1XSZA

The structure of ralf
Total Genus 129
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
129
sequence length
356
structure length
356
Chain Sequence
b'GASHPEIEKAQREIIEAFNAKPKNGINKIKEICEQYKISPNEEIAEFFHQQRKNLDLEAVGDYLSSPEAENQQVLKAFTSQMNFNGQSFVEGLRTFLKTFKLPGEAQKIDRLVQSFSGAYFQQNPDVVSNADAAYLLAFQTIMLNTDLHNPSIPEKNKMTVDGLKRNLRGGNNGGDFDAKFLEELYSEIKAKPFELNFVKTSPGYELTSTTLNKDSTFKKLDSFLHSTDVNINTVFPGIGDNVKTTVDQPKSWLSFFTGYKGTITLTDNKTSAQATIQVYTPNIFSKWLFGEQPRVIIQPGQTKESIDLAAKAAADFSSPVKNFKATYDYEVGDLIKAYDNQKKLITIERNLALKA'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title The structure of RalF, an ADP-ribosylation factor guanine nucleotide exchange factor from Legionella pneumophila, reveals the presence of a cap over the active site
pubmed doi rcsb
molecule keywords guanine nucleotide exchange protein
source organism Legionella pneumophila
molecule tags Signaling protein
total genus 129
structure length 356
sequence length 356
chains with identical sequence B
ec nomenclature
pdb deposition date 2004-10-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01369 Sec7 Sec7 domain
A PF18248 RalF_SCD RalF C-terminal Sec-7 capping domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.220.20 Mainly Alpha Orthogonal Bundle Annexin V; domain 1 Annexin V; domain 1 1xszA01
1.10.1000.11 Mainly Alpha Orthogonal Bundle Arf Nucleotide-binding Site Opener; domain 2 Arf Nucleotide-binding Site Opener,domain 2 1xszA02
3.30.310.140 Alpha Beta 2-Layer Sandwich TATA-Binding Protein sec7 domains 1xszA03
4Z21A 4C7PA 4A4PA 4JXHA 1R8ME 1BC9A 2R09A 3L8NA 4JMIA 4JMOA 1R8SE 4L5MA 1PBVA 3LTLA 4JWLA 4C0AA 1KU1A 4D7QA 2R0DA 4D7RA 1XT0B 1XSZA 1RE0B 4OIYA 1S9DE 1R8QE 3SWVA
chains in the Genus database with same CATH superfamily
2D0AA 2NLVA 1QN8A 1AISA 1N3CA 1ALAA 1P5DX 2IV8A 3L8NA 2Q4CA 2NOEA 5IYDP 1BCZA 1KU1A 1VTOA 1DM5A 2NOZA 1HAKA 1TUOA 1QN3A 1UL7A 1LKVX 1YQMA 4C7PA 1EUVA 2V9JA 4Q11A 4WZSD 1BCWA 3BKQX 3HS8A 1BCYA 2MZ8A 2YH5A 4EALA 2ZOCA 4JK1X 1HM6A 1C9BB 2HYWA 2EHBD 5JN5A 4B0AA 2FUVA 1HU0A 1BC1A 3OSMA 1LWVA 1PZDA 3TE5A 3ENCA 1VTLE 1M5Q1 3N89A 2H4LX 1N42A 1M3HA 1PBVA 1V5SA 4KN7X 1R4XA 3VN5A 2NOFA 1TBAB 2DKAA 1MPGA 1TBPA 1QNCA 1DK5A 1BC9A 4DULA 1FN7A 1M3QA 1BO9A 1HVDA 1D3UA 2XHIA 2Z0FA 4JWLA 3OH9A 1LWYA 3CWSA 1E42A 5JMVD 2R5XA 4OIYA 1J3MA 2NOBA 3EIKA 1B9KA 1N00A 1QN5A 4Z21A 5AN4A 2QEZA 4HREA 4ROCB 4QG5A 1UT7A 1AIIA 1C1KA 4JMIA 1JDYA 3NA5A 3CWAA 2JHJA 3RSMA 1JFIC 3I0XA 4FHRB 1RM1A 3BRXA 1QN7A 2NWVA 2H0MA 2IV9A 3ANYA 2Y8QA 2QRDA 1QNEA 2JHNA 1N39A 1R8SE 3OH6A 4EAGA 1WQAA 4FQ0C 2R0DA 3C04A 1VKLA 4I8OA 4BJUA 4EAKA 2NOLA 1AEIA 1MCXA 2NVMA 1YCNA 2HL8A 3OLPA 1NGMA 3ASMA 1YQRA 1R4AE 1QNBA 2F7LA 4WX8A 1YTBA 4EVFA 3OSTA 1T6AA 1HVEA 2QRCA 4JMOA 4L5MA 1KO9A 4ROEB 4Q2SA 4EAJA 1VOKA 1KY7A 1YJ0A 4KMUX 1YQLA 4HJHA 3I0WA 3PMGA 2H0KA 1KY6A 3DPTA 1KYDA 1EBMA 1QTSA 3ULXA 2MJ7A 2PWWA 3USYA 2HKPA 2JOIA 1LWWA 1R8ME 2IE7A 3AJCA 5F9CA 1W80A 1K35A 2ZHIA 1K2YX 5IYBP 2DKDA 2FKFA 2H0LA 4RODB 5HSHA 2JPIA 2YA3A 3CVTA 2QREA 1R8QE 1PCMX 1Q8DA 2V8QA 2FGTA 2FKMX 3USWA 1QTPA 1SAVA 2QLVA 2OY9A 2H5AX 1CDWA 1A8AA 2VJ0A 2LAEA 3PDKA 3RPJA 4C0AA 3F10A 2HZSA 2HSNA 4D7QA 3IH7A 2Z8UA 1AXNA 2DKCA 2IE6A 4X9PA 1YQKA 4JXHA 4WXAA 4MRQA 1W3WA 2G30A 1QC7A 2D0BA 3AO0A 1HVFA 1WJWA 5EPCA 3ENOC 1YIIA 1RE0B 1W7BA 1AVHA 2HYUA 2O3OA 3HS9A 2Y8LA 3TW5A 3ABSA 1A8BA 2R09A 2IICA 1PCZA 2QR1A 1KYUA 1KYFA 1XJLA 1AVRA 4D7RA 3DPUA 1W45A 2D0CA 2HYVA 3EAYA 3OCIA 5BMNA 3ABQA 3F0ZA 1QN4A 4CFFA 1UPTB 3CWUA 3H1ZA 3OSEA 1C4GA 3ABRA 1P5GX 4EAIA 1KFQA 3SOHB 1M9IA 3KTUA 2K6XA 5IYCP 1XT0B 1ANWA 3D7QA 4IL8A 1YGMA 1NH2A 1BC3A 4EVHA 1DIZA 1N44A 4KN4X 4TPSA 1YTFA 3UW2A 3I3WA 2RANA 1VOLB 3TDHA 1KFIA 4PY5A 1ANXA 2ZFDB 1S9DE 1G5NA 3CW7A 3CVSA 2OOXA 2HL9A 2HZMA 1UT4A 1NVPA 4EJZA 3T4NA 1PCJX 3ABOA 2OOYA 5KL0A 1AVCA 1I4AA 1Q9UA 1QN9A 5BMPA 1PVSA 3D4VA 2ZHJA 4A4PA 1C47A 1LXTA 1QNAA 1AOWA 1ANNA 2II2A 3LTLA 1QN6A 2NOHA 3OC3C 2XO2A 4EJYA 1N41A 1BC0A 2NOIA 2V92A 1N3AA 2I5WA 3SNSA 3HJLA 3KRMA 1MP9A 2XO3A 3CWTA 4MDUA 1TGHA 2VXGA 1HVGA 1XSZA 3OGDA 4MDVA 3SWVA
chains in the Genus database with same CATH topology
1LKVX 4Z21A 3TW5A 4C7PA 4A4PA 3USYA 4JXHA 3USWA 1R8ME 1BC9A 2R09A 3HJLA 3L8NA 3AJCA 4JMIA 3SOHB 4JMOA 3SWVA 1R8SE 1QC7A 1PBVA 4KN4X 4L5MA 2K6XA 3LTLA 4JWLA 4C0AA 1KU1A 2HSNA 4FHRB 4D7QA 4FQ0C 2R0DA 4D7RA 4KN7X 1XT0B 4KMUX 4JK1X 1XSZA 1RE0B 4OIYA 1S9DE 1R8QE 1Q8DA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4Z21 A;  4C7P A;  4A4P A;  4JXH A;  1R8M E;  1BC9 A;  2R09 A;  3L8N A;  4JMI A;  4JMO A;  1R8S E;  4L5M A;  1PBV A;  3LTL A;  4JWL A;  4C0A A;  1KU1 A;  4D7Q A;  2R0D A;  4D7R A;  1XT0 B;  1XSZ A;  1RE0 B;  4OIY A;  1S9D E;  1R8Q E;  3SWV A; 
#chains in the Genus database with same CATH topology
 2D0A A;  2NLV A;  1QN8 A;  1AIS A;  1N3C A;  1ALA A;  1P5D X;  2IV8 A;  3L8N A;  2Q4C A;  2NOE A;  5IYD P;  1BCZ A;  1KU1 A;  1VTO A;  1DM5 A;  2NOZ A;  1HAK A;  1TUO A;  1QN3 A;  1UL7 A;  1LKV X;  1YQM A;  4C7P A;  1EUV A;  2V9J A;  4Q11 A;  4WZS D;  1BCW A;  3BKQ X;  3HS8 A;  1BCY A;  2MZ8 A;  2YH5 A;  4EAL A;  2ZOC A;  4JK1 X;  1HM6 A;  1C9B B;  2HYW A;  2EHB D;  5JN5 A;  4B0A A;  2FUV A;  1HU0 A;  1BC1 A;  3OSM A;  1LWV A;  1PZD A;  3TE5 A;  3ENC A;  1VTL E;  1M5Q 1;  3N89 A;  2H4L X;  1N42 A;  1M3H A;  1PBV A;  1V5S A;  4KN7 X;  1R4X A;  3VN5 A;  2NOF A;  1TBA B;  2DKA A;  1MPG A;  1TBP A;  1QNC A;  1DK5 A;  1BC9 A;  4DUL A;  1FN7 A;  1M3Q A;  1BO9 A;  1HVD A;  1D3U A;  2XHI A;  2Z0F A;  4JWL A;  3OH9 A;  1LWY A;  3CWS A;  1E42 A;  5JMV D;  2R5X A;  4OIY A;  1J3M A;  2NOB A;  3EIK A;  1B9K A;  1N00 A;  1QN5 A;  4Z21 A;  5AN4 A;  2QEZ A;  4HRE A;  4ROC B;  4QG5 A;  1UT7 A;  1AII A;  1C1K A;  4JMI A;  1JDY A;  3NA5 A;  3CWA A;  2JHJ A;  3RSM A;  1JFI C;  3I0X A;  4FHR B;  1RM1 A;  3BRX A;  1QN7 A;  2NWV A;  2H0M A;  2IV9 A;  3ANY A;  2Y8Q A;  2QRD A;  1QNE A;  2JHN A;  1N39 A;  1R8S E;  3OH6 A;  4EAG A;  1WQA A;  4FQ0 C;  2R0D A;  3C04 A;  1VKL A;  4I8O A;  4BJU A;  4EAK A;  2NOL A;  1AEI A;  1MCX A;  2NVM A;  1YCN A;  2HL8 A;  3OLP A;  1NGM A;  3ASM A;  1YQR A;  1R4A E;  1QNB A;  2F7L A;  4WX8 A;  1YTB A;  4EVF A;  3OST A;  1T6A A;  1HVE A;  2QRC A;  4JMO A;  4L5M A;  1KO9 A;  4ROE B;  4Q2S A;  4EAJ A;  1VOK A;  1KY7 A;  1YJ0 A;  4KMU X;  1YQL A;  4HJH A;  3I0W A;  3PMG A;  2H0K A;  1KY6 A;  3DPT A;  1KYD A;  1EBM A;  1QTS A;  3ULX A;  2MJ7 A;  2PWW A;  3USY A;  2HKP A;  2JOI A;  1LWW A;  1R8M E;  2IE7 A;  3AJC A;  5F9C A;  1W80 A;  1K35 A;  2ZHI A;  1K2Y X;  5IYB P;  2DKD A;  2FKF A;  2H0L A;  4ROD B;  5HSH A;  2JPI A;  2YA3 A;  3CVT A;  2QRE A;  1R8Q E;  1PCM X;  1Q8D A;  2V8Q A;  2FGT A;  2FKM X;  3USW A;  1QTP A;  1SAV A;  2QLV A;  2OY9 A;  2H5A X;  1CDW A;  1A8A A;  2VJ0 A;  2LAE A;  3PDK A;  3RPJ A;  4C0A A;  3F10 A;  2HZS A;  2HSN A;  4D7Q A;  3IH7 A;  2Z8U A;  1AXN A;  2DKC A;  2IE6 A;  4X9P A;  1YQK A;  4JXH A;  4WXA A;  4MRQ A;  1W3W A;  2G30 A;  1QC7 A;  2D0B A;  3AO0 A;  1HVF A;  1WJW A;  5EPC A;  3ENO C;  1YII A;  1RE0 B;  1W7B A;  1AVH A;  2HYU A;  2O3O A;  3HS9 A;  2Y8L A;  3TW5 A;  3ABS A;  1A8B A;  2R09 A;  2IIC A;  1PCZ A;  2QR1 A;  1KYU A;  1KYF A;  1XJL A;  1AVR A;  4D7R A;  3DPU A;  1W45 A;  2D0C A;  2HYV A;  3EAY A;  3OCI A;  5BMN A;  3ABQ A;  3F0Z A;  1QN4 A;  4CFF A;  1UPT B;  3CWU A;  3H1Z A;  3OSE A;  1C4G A;  3ABR A;  1P5G X;  4EAI A;  1KFQ A;  3SOH B;  1M9I A;  3KTU A;  2K6X A;  5IYC P;  1XT0 B;  1ANW A;  3D7Q A;  4IL8 A;  1YGM A;  1NH2 A;  1BC3 A;  4EVH A;  1DIZ A;  1N44 A;  4KN4 X;  4TPS A;  1YTF A;  3UW2 A;  3I3W A;  2RAN A;  1VOL B;  3TDH A;  1KFI A;  4PY5 A;  1ANX A;  2ZFD B;  1S9D E;  1G5N A;  3CW7 A;  3CVS A;  2OOX A;  2HL9 A;  2HZM A;  1UT4 A;  1NVP A;  4EJZ A;  3T4N A;  1PCJ X;  3ABO A;  2OOY A;  5KL0 A;  1AVC A;  1I4A A;  1Q9U A;  1QN9 A;  5BMP A;  1PVS A;  3D4V A;  2ZHJ A;  4A4P A;  1C47 A;  1LXT A;  1QNA A;  1AOW A;  1ANN A;  2II2 A;  3LTL A;  1QN6 A;  2NOH A;  3OC3 C;  2XO2 A;  4EJY A;  1N41 A;  1BC0 A;  2NOI A;  2V92 A;  1N3A A;  2I5W A;  3SNS A;  3HJL A;  3KRM A;  1MP9 A;  2XO3 A;  3CWT A;  4MDU A;  1TGH A;  2VXG A;  1HVG A;  1XSZ A;  3OGD A;  4MDV A;  3SWV A; 
#chains in the Genus database with same CATH homology
 1LKV X;  4Z21 A;  3TW5 A;  4C7P A;  4A4P A;  3USY A;  4JXH A;  3USW A;  1R8M E;  1BC9 A;  2R09 A;  3HJL A;  3L8N A;  3AJC A;  4JMI A;  3SOH B;  4JMO A;  3SWV A;  1R8S E;  1QC7 A;  1PBV A;  4KN4 X;  4L5M A;  2K6X A;  3LTL A;  4JWL A;  4C0A A;  1KU1 A;  2HSN A;  4FHR B;  4D7Q A;  4FQ0 C;  2R0D A;  4D7R A;  4KN7 X;  1XT0 B;  4KMU X;  4JK1 X;  1XSZ A;  1RE0 B;  4OIY A;  1S9D E;  1R8Q E;  1Q8D A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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