4C7PA

Crystal structure of legionella pneumophila ralf f255k mutant
Total Genus 119
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
119
sequence length
347
structure length
347
Chain Sequence
b'SHPEIEKAQREIIEAFNAKPKNGINKIKEICEQYKISPNEEIAEFFHQQRKNLDLEAVGDYLSSPEAENQQVLKAFTSQMNFNGQSFVEGLRTFLKTFKLPGEAQKIDRLVQSFSGAYFQQNPDVVSNADAAYLLAFQTIMLNTDLHNPSIPEKNKMTVDGLKRNLRGGNNGGDFDAKFLEELYSEIKAKPFELNFVKTSPGYELTSTTLNKDSTFKKLDSFLHSTDVNINTVFPGIGDNVKTTVDQPKSWLSFKTGYKGTITLTDNKTSAQATIQVYTPNIFSKWLFGEQPRVIIQPGQTKESIDLAAKAAADFSSPVKNFKATYDYEVGDLIKAYDNQKKLITIE'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title A Novel Membrane Sensor Controls the Localization and Arfgef Activity of Bacterial Ralf.
pubmed doi rcsb
molecule keywords RALF
source organism Legionella pneumophila
molecule tags Signaling protein
total genus 119
structure length 347
sequence length 347
ec nomenclature
pdb deposition date 2013-09-24

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01369 Sec7 Sec7 domain
A PF18248 RalF_SCD RalF C-terminal Sec-7 capping domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.220.20 Mainly Alpha Orthogonal Bundle Annexin V; domain 1 Annexin V; domain 1 4c7pA01
1.10.1000.11 Mainly Alpha Orthogonal Bundle Arf Nucleotide-binding Site Opener; domain 2 Arf Nucleotide-binding Site Opener,domain 2 4c7pA02
3.30.310.140 Alpha Beta 2-Layer Sandwich TATA-Binding Protein sec7 domains 4c7pA03
2R09A 4D7QA 4OIYA 1PBVA 4D7RA 1RE0B 4C0AA 4A4PA 1XSZA 4JMIA 3L8NA 1S9DE 4JXHA 2R0DA 1R8ME 3SWVA 3LTLA 4L5MA 1BC9A 1XT0B 1R8SE 1R8QE 4C7PA 4Z21A 4JMOA 4JWLA 1KU1A
chains in the Genus database with same CATH superfamily
1BC1A 3I0XA 3HJLA 1KY6A 1QNCA 4JXHA 2JHJA 3USYA 1HVDA 1V5SA 1ANXA 2HZSA 3CWAA 2ZHJA 1N39A 3TDHA 3AO0A 2NVMA 2DKDA 4ROCB 2Z0FA 3OLPA 3OC3C 2NOIA 2Y8LA 3OSEA 3TE5A 2O3OA 1K2YX 1QN5A 2H4LX 2IV9A 1M3HA 3SWVA 1W7BA 1QN3A 4EAGA 1W80A 1C9BB 1A8BA 2HYUA 2JHNA 1SAVA 4PY5A 4C0AA 2NOEA 1QNBA 1EUVA 1YJ0A 2QRDA 1YTFA 2Q4CA 1R4XA 1ANWA 4I8OA 3UW2A 2QLVA 3DPTA 2NOHA 3HS9A 3TW5A 1B9KA 1PCMX 1XT0B 4KN4X 4C7PA 4Z21A 2H5AX 3OSTA 1KU1A 1VOKA 3USWA 4JK1X 2HKPA 1K35A 1R8ME 3I3WA 4EALA 3OGDA 2DKAA 4QG5A 1MP9A 3CWTA 1P5GX 3PDKA 3SNSA 1BC9A 2H0LA 3KTUA 5F9CA 4MDVA 1YCNA 3KRMA 1KO9A 5BMPA 4D7RA 2R5XA 4TPSA 3CWSA 1KY7A 4ROEB 1LWVA 2FKMX 2G30A 1HU0A 1YQMA 3D4VA 1YIIA 5JMVD 1BO9A 2ZHIA 2QR1A 4EAJA 4WZSD 2IE6A 1EBMA 2OY9A 1BCWA 2R09A 2YA3A 1DIZA 1ALAA 3ABQA 1AISA 3RPJA 1XSZA 1BC0A 2F7LA 1W45A 2Z8UA 3PMGA 3SOHB 1QTPA 2NWVA 2HYWA 1LWYA 2JOIA 2I5WA 1RE0B 2VXGA 2MZ8A 1N3CA 3ABRA 3OCIA 1N41A 2NOFA 1PVSA 4B0AA 3L8NA 1YQKA 1TGHA 1HM6A 1Q8DA 2NLVA 3T4NA 3ANYA 4IL8A 1AEIA 1R8SE 1WQAA 2LAEA 5AN4A 3ABSA 2QRCA 4D7QA 1A8AA 4HREA 4EVFA 1C47A 2IV8A 4RODB 3F0ZA 1AVHA 1N00A 4CFFA 1HVFA 2PWWA 2ZOCA 1TUOA 4EJZA 2OOXA 4HJHA 1G5NA 3D7QA 1PZDA 1UT7A 1YQLA 1HVEA 1KFQA 1S9DE 2NOLA 1CDWA 2Y8QA 1QN4A 1T6AA 5HSHA 3CVTA 2NOZA 3OH9A 1VTOA 1ANNA 2D0AA 4BJUA 4L5MA 2IICA 3I0WA 1M5Q1 1WJWA 3IH7A 1BC3A 1XJLA 1BCYA 3ASMA 2NOBA 1DK5A 2QREA 1YGMA 1W3WA 2V8QA 5KL0A 4DULA 1JDYA 4FHRB 1R4AE 2EHBD 3DPUA 2IE7A 1AVRA 3ABOA 4Q11A 1NH2A 1QTSA 5EPCA 4EVHA 4A4PA 1HVGA 4EJYA 2DKCA 1N3AA 2FKFA 4EAKA 3ENOC 1QN8A 3ENCA 1M3QA 1VTLE 3OH6A 1N44A 4JWLA 1YTBA 1DM5A 2D0BA 1C4GA 1KYFA 1MPGA 2K6XA 3F10A 3LTLA 4EAIA 3CVSA 1AIIA 1NVPA 1E42A 1KYDA 1NGMA 1PCZA 4JMOA 1JFIC 2HL9A 2ZFDB 1AVCA 1FN7A 4JMIA 1TBPA 2XO2A 2V9JA 1PCJX 1N42A 2XO3A 4MRQA 1RM1A 1J3MA 1M9IA 1QNAA 1Q9UA 2VJ0A 4WXAA 3EAYA 1KYUA 1HAKA 2HL8A 2OOYA 1D3UA 1VOLB 4Q2SA 2D0CA 2FUVA 1QN9A 2H0MA 1VKLA 4KN7X 2JPIA 4MDUA 2II2A 2R0DA 2RANA 1MCXA 5IYBP 1KFIA 2HZMA 4WX8A 2H0KA 3H1ZA 3N89A 3RSMA 3AJCA 1LXTA 3NA5A 1UT4A 1YQRA 1BCZA 4OIYA 1PBVA 3OSMA 2MJ7A 1QC7A 1LKVX 1TBAB 5BMNA 5IYCP 5JN5A 1AXNA 1QN6A 3EIKA 1LWWA 1R8QE 3HS8A 5IYDP 4KMUX 1QNEA 4X9PA 3BRXA 3CWUA 3BKQX 2HYVA 2YH5A 1QN7A 2FGTA 1UL7A 3C04A 2HSNA 3VN5A 1C1KA 1P5DX 2QEZA 1I4AA 2V92A 1AOWA 3CW7A 3ULXA 2XHIA 1UPTB 4FQ0C
chains in the Genus database with same CATH topology
2R09A 4D7QA 4OIYA 1PBVA 4D7RA 1RE0B 3HJLA 4C0AA 4A4PA 1XSZA 4KN7X 4FQ0C 3USWA 1QC7A 4JMIA 4JK1X 3L8NA 1LKVX 1S9DE 4JXHA 2R0DA 2HSNA 1R8ME 3SWVA 2K6XA 3SOHB 3LTLA 1Q8DA 4FHRB 3USYA 4L5MA 1BC9A 3TW5A 1XT0B 1R8SE 4KN4X 3AJCA 1R8QE 4C7PA 4Z21A 4JMOA 4JWLA 1KU1A 4KMUX
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2R09 A;  4D7Q A;  4OIY A;  1PBV A;  4D7R A;  1RE0 B;  4C0A A;  4A4P A;  1XSZ A;  4JMI A;  3L8N A;  1S9D E;  4JXH A;  2R0D A;  1R8M E;  3SWV A;  3LTL A;  4L5M A;  1BC9 A;  1XT0 B;  1R8S E;  1R8Q E;  4C7P A;  4Z21 A;  4JMO A;  4JWL A;  1KU1 A; 
#chains in the Genus database with same CATH topology
 1BC1 A;  3I0X A;  3HJL A;  1KY6 A;  1QNC A;  4JXH A;  2JHJ A;  3USY A;  1HVD A;  1V5S A;  1ANX A;  2HZS A;  3CWA A;  2ZHJ A;  1N39 A;  3TDH A;  3AO0 A;  2NVM A;  2DKD A;  4ROC B;  2Z0F A;  3OLP A;  3OC3 C;  2NOI A;  2Y8L A;  3OSE A;  3TE5 A;  2O3O A;  1K2Y X;  1QN5 A;  2H4L X;  2IV9 A;  1M3H A;  3SWV A;  1W7B A;  1QN3 A;  4EAG A;  1W80 A;  1C9B B;  1A8B A;  2HYU A;  2JHN A;  1SAV A;  4PY5 A;  4C0A A;  2NOE A;  1QNB A;  1EUV A;  1YJ0 A;  2QRD A;  1YTF A;  2Q4C A;  1R4X A;  1ANW A;  4I8O A;  3UW2 A;  2QLV A;  3DPT A;  2NOH A;  3HS9 A;  3TW5 A;  1B9K A;  1PCM X;  1XT0 B;  4KN4 X;  4C7P A;  4Z21 A;  2H5A X;  3OST A;  1KU1 A;  1VOK A;  3USW A;  4JK1 X;  2HKP A;  1K35 A;  1R8M E;  3I3W A;  4EAL A;  3OGD A;  2DKA A;  4QG5 A;  1MP9 A;  3CWT A;  1P5G X;  3PDK A;  3SNS A;  1BC9 A;  2H0L A;  3KTU A;  5F9C A;  4MDV A;  1YCN A;  3KRM A;  1KO9 A;  5BMP A;  4D7R A;  2R5X A;  4TPS A;  3CWS A;  1KY7 A;  4ROE B;  1LWV A;  2FKM X;  2G30 A;  1HU0 A;  1YQM A;  3D4V A;  1YII A;  5JMV D;  1BO9 A;  2ZHI A;  2QR1 A;  4EAJ A;  4WZS D;  2IE6 A;  1EBM A;  2OY9 A;  1BCW A;  2R09 A;  2YA3 A;  1DIZ A;  1ALA A;  3ABQ A;  1AIS A;  3RPJ A;  1XSZ A;  1BC0 A;  2F7L A;  1W45 A;  2Z8U A;  3PMG A;  3SOH B;  1QTP A;  2NWV A;  2HYW A;  1LWY A;  2JOI A;  2I5W A;  1RE0 B;  2VXG A;  2MZ8 A;  1N3C A;  3ABR A;  3OCI A;  1N41 A;  2NOF A;  1PVS A;  4B0A A;  3L8N A;  1YQK A;  1TGH A;  1HM6 A;  1Q8D A;  2NLV A;  3T4N A;  3ANY A;  4IL8 A;  1AEI A;  1R8S E;  1WQA A;  2LAE A;  5AN4 A;  3ABS A;  2QRC A;  4D7Q A;  1A8A A;  4HRE A;  4EVF A;  1C47 A;  2IV8 A;  4ROD B;  3F0Z A;  1AVH A;  1N00 A;  4CFF A;  1HVF A;  2PWW A;  2ZOC A;  1TUO A;  4EJZ A;  2OOX A;  4HJH A;  1G5N A;  3D7Q A;  1PZD A;  1UT7 A;  1YQL A;  1HVE A;  1KFQ A;  1S9D E;  2NOL A;  1CDW A;  2Y8Q A;  1QN4 A;  1T6A A;  5HSH A;  3CVT A;  2NOZ A;  3OH9 A;  1VTO A;  1ANN A;  2D0A A;  4BJU A;  4L5M A;  2IIC A;  3I0W A;  1M5Q 1;  1WJW A;  3IH7 A;  1BC3 A;  1XJL A;  1BCY A;  3ASM A;  2NOB A;  1DK5 A;  2QRE A;  1YGM A;  1W3W A;  2V8Q A;  5KL0 A;  4DUL A;  1JDY A;  4FHR B;  1R4A E;  2EHB D;  3DPU A;  2IE7 A;  1AVR A;  3ABO A;  4Q11 A;  1NH2 A;  1QTS A;  5EPC A;  4EVH A;  4A4P A;  1HVG A;  4EJY A;  2DKC A;  1N3A A;  2FKF A;  4EAK A;  3ENO C;  1QN8 A;  3ENC A;  1M3Q A;  1VTL E;  3OH6 A;  1N44 A;  4JWL A;  1YTB A;  1DM5 A;  2D0B A;  1C4G A;  1KYF A;  1MPG A;  2K6X A;  3F10 A;  3LTL A;  4EAI A;  3CVS A;  1AII A;  1NVP A;  1E42 A;  1KYD A;  1NGM A;  1PCZ A;  4JMO A;  1JFI C;  2HL9 A;  2ZFD B;  1AVC A;  1FN7 A;  4JMI A;  1TBP A;  2XO2 A;  2V9J A;  1PCJ X;  1N42 A;  2XO3 A;  4MRQ A;  1RM1 A;  1J3M A;  1M9I A;  1QNA A;  1Q9U A;  2VJ0 A;  4WXA A;  3EAY A;  1KYU A;  1HAK A;  2HL8 A;  2OOY A;  1D3U A;  1VOL B;  4Q2S A;  2D0C A;  2FUV A;  1QN9 A;  2H0M A;  1VKL A;  4KN7 X;  2JPI A;  4MDU A;  2II2 A;  2R0D A;  2RAN A;  1MCX A;  5IYB P;  1KFI A;  2HZM A;  4WX8 A;  2H0K A;  3H1Z A;  3N89 A;  3RSM A;  3AJC A;  1LXT A;  3NA5 A;  1UT4 A;  1YQR A;  1BCZ A;  4OIY A;  1PBV A;  3OSM A;  2MJ7 A;  1QC7 A;  1LKV X;  1TBA B;  5BMN A;  5IYC P;  5JN5 A;  1AXN A;  1QN6 A;  3EIK A;  1LWW A;  1R8Q E;  3HS8 A;  5IYD P;  4KMU X;  1QNE A;  4X9P A;  3BRX A;  3CWU A;  3BKQ X;  2HYV A;  2YH5 A;  1QN7 A;  2FGT A;  1UL7 A;  3C04 A;  2HSN A;  3VN5 A;  1C1K A;  1P5D X;  2QEZ A;  1I4A A;  2V92 A;  1AOW A;  3CW7 A;  3ULX A;  2XHI A;  1UPT B;  4FQ0 C; 
#chains in the Genus database with same CATH homology
 2R09 A;  4D7Q A;  4OIY A;  1PBV A;  4D7R A;  1RE0 B;  3HJL A;  4C0A A;  4A4P A;  1XSZ A;  4KN7 X;  4FQ0 C;  3USW A;  1QC7 A;  4JMI A;  4JK1 X;  3L8N A;  1LKV X;  1S9D E;  4JXH A;  2R0D A;  2HSN A;  1R8M E;  3SWV A;  2K6X A;  3SOH B;  3LTL A;  1Q8D A;  4FHR B;  3USY A;  4L5M A;  1BC9 A;  3TW5 A;  1XT0 B;  1R8S E;  4KN4 X;  3AJC A;  1R8Q E;  4C7P A;  4Z21 A;  4JMO A;  4JWL A;  1KU1 A;  4KMU X; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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