8 A;  4KOD A;  1NR9 A;  1QDN A;  2GFA A;  3BQB A;  2EB5 A;  2PWY A;  2QQS A;  3ZJV A;  1HYO A;  1I7O A;  1QCS A;  2QQR A;  5CCB A;  3RR6 A;  2HZY A;  3LHD A;  1O54 A;  2YVL A;  5D2J A;  5FTL A;  5EPP A;  2LW6 A;  2Q1D X;  1GTT A;  5FTJ A;  3FPU A;  2GF7 A;  3TIW A;  4AQ7 A;  4KDL A;  3S52 A;  5C18 A;  4MAQ A;  3HU1 A;  5FTN A;  5CCX A;  4QKU A;  5D6W A;  2EB6 A;  4DBF A;  2Q1A X;  2Q19 X;  1NKQ A;  5D6X A;  5EQJ B;  5DYG A;  2Q18 X;  5B6C A;  5GLF A;  4ARC A;  3QWZ A;  1ZC1 A;  3ZGZ A;  5D2F A;  4FIB A;  4AS1 A;  1WLF A;  1QCN A;  4RV0 A;  4KLN A;  3QQ8 A;  5D6Y A;  2PJH B;  5DYI A;  1R7R A;  2EB4 A;  2KY9 A;  3HU3 A;  3LGA A;  5ERG B;  3LZK A;  4DBH A;  4UC4 A;  3HU2 A;  3CF2 A;  1CR5 A;  5D2G A;  4CQN A;  3QQ7 A;  2XDP A;  3R6O A;  2WQT A;  1S3S A;  5D2K A;  3MB5 A;  3ZJU A;  2B25 A;  1SAW A;  1I9G A;  5FTK A;  1CZ4 A;  3V77 A;  2DFU A;  5C1B A;  5FTM A;  2Q1C X;  5D2I A;  3FPT A;  1E32 A;  1SV6 A;  1WZO A;  2MM0 A;  4ARI A;  5D2H A;  2JV2 A;  3QDF A;  4PFZ A;  4KDI A; 
#chains in the Genus database with same CATH homology
 5CD1 A;  1QQJ A;  1QCO A;  3FPR A;  3QC8 A;  3ZJT A;  2MM2 A;  2YUJ A;  1CZ5 A;  4KO8 A;  4KOD A;  1NR9 A;  1QDN A;  2GFA A;  3BQB A;  2EB5 A;  2PWY A;  2QQS A;  3ZJV A;  1HYO A;  1I7O A;  1QCS A;  2QQR A;  5CCB A;  3RR6 A;  2HZY A;  3LHD A;  1O54 A;  2YVL A;  5D2J A;  5FTL A;  5EPP A;  2LW6 A;  2Q1D X;  1GTT A;  5FTJ A;  3FPU A;  2GF7 A;  3TIW A;  4AQ7 A;  4KDL A;  3S52 A;  5C18 A;  4MAQ A;  3HU1 A;  5FTN A;  5CCX A;  4QKU A;  5D6W A;  2EB6 A;  4DBF A;  2Q1A X;  2Q19 X;  1NKQ A;  5D6X A;  5EQJ B;  5DYG A;  2Q18 X;  5B6C A;  5GLF A;  4ARC A;  3QWZ A;  1ZC1 A;  3ZGZ A;  5D2F A;  4FIB A;  4AS1 A;  1WLF A;  1QCN A;  4RV0 A;  4KLN A;  3QQ8 A;  5D6Y A;  2PJH B;  5DYI A;  1R7R A;  2EB4 A;  2KY9 A;  3HU3 A;  3LGA A;  5ERG B;  3LZK A;  4DBH A;  4UC4 A;  3HU2 A;  3CF2 A;  1CR5 A;  5D2G A;  4CQN A;  3QQ7 A;  2XDP A;  3R6O A;  2WQT A;  1S3S A;  5D2K A;  3MB5 A;  3ZJU A;  2B25 A;  1SAW A;  1I9G A;  5FTK A;  1CZ4 A;  3V77 A;  2DFU A;  5C1B A;  5FTM A;  2Q1C X;  5D2I A;  3FPT A;  1E32 A;  1SV6 A;  1WZO A;  2MM0 A;  4ARI A;  5D2H A;  2JV2 A;  3QDF A;  4PFZ A;  4KDI A; 
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