1XSZA

The structure of ralf
Total Genus 129
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
129
sequence length
356
structure length
356
Chain Sequence
GASHPEIEKAQREIIEAFNAKPKNGINKIKEICEQYKISPNEEIAEFFHQQRKNLDLEAVGDYLSSPEAENQQVLKAFTSQMNFNGQSFVEGLRTFLKTFKLPGEAQKIDRLVQSFSGAYFQQNPDVVSNADAAYLLAFQTIMLNTDLHNPSIPEKNKMTVDGLKRNLRGGNNGGDFDAKFLEELYSEIKAKPFELNFVKTSPGYELTSTTLNKDSTFKKLDSFLHSTDVNINTVFPGIGDNVKTTVDQPKSWLSFFTGYKGTITLTDNKTSAQATIQVYTPNIFSKWLFGEQPRVIIQPGQTKESIDLAAKAAADFSSPVKNFKATYDYEVGDLIKAYDNQKKLITIERNLALKA
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Signaling protein
source organism Legionella pneumophila
publication title The structure of RalF, an ADP-ribosylation factor guanine nucleotide exchange factor from Legionella pneumophila, reveals the presence of a cap over the active site
pubmed doi rcsb
molecule keywords guanine nucleotide exchange protein
total genus 129
structure length 356
sequence length 356
chains with identical sequence B
ec nomenclature
pdb deposition date 2004-10-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01369 Sec7 Sec7 domain
A PF18248 RalF_SCD RalF C-terminal Sec-7 capping domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.220.20 Mainly Alpha Orthogonal Bundle Annexin V; domain 1 Annexin V; domain 1 1xszA01
1.10.1000.11 Mainly Alpha Orthogonal Bundle Arf Nucleotide-binding Site Opener; domain 2 Arf Nucleotide-binding Site Opener,domain 2 1xszA02
3.30.310.140 Alpha Beta 2-Layer Sandwich TATA-Binding Protein sec7 domains 1xszA03
4C7PA 4JWLA 1XSZA 3SWVA 3L8NA 4L5MA 1RE0B 1R8QE 4D7QA 4JMOA 1BC9A 4A4PA 1S9DE 4Z21A 4OIYA 1PBVA 2R09A 1R8SE 3LTLA 4D7RA 4JMIA 1R8ME 2R0DA 4C0AA 1XT0B 4JXHA 1KU1A
chains in the Genus database with same CATH superfamily
2FGTA 4EAGA 3CWSA 2R5XA 3OSTA 1BC9A 2V9JA 3NA5A 1YGMA 5BMPA 1C9BB 3D4VA 5HSHA 1VTOA 3PDKA 1C47A 2MZ8A 1SAVA 4JMIA 3C04A 2YA3A 4TPSA 1KYUA 5JMVD 4QG5A 2JOIA 3HS9A 3L8NA 2XO3A 2PWWA 3CW7A 2NWVA 1N3AA 2OOYA 4EVFA 2JPIA 5KL0A 5IYCP 1W7BA 1C1KA 3T4NA 2D0BA 2IE7A 2LAEA 4EALA 3CVTA 1TBAB 1R4XA 3VN5A 1ANNA 1QTPA 2HZSA 1UT7A 3ABOA 1I4AA 4RODB 2I5WA 4MDVA 4A4PA 1BO9A 1B9KA 4B0AA 5IYDP 3AO0A 4HREA 1JDYA 1QNAA 2QEZA 3BRXA 1R8ME 1KY7A 1K35A 1XT0B 1MP9A 2DKAA 2ZFDB 1NVPA 4JWLA 1N41A 4MDUA 2HKPA 4JMOA 4EJZA 1YQKA 1VTLE 1A8BA 1MPGA 2D0AA 2R09A 1YQMA 3KRMA 1N44A 3EIKA 2QR1A 3I0WA 2Y8LA 1YCNA 1AVHA 3USYA 3ASMA 4X9PA 1RE0B 2HYWA 1AIIA 1QNEA 2NOBA 1QN5A 1AEIA 3TE5A 1YQRA 1NGMA 1BC1A 1G5NA 2FKMX 2RANA 2Z0FA 3CVSA 2Z8UA 3SOHB 1XSZA 3OSEA 1EUVA 4L5MA 2NOHA 2IV8A 1YJ0A 1KFQA 1ALAA 2V8QA 2HYUA 5JN5A 1QN6A 2VJ0A 3UW2A 2FUVA 4EAJA 4D7RA 2DKCA 1DK5A 1QC7A 3ENCA 1HVFA 4C7PA 4WZSD 1W80A 2HL9A 3ULXA 2K6XA 1RM1A 1BCWA 2XHIA 1J3MA 4Q2SA 1N42A 1BCYA 4Z21A 4OIYA 2ZHJA 4FQ0C 1C4GA 2HSNA 1HVEA 1PCZA 2OOXA 1YTFA 4IL8A 3ENOC 1PCJX 3ABQA 1YQLA 3TW5A 1FN7A 3HJLA 3USWA 1LWYA 1DIZA 2O3OA 1QN9A 1V5SA 3TDHA 1HVDA 4JK1X 3DPUA 1Q8DA 1W45A 4ROEB 1QNCA 1TBPA 1LWVA 1LKVX 3F10A 4Q11A 5AN4A 1PVSA 4WXAA 1UT4A 2II2A 1KFIA 3EAYA 1XJLA 1PZDA 1D3UA 2NVMA 3CWTA 2JHJA 4JXHA 3CWUA 2QREA 3I3WA 1DM5A 1QTSA 1EBMA 3KTUA 3SNSA 1CDWA 3N89A 1HAKA 2QRDA 1JFIC 2H0MA 3I0XA 3ABRA 1HU0A 2Y8QA 3OGDA 2XO2A 4KMUX 1NH2A 3OH9A 4C0AA 2H4LX 1W3WA 1ANXA 1AVCA 1AVRA 3IH7A 3H1ZA 1VOLB 1AISA 3F0ZA 2QRCA 4KN4X 2HZMA 1P5DX 2HL8A 2Q4CA 5F9CA 1KO9A 1P5GX 3SWVA 2ZHIA 1AXNA 1R8QE 3OC3C 3RPJA 4D7QA 2FKFA 2IV9A 2NOLA 4FHRB 1R8SE 4EVHA 5IYBP 3ABSA 1T6AA 4CFFA 1QNBA 1QN7A 1LXTA 2MJ7A 4MRQA 2YH5A 2D0CA 5BMNA 1QN4A 4ROCB 4DULA 4EAKA 2NOZA 1K2YX 3OH6A 4PY5A 1PBVA 1YIIA 2IICA 1BCZA 4I8OA 1N39A 1R4AE 1M9IA 1UL7A 2F7LA 3AJCA 1WQAA 1AOWA 1M3QA 1PCMX 1VOKA 1QN8A 1M3HA 1ANWA 1MCXA 3OCIA 1KYFA 4EAIA 1Q9UA 4HJHA 2ZOCA 3PMGA 2NOIA 4BJUA 2R0DA 1E42A 1QN3A 3BKQX 3OSMA 4KN7X 1TUOA 2NOEA 3OLPA 1HVGA 1A8AA 1BC0A 2EHBD 4WX8A 2IE6A 2H5AX 3LTLA 2DKDA 1LWWA 1BC3A 1HM6A 2NLVA 1N00A 2QLVA 1KU1A 2HYVA 3ANYA 2H0LA 1YTBA 4EJYA 1KY6A 1WJWA 1KYDA 1N3CA 3RSMA 2H0KA 3DPTA 5EPCA 2NOFA 3HS8A 1M5Q1 3CWAA 2G30A 1S9DE 2V92A 1VKLA 2JHNA 3D7QA 2VXGA 2OY9A 1TGHA 1UPTB
chains in the Genus database with same CATH topology
1Q8DA 4C7PA 3SOHB 3USYA 4JWLA 1XSZA 3SWVA 3L8NA 4KN7X 4L5MA 1RE0B 1R8QE 2K6XA 1LKVX 4D7QA 4JMOA 1BC9A 4A4PA 1S9DE 3TW5A 4OIYA 4Z21A 3HJLA 3USWA 4FHRB 1PBVA 2R09A 4FQ0C 1R8SE 3LTLA 4D7RA 4KMUX 4JMIA 1R8ME 1QC7A 2R0DA 2HSNA 4C0AA 4KN4X 1XT0B 4JK1X 3AJCA 4JXHA 1KU1A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4C7P A;  4JWL A;  1XSZ A;  3SWV A;  3L8N A;  4L5M A;  1RE0 B;  1R8Q E;  4D7Q A;  4JMO A;  1BC9 A;  4A4P A;  1S9D E;  4Z21 A;  4OIY A;  1PBV A;  2R09 A;  1R8S E;  3LTL A;  4D7R A;  4JMI A;  1R8M E;  2R0D A;  4C0A A;  1XT0 B;  4JXH A;  1KU1 A; 
#chains in the Genus database with same CATH topology
 2FGT A;  4EAG A;  3CWS A;  2R5X A;  3OST A;  1BC9 A;  2V9J A;  3NA5 A;  1YGM A;  5BMP A;  1C9B B;  3D4V A;  5HSH A;  1VTO A;  3PDK A;  1C47 A;  2MZ8 A;  1SAV A;  4JMI A;  3C04 A;  2YA3 A;  4TPS A;  1KYU A;  5JMV D;  4QG5 A;  2JOI A;  3HS9 A;  3L8N A;  2XO3 A;  2PWW A;  3CW7 A;  2NWV A;  1N3A A;  2OOY A;  4EVF A;  2JPI A;  5KL0 A;  5IYC P;  1W7B A;  1C1K A;  3T4N A;  2D0B A;  2IE7 A;  2LAE A;  4EAL A;  3CVT A;  1TBA B;  1R4X A;  3VN5 A;  1ANN A;  1QTP A;  2HZS A;  1UT7 A;  3ABO A;  1I4A A;  4ROD B;  2I5W A;  4MDV A;  4A4P A;  1BO9 A;  1B9K A;  4B0A A;  5IYD P;  3AO0 A;  4HRE A;  1JDY A;  1QNA A;  2QEZ A;  3BRX A;  1R8M E;  1KY7 A;  1K35 A;  1XT0 B;  1MP9 A;  2DKA A;  2ZFD B;  1NVP A;  4JWL A;  1N41 A;  4MDU A;  2HKP A;  4JMO A;  4EJZ A;  1YQK A;  1VTL E;  1A8B A;  1MPG A;  2D0A A;  2R09 A;  1YQM A;  3KRM A;  1N44 A;  3EIK A;  2QR1 A;  3I0W A;  2Y8L A;  1YCN A;  1AVH A;  3USY A;  3ASM A;  4X9P A;  1RE0 B;  2HYW A;  1AII A;  1QNE A;  2NOB A;  1QN5 A;  1AEI A;  3TE5 A;  1YQR A;  1NGM A;  1BC1 A;  1G5N A;  2FKM X;  2RAN A;  2Z0F A;  3CVS A;  2Z8U A;  3SOH B;  1XSZ A;  3OSE A;  1EUV A;  4L5M A;  2NOH A;  2IV8 A;  1YJ0 A;  1KFQ A;  1ALA A;  2V8Q A;  2HYU A;  5JN5 A;  1QN6 A;  2VJ0 A;  3UW2 A;  2FUV A;  4EAJ A;  4D7R A;  2DKC A;  1DK5 A;  1QC7 A;  3ENC A;  1HVF A;  4C7P A;  4WZS D;  1W80 A;  2HL9 A;  3ULX A;  2K6X A;  1RM1 A;  1BCW A;  2XHI A;  1J3M A;  4Q2S A;  1N42 A;  1BCY A;  4Z21 A;  4OIY A;  2ZHJ A;  4FQ0 C;  1C4G A;  2HSN A;  1HVE A;  1PCZ A;  2OOX A;  1YTF A;  4IL8 A;  3ENO C;  1PCJ X;  3ABQ A;  1YQL A;  3TW5 A;  1FN7 A;  3HJL A;  3USW A;  1LWY A;  1DIZ A;  2O3O A;  1QN9 A;  1V5S A;  3TDH A;  1HVD A;  4JK1 X;  3DPU A;  1Q8D A;  1W45 A;  4ROE B;  1QNC A;  1TBP A;  1LWV A;  1LKV X;  3F10 A;  4Q11 A;  5AN4 A;  1PVS A;  4WXA A;  1UT4 A;  2II2 A;  1KFI A;  3EAY A;  1XJL A;  1PZD A;  1D3U A;  2NVM A;  3CWT A;  2JHJ A;  4JXH A;  3CWU A;  2QRE A;  3I3W A;  1DM5 A;  1QTS A;  1EBM A;  3KTU A;  3SNS A;  1CDW A;  3N89 A;  1HAK A;  2QRD A;  1JFI C;  2H0M A;  3I0X A;  3ABR A;  1HU0 A;  2Y8Q A;  3OGD A;  2XO2 A;  4KMU X;  1NH2 A;  3OH9 A;  4C0A A;  2H4L X;  1W3W A;  1ANX A;  1AVC A;  1AVR A;  3IH7 A;  3H1Z A;  1VOL B;  1AIS A;  3F0Z A;  2QRC A;  4KN4 X;  2HZM A;  1P5D X;  2HL8 A;  2Q4C A;  5F9C A;  1KO9 A;  1P5G X;  3SWV A;  2ZHI A;  1AXN A;  1R8Q E;  3OC3 C;  3RPJ A;  4D7Q A;  2FKF A;  2IV9 A;  2NOL A;  4FHR B;  1R8S E;  4EVH A;  5IYB P;  3ABS A;  1T6A A;  4CFF A;  1QNB A;  1QN7 A;  1LXT A;  2MJ7 A;  4MRQ A;  2YH5 A;  2D0C A;  5BMN A;  1QN4 A;  4ROC B;  4DUL A;  4EAK A;  2NOZ A;  1K2Y X;  3OH6 A;  4PY5 A;  1PBV A;  1YII A;  2IIC A;  1BCZ A;  4I8O A;  1N39 A;  1R4A E;  1M9I A;  1UL7 A;  2F7L A;  3AJC A;  1WQA A;  1AOW A;  1M3Q A;  1PCM X;  1VOK A;  1QN8 A;  1M3H A;  1ANW A;  1MCX A;  3OCI A;  1KYF A;  4EAI A;  1Q9U A;  4HJH A;  2ZOC A;  3PMG A;  2NOI A;  4BJU A;  2R0D A;  1E42 A;  1QN3 A;  3BKQ X;  3OSM A;  4KN7 X;  1TUO A;  2NOE A;  3OLP A;  1HVG A;  1A8A A;  1BC0 A;  2EHB D;  4WX8 A;  2IE6 A;  2H5A X;  3LTL A;  2DKD A;  1LWW A;  1BC3 A;  1HM6 A;  2NLV A;  1N00 A;  2QLV A;  1KU1 A;  2HYV A;  3ANY A;  2H0L A;  1YTB A;  4EJY A;  1KY6 A;  1WJW A;  1KYD A;  1N3C A;  3RSM A;  2H0K A;  3DPT A;  5EPC A;  2NOF A;  3HS8 A;  1M5Q 1;  3CWA A;  2G30 A;  1S9D E;  2V92 A;  1VKL A;  2JHN A;  3D7Q A;  2VXG A;  2OY9 A;  1TGH A;  1UPT B; 
#chains in the Genus database with same CATH homology
 1Q8D A;  4C7P A;  3SOH B;  3USY A;  4JWL A;  1XSZ A;  3SWV A;  3L8N A;  4KN7 X;  4L5M A;  1RE0 B;  1R8Q E;  2K6X A;  1LKV X;  4D7Q A;  4JMO A;  1BC9 A;  4A4P A;  1S9D E;  3TW5 A;  4OIY A;  4Z21 A;  3HJL A;  3USW A;  4FHR B;  1PBV A;  2R09 A;  4FQ0 C;  1R8S E;  3LTL A;  4D7R A;  4KMU X;  4JMI A;  1R8M E;  1QC7 A;  2R0D A;  2HSN A;  4C0A A;  4KN4 X;  1XT0 B;  4JK1 X;  3AJC A;  4JXH A;  1KU1 A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...