The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
120
|
sequence length |
318
|
structure length |
318
|
Chain Sequence |
QVLRGTVTDFPGFDERADAETLRKAMKGLGTDEESILTLLTSRSNAQRQEISAAFKTLFGRDLLDDLKSELTGKFEKLIVALMKPSRLYDAYELKHALKGAGTNEKVLTEIIASRTPEELRAIKQVYEEEYGSSLEDDVVGDTSGYYQRMLVVLLQANRDPDAGIDEAQVEQDAQALFQAGELKWGTDEEKFITIFGTRSVSHLRKVFDKYMTISGFQIEETIDRETSGNLEQLLLAVVKSIRSIPAYLAETLYYAMKGAGTDDHTLIRVMVSRSEIDLFNIRKEFRKNFATSLYSMIKGDTSGDYKKALLLLCGEDD
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Crystal and molecular structure of human annexin V after refinement. Implications for structure, membrane binding and ion channel formation of the annexin family of proteins.
pubmed doi rcsb |
| molecule tags |
Calcium/phospholipid binding
|
| source organism |
Homo sapiens
|
| molecule keywords |
ANNEXIN V
|
| total genus |
120
|
| structure length |
318
|
| sequence length |
318
|
| chains with identical sequence |
B
|
| ec nomenclature | |
| pdb deposition date | 1991-10-17 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF00191 | Annexin | Annexin |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Alpha | Orthogonal Bundle | Annexin V; domain 1 | Annexin | ||
| Mainly Alpha | Orthogonal Bundle | Annexin V; domain 1 | Annexin | ||
| Mainly Alpha | Orthogonal Bundle | Annexin V; domain 1 | Annexin | ||
| Mainly Alpha | Orthogonal Bundle | Annexin V; domain 1 | Annexin |
#chains in the Genus database with same CATH superfamily 1ANX A; 2IE7 A; 1BC1 A; 2Q4C A; 1I4A A; 1BC3 A; 1AXN A; 2RAN A; 1ANW A; 1BC0 A; 1A8A A; 4HRE A; 2II2 A; 1DK5 A; 1AEI A; 2IE6 A; 2ZOC A; 1ANN A; 1AOW A; 1ALA A; 1AVC A; 1W45 A; 4EVH A; 2XO2 A; 4MDU A; 1AVH A; 1YJ0 A; 1G5N A; 2IIC A; 2H0M A; 2XO3 A; 1HVG A; 4X9P A; 2H0K A; 1YII A; 1BCW A; 1BO9 A; 1W7B A; 1N42 A; 1HAK A; 4EVF A; 1HVE A; 1HVD A; 1HVF A; 1N44 A; 2H0L A; 2HYU A; 1DM5 A; 1XJL A; 1BCY A; 1N00 A; 1N41 A; 1M9I A; 1W3W A; 1A8B A; 1BCZ A; 1SAV A; 2HYV A; 2ZHI A; 4MDV A; 1AVR A; 1YCN A; 3BRX A; 2HYW A; 2ZHJ A; 1MCX A; 1AII A; 1HM6 A; #chains in the Genus database with same CATH topology 3L8N A; 1R8M E; 1XSZ A; 1A8A A; 2II2 A; 3AJC A; 1DK5 A; 2QEZ A; 1ANN A; 1AOW A; 1AVC A; 2VXG A; 1W45 A; 1PBV A; 1AVH A; 1YGM A; 4Q2S A; 1HVE A; 1N44 A; 1RE0 B; 2R0D A; 2XO3 A; 1BCY A; 1N41 A; 4MDV A; 1A8B A; 1BCZ A; 1BC9 A; 1SAV A; 2HYV A; 3BRX A; 2HSN A; 4C7P A; 1UPT B; 4L5M A; 1I4A A; 4KMU X; 1AXN A; 2RAN A; 1BC0 A; 1R8Q E; 4KN4 X; 1R8S E; 2ZOC A; 3AO0 A; 4JMO A; 2XO2 A; 4C0A A; 3ABQ A; 1G5N A; 2IIC A; 3ANY A; 4Z21 A; 4X9P A; 3ABR A; 4D7Q A; 4EVF A; 1R4A E; 1HVD A; 1Q8D A; 1C1K A; 4FHR B; 1M9I A; 1XT0 B; 2ZHI A; 3LTL A; 1AVR A; 1QC7 A; 2OY9 A; 3ABO A; 1S9D E; 4JMI A; 3HJL A; 4EVH A; 3SOH B; 1ALA A; 4A4P A; 1YJ0 A; 2K6X A; 2H0M A; 2H0K A; 1BCW A; 1KU1 A; 4JK1 X; 1N42 A; 1LKV X; 1HVF A; 1XJL A; 1N00 A; 4FQ0 C; 3USY A; 2HYW A; 1AII A; 2IE6 A; 1ANX A; 2IE7 A; 1BC1 A; 2Q4C A; 3ABS A; 1BC3 A; 3USW A; 1ANW A; 4HRE A; 4D7R A; 1AEI A; 4MDU A; 2R09 A; 4OIY A; 1HVG A; 4JWL A; 1YII A; 1BO9 A; 1W7B A; 3TW5 A; 1HAK A; 2H0L A; 2HYU A; 1DM5 A; 1W3W A; 4KN7 X; 4JXH A; 1YCN A; 2ZHJ A; 3SWV A; 1MCX A; 1HM6 A; #chains in the Genus database with same CATH homology 1ANX A; 2IE7 A; 1BC1 A; 2Q4C A; 1I4A A; 1BC3 A; 1AXN A; 2RAN A; 1ANW A; 1BC0 A; 1A8A A; 4HRE A; 2II2 A; 1DK5 A; 1AEI A; 2IE6 A; 2ZOC A; 1ANN A; 1AOW A; 1ALA A; 1AVC A; 1W45 A; 4EVH A; 2XO2 A; 4MDU A; 1AVH A; 1YJ0 A; 1G5N A; 2IIC A; 2H0M A; 2XO3 A; 1HVG A; 4X9P A; 2H0K A; 1YII A; 1BCW A; 1BO9 A; 1W7B A; 1N42 A; 1HAK A; 4EVF A; 1HVE A; 1HVD A; 1HVF A; 1N44 A; 2H0L A; 2HYU A; 1DM5 A; 1XJL A; 1BCY A; 1N00 A; 1N41 A; 1M9I A; 1W3W A; 1A8B A; 1BCZ A; 1SAV A; 2HYV A; 2ZHI A; 4MDV A; 1AVR A; 1YCN A; 3BRX A; 2HYW A; 2ZHJ A; 1MCX A; 1AII A; 1HM6 A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
