4C7PA

Crystal structure of legionella pneumophila ralf f255k mutant
Total Genus 119
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
119
sequence length
347
structure length
347
Chain Sequence
SHPEIEKAQREIIEAFNAKPKNGINKIKEICEQYKISPNEEIAEFFHQQRKNLDLEAVGDYLSSPEAENQQVLKAFTSQMNFNGQSFVEGLRTFLKTFKLPGEAQKIDRLVQSFSGAYFQQNPDVVSNADAAYLLAFQTIMLNTDLHNPSIPEKNKMTVDGLKRNLRGGNNGGDFDAKFLEELYSEIKAKPFELNFVKTSPGYELTSTTLNKDSTFKKLDSFLHSTDVNINTVFPGIGDNVKTTVDQPKSWLSFKTGYKGTITLTDNKTSAQATIQVYTPNIFSKWLFGEQPRVIIQPGQTKESIDLAAKAAADFSSPVKNFKATYDYEVGDLIKAYDNQKKLITIE
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Signaling protein
source organism Legionella pneumophila
publication title A Novel Membrane Sensor Controls the Localization and Arfgef Activity of Bacterial Ralf.
pubmed doi rcsb
molecule keywords RALF
total genus 119
structure length 347
sequence length 347
ec nomenclature
pdb deposition date 2013-09-24

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01369 Sec7 Sec7 domain
A PF18248 RalF_SCD RalF C-terminal Sec-7 capping domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.220.20 Mainly Alpha Orthogonal Bundle Annexin V; domain 1 Annexin V; domain 1 4c7pA01
1.10.1000.11 Mainly Alpha Orthogonal Bundle Arf Nucleotide-binding Site Opener; domain 2 Arf Nucleotide-binding Site Opener,domain 2 4c7pA02
3.30.310.140 Alpha Beta 2-Layer Sandwich TATA-Binding Protein sec7 domains 4c7pA03
1BC9A 1S9DE 4A4PA 1XSZA 4C0AA 3SWVA 4JMIA 1RE0B 2R09A 1KU1A 4L5MA 4OIYA 1R8ME 3LTLA 4JMOA 4D7QA 1PBVA 4C7PA 3L8NA 4JWLA 4Z21A 1R8QE 1R8SE 4D7RA 2R0DA 1XT0B 4JXHA
chains in the Genus database with same CATH superfamily
1NH2A 1YQMA 4DULA 2QLVA 4KN7X 2HZMA 4ROEB 4EAJA 4OIYA 4Q2SA 1LKVX 2NOHA 1QNEA 4JWLA 2Z8UA 1AOWA 1YQKA 2R0DA 1PVSA 4JXHA 1PCJX 3OCIA 1W80A 3C04A 4JK1X 3KTUA 5AN4A 1VOLB 1YTFA 5IYCP 1HU0A 4EAGA 1B9KA 2D0BA 3EIKA 4FHRB 3H1ZA 1G5NA 5JN5A 1PBVA 4PY5A 3HS9A 2QRDA 1HVFA 1LWVA 1AXNA 1N3AA 3DPUA 2YH5A 4WX8A 1K2YX 3I3WA 3RSMA 3ABRA 2FUVA 1TUOA 1KYFA 4EAKA 2IE7A 2QRCA 1QNBA 2HSNA 2HZSA 1A8AA 1QC7A 1W45A 1N00A 2FGTA 3OLPA 4D7RA 1C1KA 2Z0FA 1TBPA 2D0CA 5BMPA 1YGMA 2NVMA 1QNAA 4QG5A 3PMGA 2JPIA 3DPTA 3RPJA 2F7LA 1AISA 1DK5A 2JOIA 1Q9UA 3TDHA 3ABQA 2NOLA 4HREA 4Q11A 1N42A 2JHNA 3USYA 3L8NA 2IV8A 1BC1A 2PWWA 1QTPA 4BJUA 1JFIC 1TGHA 2VXGA 1JDYA 1XSZA 4I8OA 1RE0B 1P5GX 5IYDP 5BMNA 4FQ0C 3I0WA 2O3OA 1YIIA 1M3HA 1KO9A 1YCNA 1XT0B 1QN8A 2ZFDB 1QN7A 1LWYA 1W3WA 2NOFA 2I5WA 1UT4A 1DIZA 1PCMX 3ENCA 1R4AE 2OY9A 3OH9A 3OSEA 1WQAA 2QEZA 3ASMA 1EBMA 4EVFA 5HSHA 3CWSA 5KL0A 3HS8A 1A8BA 1QTSA 2NWVA 1QN4A 1KU1A 1HVGA 4TPSA 3N89A 2V92A 3OSMA 1NGMA 1BCYA 4Z21A 3D7QA 3UW2A 2H0KA 2NOIA 2H0MA 2V9JA 3SNSA 3BRXA 4JMIA 3T4NA 2DKDA 3CWTA 5IYBP 1BCWA 3VN5A 1R8ME 3LTLA 2H0LA 2FKMX 4EALA 2HYWA 4JMOA 1LXTA 3SOHB 2DKCA 1KYDA 1ANWA 4EAIA 3OSTA 1K35A 1N41A 2G30A 3KRMA 3OC3C 3D4VA 5EPCA 4MDUA 1QNCA 4KMUX 1BC3A 1M3QA 1P5DX 2Y8LA 1PCZA 2HYVA 2VJ0A 1R4XA 4KN4X 1UL7A 1AVRA 4MDVA 2MJ7A 4A4PA 3BKQX 1KFIA 3I0XA 1VTOA 2DKAA 2V8QA 1BC0A 1VOKA 4B0AA 2IE6A 1Q8DA 2NOBA 3TE5A 3OH6A 1R8QE 1C47A 3F10A 1YJ0A 1KFQA 4ROCB 2R5XA 1UT7A 4IL8A 2XHIA 1HM6A 1S9DE 2NOZA 2RANA 3SWVA 2IICA 2QR1A 1VTLE 2IV9A 3ABOA 2JHJA 3CVSA 4D7QA 1M9IA 1YQLA 2YA3A 2Y8QA 3CW7A 1VKLA 2OOXA 3ULXA 2XO3A 1AVCA 2QREA 4HJHA 3CWUA 4C0AA 1HVEA 5JMVD 1QN3A 2OOYA 2K6XA 3ABSA 5F9CA 1NVPA 4EJYA 4WZSD 1ANNA 2H4LX 1E42A 1BCZA 4C7PA 1AIIA 2D0AA 3CVTA 1PZDA 1HVDA 1I4AA 1WJWA 2HL8A 1EUVA 2R09A 1YQRA 1MPGA 2ZOCA 2H5AX 4EJZA 1LWWA 1UPTB 3F0ZA 3ANYA 2FKFA 2HL9A 1QN6A 1MP9A 1W7BA 1DM5A 1R8SE 3OGDA 1N3CA 1D3UA 1XJLA 3PDKA 1SAVA 1AEIA 3IH7A 1BO9A 4CFFA 1AVHA 1QN9A 4WXAA 3USWA 1C9BB 1M5Q1 1N39A 1CDWA 4RODB 2II2A 1V5SA 2HYUA 1QN5A 1KYUA 2MZ8A 1KY7A 4L5MA 1C4GA 2NLVA 2HKPA 3NA5A 1ALAA 2LAEA 3TW5A 1J3MA 1TBAB 1BC9A 1YTBA 1N44A 1ANXA 3AJCA 4X9PA 2ZHJA 1KY6A 2ZHIA 1T6AA 1FN7A 3AO0A 2NOEA 3CWAA 3HJLA 1HAKA 2Q4CA 4MRQA 1MCXA 3ENOC 1RM1A 2EHBD 2XO2A 4EVHA 3EAYA
chains in the Genus database with same CATH topology
1BC9A 1S9DE 4A4PA 1XSZA 3AJCA 4JK1X 4C0AA 3SWVA 4JMIA 1RE0B 4KN7X 2R09A 1KU1A 2K6XA 4KMUX 4L5MA 4OIYA 1R8ME 3LTLA 1LKVX 1Q8DA 2HSNA 4JMOA 3USWA 4FHRB 4D7QA 1PBVA 4FQ0C 3SOHB 1QC7A 3HJLA 3USYA 4C7PA 3L8NA 4JWLA 4Z21A 1R8QE 1R8SE 4KN4X 4D7RA 2R0DA 1XT0B 3TW5A 4JXHA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1BC9 A;  1S9D E;  4A4P A;  1XSZ A;  4C0A A;  3SWV A;  4JMI A;  1RE0 B;  2R09 A;  1KU1 A;  4L5M A;  4OIY A;  1R8M E;  3LTL A;  4JMO A;  4D7Q A;  1PBV A;  4C7P A;  3L8N A;  4JWL A;  4Z21 A;  1R8Q E;  1R8S E;  4D7R A;  2R0D A;  1XT0 B;  4JXH A; 
#chains in the Genus database with same CATH topology
 1NH2 A;  1YQM A;  4DUL A;  2QLV A;  4KN7 X;  2HZM A;  4ROE B;  4EAJ A;  4OIY A;  4Q2S A;  1LKV X;  2NOH A;  1QNE A;  4JWL A;  2Z8U A;  1AOW A;  1YQK A;  2R0D A;  1PVS A;  4JXH A;  1PCJ X;  3OCI A;  1W80 A;  3C04 A;  4JK1 X;  3KTU A;  5AN4 A;  1VOL B;  1YTF A;  5IYC P;  1HU0 A;  4EAG A;  1B9K A;  2D0B A;  3EIK A;  4FHR B;  3H1Z A;  1G5N A;  5JN5 A;  1PBV A;  4PY5 A;  3HS9 A;  2QRD A;  1HVF A;  1LWV A;  1AXN A;  1N3A A;  3DPU A;  2YH5 A;  4WX8 A;  1K2Y X;  3I3W A;  3RSM A;  3ABR A;  2FUV A;  1TUO A;  1KYF A;  4EAK A;  2IE7 A;  2QRC A;  1QNB A;  2HSN A;  2HZS A;  1A8A A;  1QC7 A;  1W45 A;  1N00 A;  2FGT A;  3OLP A;  4D7R A;  1C1K A;  2Z0F A;  1TBP A;  2D0C A;  5BMP A;  1YGM A;  2NVM A;  1QNA A;  4QG5 A;  3PMG A;  2JPI A;  3DPT A;  3RPJ A;  2F7L A;  1AIS A;  1DK5 A;  2JOI A;  1Q9U A;  3TDH A;  3ABQ A;  2NOL A;  4HRE A;  4Q11 A;  1N42 A;  2JHN A;  3USY A;  3L8N A;  2IV8 A;  1BC1 A;  2PWW A;  1QTP A;  4BJU A;  1JFI C;  1TGH A;  2VXG A;  1JDY A;  1XSZ A;  4I8O A;  1RE0 B;  1P5G X;  5IYD P;  5BMN A;  4FQ0 C;  3I0W A;  2O3O A;  1YII A;  1M3H A;  1KO9 A;  1YCN A;  1XT0 B;  1QN8 A;  2ZFD B;  1QN7 A;  1LWY A;  1W3W A;  2NOF A;  2I5W A;  1UT4 A;  1DIZ A;  1PCM X;  3ENC A;  1R4A E;  2OY9 A;  3OH9 A;  3OSE A;  1WQA A;  2QEZ A;  3ASM A;  1EBM A;  4EVF A;  5HSH A;  3CWS A;  5KL0 A;  3HS8 A;  1A8B A;  1QTS A;  2NWV A;  1QN4 A;  1KU1 A;  1HVG A;  4TPS A;  3N89 A;  2V92 A;  3OSM A;  1NGM A;  1BCY A;  4Z21 A;  3D7Q A;  3UW2 A;  2H0K A;  2NOI A;  2H0M A;  2V9J A;  3SNS A;  3BRX A;  4JMI A;  3T4N A;  2DKD A;  3CWT A;  5IYB P;  1BCW A;  3VN5 A;  1R8M E;  3LTL A;  2H0L A;  2FKM X;  4EAL A;  2HYW A;  4JMO A;  1LXT A;  3SOH B;  2DKC A;  1KYD A;  1ANW A;  4EAI A;  3OST A;  1K35 A;  1N41 A;  2G30 A;  3KRM A;  3OC3 C;  3D4V A;  5EPC A;  4MDU A;  1QNC A;  4KMU X;  1BC3 A;  1M3Q A;  1P5D X;  2Y8L A;  1PCZ A;  2HYV A;  2VJ0 A;  1R4X A;  4KN4 X;  1UL7 A;  1AVR A;  4MDV A;  2MJ7 A;  4A4P A;  3BKQ X;  1KFI A;  3I0X A;  1VTO A;  2DKA A;  2V8Q A;  1BC0 A;  1VOK A;  4B0A A;  2IE6 A;  1Q8D A;  2NOB A;  3TE5 A;  3OH6 A;  1R8Q E;  1C47 A;  3F10 A;  1YJ0 A;  1KFQ A;  4ROC B;  2R5X A;  1UT7 A;  4IL8 A;  2XHI A;  1HM6 A;  1S9D E;  2NOZ A;  2RAN A;  3SWV A;  2IIC A;  2QR1 A;  1VTL E;  2IV9 A;  3ABO A;  2JHJ A;  3CVS A;  4D7Q A;  1M9I A;  1YQL A;  2YA3 A;  2Y8Q A;  3CW7 A;  1VKL A;  2OOX A;  3ULX A;  2XO3 A;  1AVC A;  2QRE A;  4HJH A;  3CWU A;  4C0A A;  1HVE A;  5JMV D;  1QN3 A;  2OOY A;  2K6X A;  3ABS A;  5F9C A;  1NVP A;  4EJY A;  4WZS D;  1ANN A;  2H4L X;  1E42 A;  1BCZ A;  4C7P A;  1AII A;  2D0A A;  3CVT A;  1PZD A;  1HVD A;  1I4A A;  1WJW A;  2HL8 A;  1EUV A;  2R09 A;  1YQR A;  1MPG A;  2ZOC A;  2H5A X;  4EJZ A;  1LWW A;  1UPT B;  3F0Z A;  3ANY A;  2FKF A;  2HL9 A;  1QN6 A;  1MP9 A;  1W7B A;  1DM5 A;  1R8S E;  3OGD A;  1N3C A;  1D3U A;  1XJL A;  3PDK A;  1SAV A;  1AEI A;  3IH7 A;  1BO9 A;  4CFF A;  1AVH A;  1QN9 A;  4WXA A;  3USW A;  1C9B B;  1M5Q 1;  1N39 A;  1CDW A;  4ROD B;  2II2 A;  1V5S A;  2HYU A;  1QN5 A;  1KYU A;  2MZ8 A;  1KY7 A;  4L5M A;  1C4G A;  2NLV A;  2HKP A;  3NA5 A;  1ALA A;  2LAE A;  3TW5 A;  1J3M A;  1TBA B;  1BC9 A;  1YTB A;  1N44 A;  1ANX A;  3AJC A;  4X9P A;  2ZHJ A;  1KY6 A;  2ZHI A;  1T6A A;  1FN7 A;  3AO0 A;  2NOE A;  3CWA A;  3HJL A;  1HAK A;  2Q4C A;  4MRQ A;  1MCX A;  3ENO C;  1RM1 A;  2EHB D;  2XO2 A;  4EVH A;  3EAY A; 
#chains in the Genus database with same CATH homology
 1BC9 A;  1S9D E;  4A4P A;  1XSZ A;  3AJC A;  4JK1 X;  4C0A A;  3SWV A;  4JMI A;  1RE0 B;  4KN7 X;  2R09 A;  1KU1 A;  2K6X A;  4KMU X;  4L5M A;  4OIY A;  1R8M E;  3LTL A;  1LKV X;  1Q8D A;  2HSN A;  4JMO A;  3USW A;  4FHR B;  4D7Q A;  1PBV A;  4FQ0 C;  3SOH B;  1QC7 A;  3HJL A;  3USY A;  4C7P A;  3L8N A;  4JWL A;  4Z21 A;  1R8Q E;  1R8S E;  4KN4 X;  4D7R A;  2R0D A;  1XT0 B;  3TW5 A;  4JXH A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...