1HVDA

Structural and electrophysiological analysis of annexin v mutants. mutagenesis of human annexin v, an in vitro voltage-gated calcium channel, provides information about the structural features of the ion pathway, the voltage sensor and the ion selectivity filter
Total Genus 131
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
131
sequence length
313
structure length
313
Chain Sequence
VLRGTVTDFPGFDGRADAETLRKAMKGLGTDEESILTLLTSRSNAQRQEISAAFKTLFGRDLLDDLKSELTGKFEKLIVALMKPSRLYDAYELKHALKGAGTNEKVLTEIIASRTPEELRAIKQVYEEEYGSSLEDDVVGDTSGYYQRMLVVLLQANRDPDAGIDEAQVEQDAQALFQAGELKWGTDEEKFITIFGTRSVSHLRKVFDKYMTISGFQIEETIDRETSGNLEQLLLAVVKSIRSIPAYLAETLYYAMKGAGTDDHTLIRVMVSRSEIDLFNIRKEFRKNFATSLYSMIKGDTSGDYKKALLLLC
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Calcium/phospholipid binding
molecule keywords ANNEXIN V
publication title Structural and electrophysiological analysis of annexin V mutants. Mutagenesis of human annexin V, an in vitro voltage-gated calcium channel, provides information about the structural features of the ion pathway, the voltage sensor and the ion selectivity filter
pubmed doi rcsb
source organism Homo sapiens
total genus 131
structure length 313
sequence length 313
ec nomenclature
pdb deposition date 1994-06-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00191 Annexin Annexin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.220.10 Mainly Alpha Orthogonal Bundle Annexin V; domain 1 Annexin 1hvdA02
1.10.220.10 Mainly Alpha Orthogonal Bundle Annexin V; domain 1 Annexin 1hvdA04
1.10.220.10 Mainly Alpha Orthogonal Bundle Annexin V; domain 1 Annexin 1hvdA01
1.10.220.10 Mainly Alpha Orthogonal Bundle Annexin V; domain 1 Annexin 1hvdA03
2HYWA 1AIIA 2ZHIA 1HVGA 2H0KA 1HVDA 4EVFA 1AEIA 1DK5A 1N44A 2HYVA 1AXNA 2II2A 1A8AA 4X9PA 1BO9A 4EVHA 2H0LA 1YJ0A 2XO2A 4MDUA 1XJLA 1ANNA 2Q4CA 1N41A 1YIIA 1AVCA 1A8BA 4HREA 2XO3A 2RANA 1ANWA 1I4AA 1W3WA 1HVEA 1N00A 2IE6A 1W7BA 3BRXA 2IE7A 1BCWA 1BCYA 2ZOCA 1BC0A 1BCZA 1YCNA 1G5NA 1HVFA 1ALAA 4MDVA 1BC3A 1N42A 1MCXA 1W45A 1SAVA 1AVRA 2HYUA 1BC1A 2ZHJA 1HM6A 2IICA 1AVHA 1AOWA 1M9IA 1ANXA 1DM5A 1HAKA 2H0MA
chains in the Genus database with same CATH superfamily
2HYWA 1AIIA 3ANYA 1AEIA 1AXNA 2II2A 1UPTB 4KMUX 1S9DE 4KN7X 4EVHA 1YJ0A 2XO2A 3AO0A 2XO3A 1YGMA 1RE0B 1W3WA 1I4AA 1HVEA 3BRXA 1XSZA 1BC0A 1BCZA 2VXGA 1ALAA 4MDVA 1AVRA 4Q2SA 2ZHJA 1HM6A 2IICA 1R8QE 1ANXA 3SOHB 2ZHIA 4C0AA 1HVGA 4KN4X 1BC9A 1N44A 4X9PA 1A8AA 1LKVX 1XT0B 2Q4CA 1N41A 1YIIA 1A8BA 2RANA 1N00A 2IE6A 4JMIA 4JMOA 1BCWA 1Q8DA 1YCNA 1BC3A 1N42A 1R8ME 2K6XA 1R4AE 4A4PA 1BC1A 1C1KA 4FHRB 3TW5A 4OIYA 3ABSA 1HVDA 4FQ0C 2HYVA 4JWLA 1PBVA 1XJLA 1ANNA 4C7PA 2R0DA 3SWVA 3USWA 4JK1X 1BCYA 2ZOCA 1G5NA 1HVFA 1W45A 1MCXA 3L8NA 1SAVA 1QC7A 3ABOA 3USYA 2HYUA 1DM5A 1HAKA 2H0MA 2H0KA 2R09A 3ABRA 4EVFA 1DK5A 4JXHA 1BO9A 2H0LA 4MDUA 1R8SE 3ABQA 1AVCA 3HJLA 2HSNA 4HREA 2QEZA 1ANWA 3AJCA 1W7BA 2IE7A 1KU1A 3LTLA 4D7QA 4Z21A 4L5MA 4D7RA 1AVHA 1AOWA 1M9IA 2OY9A
chains in the Genus database with same CATH topology
2HYWA 1AIIA 2ZHIA 1HVGA 2H0KA 1HVDA 4EVFA 1AEIA 1DK5A 1N44A 2HYVA 1AXNA 2II2A 1A8AA 4X9PA 1BO9A 4EVHA 2H0LA 1YJ0A 2XO2A 4MDUA 1XJLA 1ANNA 2Q4CA 1N41A 1YIIA 1AVCA 1A8BA 4HREA 2XO3A 2RANA 1ANWA 1I4AA 1W3WA 1HVEA 1N00A 2IE6A 1W7BA 3BRXA 2IE7A 1BCWA 1BCYA 2ZOCA 1BC0A 1BCZA 1YCNA 1G5NA 1HVFA 1ALAA 4MDVA 1BC3A 1N42A 1MCXA 1W45A 1SAVA 1AVRA 2HYUA 1BC1A 2ZHJA 1HM6A 2IICA 1AVHA 1AOWA 1M9IA 1ANXA 1DM5A 1HAKA 2H0MA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2HYW A;  1AII A;  2ZHI A;  1HVG A;  2H0K A;  1HVD A;  4EVF A;  1AEI A;  1DK5 A;  1N44 A;  2HYV A;  1AXN A;  2II2 A;  1A8A A;  4X9P A;  1BO9 A;  4EVH A;  2H0L A;  1YJ0 A;  2XO2 A;  4MDU A;  1XJL A;  1ANN A;  2Q4C A;  1N41 A;  1YII A;  1AVC A;  1A8B A;  4HRE A;  2XO3 A;  2RAN A;  1ANW A;  1I4A A;  1W3W A;  1HVE A;  1N00 A;  2IE6 A;  1W7B A;  3BRX A;  2IE7 A;  1BCW A;  1BCY A;  2ZOC A;  1BC0 A;  1BCZ A;  1YCN A;  1G5N A;  1HVF A;  1ALA A;  4MDV A;  1BC3 A;  1N42 A;  1MCX A;  1W45 A;  1SAV A;  1AVR A;  2HYU A;  1BC1 A;  2ZHJ A;  1HM6 A;  2IIC A;  1AVH A;  1AOW A;  1M9I A;  1ANX A;  1DM5 A;  1HAK A;  2H0M A; 
#chains in the Genus database with same CATH topology
 2HYW A;  1AII A;  3ANY A;  1AEI A;  1AXN A;  2II2 A;  1UPT B;  4KMU X;  1S9D E;  4KN7 X;  4EVH A;  1YJ0 A;  2XO2 A;  3AO0 A;  2XO3 A;  1YGM A;  1RE0 B;  1W3W A;  1I4A A;  1HVE A;  3BRX A;  1XSZ A;  1BC0 A;  1BCZ A;  2VXG A;  1ALA A;  4MDV A;  1AVR A;  4Q2S A;  2ZHJ A;  1HM6 A;  2IIC A;  1R8Q E;  1ANX A;  3SOH B;  2ZHI A;  4C0A A;  1HVG A;  4KN4 X;  1BC9 A;  1N44 A;  4X9P A;  1A8A A;  1LKV X;  1XT0 B;  2Q4C A;  1N41 A;  1YII A;  1A8B A;  2RAN A;  1N00 A;  2IE6 A;  4JMI A;  4JMO A;  1BCW A;  1Q8D A;  1YCN A;  1BC3 A;  1N42 A;  1R8M E;  2K6X A;  1R4A E;  4A4P A;  1BC1 A;  1C1K A;  4FHR B;  3TW5 A;  4OIY A;  3ABS A;  1HVD A;  4FQ0 C;  2HYV A;  4JWL A;  1PBV A;  1XJL A;  1ANN A;  4C7P A;  2R0D A;  3SWV A;  3USW A;  4JK1 X;  1BCY A;  2ZOC A;  1G5N A;  1HVF A;  1W45 A;  1MCX A;  3L8N A;  1SAV A;  1QC7 A;  3ABO A;  3USY A;  2HYU A;  1DM5 A;  1HAK A;  2H0M A;  2H0K A;  2R09 A;  3ABR A;  4EVF A;  1DK5 A;  4JXH A;  1BO9 A;  2H0L A;  4MDU A;  1R8S E;  3ABQ A;  1AVC A;  3HJL A;  2HSN A;  4HRE A;  2QEZ A;  1ANW A;  3AJC A;  1W7B A;  2IE7 A;  1KU1 A;  3LTL A;  4D7Q A;  4Z21 A;  4L5M A;  4D7R A;  1AVH A;  1AOW A;  1M9I A;  2OY9 A; 
#chains in the Genus database with same CATH homology
 2HYW A;  1AII A;  2ZHI A;  1HVG A;  2H0K A;  1HVD A;  4EVF A;  1AEI A;  1DK5 A;  1N44 A;  2HYV A;  1AXN A;  2II2 A;  1A8A A;  4X9P A;  1BO9 A;  4EVH A;  2H0L A;  1YJ0 A;  2XO2 A;  4MDU A;  1XJL A;  1ANN A;  2Q4C A;  1N41 A;  1YII A;  1AVC A;  1A8B A;  4HRE A;  2XO3 A;  2RAN A;  1ANW A;  1I4A A;  1W3W A;  1HVE A;  1N00 A;  2IE6 A;  1W7B A;  3BRX A;  2IE7 A;  1BCW A;  1BCY A;  2ZOC A;  1BC0 A;  1BCZ A;  1YCN A;  1G5N A;  1HVF A;  1ALA A;  4MDV A;  1BC3 A;  1N42 A;  1MCX A;  1W45 A;  1SAV A;  1AVR A;  2HYU A;  1BC1 A;  2ZHJ A;  1HM6 A;  2IIC A;  1AVH A;  1AOW A;  1M9I A;  1ANX A;  1DM5 A;  1HAK A;  2H0M A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...