3HJYA

Structure of a functional ribonucleoprotein pseudouridine synthase bound to a substrate rna
Total Genus 77
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
77
sequence length
327
structure length
320
Chain Sequence
RILPADIKREVLIKDENAETNPDWGFPPEKRPIEMHIQFGVINLDKPPGPTSHEVVAWIKKILNLEKAGHGGTLDPKVSGVLPVALEKATRVVQALLPAGKEYVALMHLHGDVPEDKIIQVMKEFEGEIIQRPPLLRTRKVYYIEVLEIEGRDVLFRVGVEAGTYIRSLIHHIGLALGVGAHMSELRRTRSGPFKEDETLITLHDLVDYYYFWKEDGIEEYFRKAIQPMEKAVEHLPKVWIKDSAVAAVTHGADLAVPGIAKLHAGIKRGDLVAIMTLKDELVALGKAMMTSQEMLEKTKGIAVDVEKVFMPRDWYPKLW
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
Chord Diagram
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connected with : NaN
molecule tags Isomerase/rna
source organism Pyrococcus furiosus
publication title Structure of a functional ribonucleoprotein pseudouridine synthase bound to a substrate RNA
pubmed doi rcsb
molecule keywords pseudouridine synthase CBf5
total genus 77
structure length 320
sequence length 327
ec nomenclature ec 5.4.99.25: tRNA pseudouridine(55) synthase.
pdb deposition date 2009-05-22

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01472 PUA PUA domain
A PF01509 TruB_N TruB family pseudouridylate synthase (N terminal domain)
A PF08068 DKCLD DKCLD (NUC011) domain
A PF16198 TruB_C_2 tRNA pseudouridylate synthase B C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.130.70 Mainly Beta Roll Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 3hjyA01
3.30.2350.10 Alpha Beta 2-Layer Sandwich Pseudouridine synthase Pseudouridine synthase 3hjyA02
3UAIA 1V9FA 1ZE1A 1QYUA 3LWQA 1XPIA 1ZE2A 3ZV0C 2AUSA 1K8WA 2AB4A 3HJYA 3MQKA 2ISTA 3HAXA 3LWPA 3U28A 2HVYA 1KSVA 1ZL3A 3LWVA 2APOA 3LWRA 1SGVA 3LWOA 1R3FA 1V9KA 2I82A 1KSLA 1PRZA 4LGTA 2RFKA 3DH3A 2EY4A 4LABA 1R3EA 3HJWA 1KSKA
chains in the Genus database with same CATH superfamily
1UOYA 1QYUA 3M6UA 2AS0A 1Q7HA 1SB7A 1ZE2A 3ZV0C 3HJYA 2ISTA 1J2BA 2HVYA 1KSVA 1WXWA 3LWRA 1SGVA 1SQWA 1PRZA 4LGTA 2RFKA 2Q07A 1R3EA 4DMGA 1WXXA 3M6WA 1XPIA 1Z2ZA 1IT8A 1K8WA 2AB4A 3MQKA 3HAXA 3M6VA 3M6XA 1SZWA 3IUWA 1V9KA 1S04A 2E5OA 2J5VA 1IQ8A 1SI7A 3UAIA 1ZE1A 3LWQA 2CX0A 2KKUA 1TE7A 2AUSA 1WK2A 1IT7A 3LWPA 3LDFA 3D79A 4CI1B 1ZL3A 3LWVA 2ANEA 3M65A 3M4XA 3VSEA 2I82A 1ZBOA 2EY4A 4LABA 3DH3A 1T5YA 1V9FA 3LJCA 3C0KA 2DP9A 2J5TA 2P38A 2CWWA 4CI3B 4Q1TA 1ZS7A 3U28A 2Z0TA 2APOA 2B78A 2FRXA 3LWOA 1R3FA 4TZ4C 4CI2B 1KSLA 2CX1A 1XNEA 3HJWA 1KSKA
chains in the Genus database with same CATH topology
3UAIA 1V9FA 1UOYA 1ZE1A 1QYUA 3M6WA 3LWQA 3M6UA 1XPIA 1SB7A 1Z2ZA 1ZE2A 3ZV0C 2AUSA 1K8WA 2AB4A 3HJYA 3MQKA 2ISTA 3HAXA 3LWPA 1SI7A 3U28A 2HVYA 3M6VA 1KSVA 1ZL3A 3LWVA 2APOA 3LWRA 3M4XA 3M6XA 1SGVA 1SZWA 2FRXA 3LWOA 1R3FA 1V9KA 2I82A 1KSLA 1PRZA 4LGTA 2RFKA 3DH3A 2EY4A 4LABA 1R3EA 3HJWA 1KSKA
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 3UAI A;  1V9F A;  1ZE1 A;  1QYU A;  3LWQ A;  1XPI A;  1ZE2 A;  3ZV0 C;  2AUS A;  1K8W A;  2AB4 A;  3HJY A;  3MQK A;  2IST A;  3HAX A;  3LWP A;  3U28 A;  2HVY A;  1KSV A;  1ZL3 A;  3LWV A;  2APO A;  3LWR A;  1SGV A;  3LWO A;  1R3F A;  1V9K A;  2I82 A;  1KSL A;  1PRZ A;  4LGT A;  2RFK A;  3DH3 A;  2EY4 A;  4LAB A;  1R3E A;  3HJW A;  1KSK A; 
#chains in the Genus database with same CATH topology
 1UOY A;  1QYU A;  3M6U A;  2AS0 A;  1Q7H A;  1SB7 A;  1ZE2 A;  3ZV0 C;  3HJY A;  2IST A;  1J2B A;  2HVY A;  1KSV A;  1WXW A;  3LWR A;  1SGV A;  1SQW A;  1PRZ A;  4LGT A;  2RFK A;  2Q07 A;  1R3E A;  4DMG A;  1WXX A;  3M6W A;  1XPI A;  1Z2Z A;  1IT8 A;  1K8W A;  2AB4 A;  3MQK A;  3HAX A;  3M6V A;  3M6X A;  1SZW A;  3IUW A;  1V9K A;  1S04 A;  2E5O A;  2J5V A;  1IQ8 A;  1SI7 A;  3UAI A;  1ZE1 A;  3LWQ A;  2CX0 A;  2KKU A;  1TE7 A;  2AUS A;  1WK2 A;  1IT7 A;  3LWP A;  3LDF A;  3D79 A;  4CI1 B;  1ZL3 A;  3LWV A;  2ANE A;  3M65 A;  3M4X A;  3VSE A;  2I82 A;  1ZBO A;  2EY4 A;  4LAB A;  3DH3 A;  1T5Y A;  1V9F A;  3LJC A;  3C0K A;  2DP9 A;  2J5T A;  2P38 A;  2CWW A;  4CI3 B;  4Q1T A;  1ZS7 A;  3U28 A;  2Z0T A;  2APO A;  2B78 A;  2FRX A;  3LWO A;  1R3F A;  4TZ4 C;  4CI2 B;  1KSL A;  2CX1 A;  1XNE A;  3HJW A;  1KSK A; 
#chains in the Genus database with same CATH homology
 3UAI A;  1V9F A;  1UOY A;  1ZE1 A;  1QYU A;  3M6W A;  3LWQ A;  3M6U A;  1XPI A;  1SB7 A;  1Z2Z A;  1ZE2 A;  3ZV0 C;  2AUS A;  1K8W A;  2AB4 A;  3HJY A;  3MQK A;  2IST A;  3HAX A;  3LWP A;  1SI7 A;  3U28 A;  2HVY A;  3M6V A;  1KSV A;  1ZL3 A;  3LWV A;  2APO A;  3LWR A;  3M4X A;  3M6X A;  1SGV A;  1SZW A;  2FRX A;  3LWO A;  1R3F A;  1V9K A;  2I82 A;  1KSL A;  1PRZ A;  4LGT A;  2RFK A;  3DH3 A;  2EY4 A;  4LAB A;  1R3E A;  3HJW A;  1KSK A;
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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