4D7RA

Crystal structure of a chimeric protein with the sec7 domain of rickettsia prowazekii ralf and the capping domain of legionella pneumophila ralf
Total Genus 132
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
132
sequence length
355
structure length
355
Chain Sequence
YFQGDSLLKNEVIKLFNDKPKSGIARIKKWCTDNNQDFIAETAKIFYEEKSNLNLEFVGDYLGTDGVDNQKVLESFTKQFDFKEKDYLESLRRFLQSFKLPGEAQKIDRLVESFGTHYYEQNLNIDINSKDAAYILAYQTIMLNTDLHNPSIAKSKKMTFEQLKNNLKGTNESKNFNDNFLKKIYDEIEAKPFKLNFVKTSPGYELTSTTLNKDSTFKKLDSFLHSTDVNINTVFPGIGDNVKTTVDQPKSWLSFFTGYKGTITLTDNKTSAQATIQVYTPNIFSKWLFGEQPRVIIQPGQTKESIDLAAKAAADFSSPVKNFKATYDYEVGDLIKAYDNQKKLITIERNLALKE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Signaling protein
molecule keywords PROLINE/BETAINE TRANSPORTER, RALF
publication title On the Use of Legionella/Rickettsia Chimeras to Investigate the Structure and Regulation of Rickettsia Effector Ralf.
pubmed doi rcsb
source organism Rickettsia prowazekii str. madrid e
total genus 132
structure length 355
sequence length 355
ec nomenclature
pdb deposition date 2014-11-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01369 Sec7 Sec7 domain
A PF01369 Sec7 Sec7 domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.220.20 Mainly Alpha Orthogonal Bundle Annexin V; domain 1 Annexin V; domain 1 4d7rA01
1.10.1000.11 Mainly Alpha Orthogonal Bundle Arf Nucleotide-binding Site Opener; domain 2 Arf Nucleotide-binding Site Opener,domain 2 4d7rA02
3.30.310.140 Alpha Beta 2-Layer Sandwich TATA-Binding Protein sec7 domains 4d7rA03
4OIYA 1R8ME 4Z21A 1KU1A 1R8QE 4A4PA 3L8NA 1R8SE 2R0DA 4JMIA 4JMOA 4C0AA 3LTLA 2R09A 4L5MA 4C7PA 1RE0B 4JWLA 1XT0B 1XSZA 4D7RA 4D7QA 4JXHA 1BC9A 1S9DE 3SWVA 1PBVA
chains in the Genus database with same CATH superfamily
4OIYA 2NOEA 5EPCA 2NWVA 1DIZA 1QNBA 2JHNA 5KL0A 1K35A 1BO9A 1PVSA 3TE5A 1NVPA 4IL8A 4EAJA 3F10A 3H1ZA 2OOXA 3OH6A 1KYFA 3AJCA 1BC1A 1QN7A 3ABOA 1S9DE 1HVDA 4JK1X 1N00A 1QC7A 2Q4CA 1AISA 5HSHA 2IE6A 4EAKA 3D7QA 3ABSA 2LAEA 1QN6A 2R0DA 1K2YX 1LKVX 2XO2A 2NOFA 4Q11A 1VTLE 2V9JA 4HJHA 4I8OA 1W7BA 2QREA 2FUVA 1QTSA 3CWUA 3TDHA 1W45A 1N44A 2DKAA 4MRQA 4WZSD 2NOHA 3C04A 2JPIA 3I3WA 3RPJA 1M5Q1 1M3HA 1AVRA 3DPTA 1KY6A 4C0AA 1A8BA 2QRDA 2HSNA 3N89A 3KRMA 1N41A 1W3WA 2NOZA 2QLVA 4BJUA 3OSEA 3CVSA 1KFIA 2V92A 3OSTA 2EHBD 3LTLA 1C9BB 1AVHA 3USWA 1RE0B 2MZ8A 1TGHA 3IH7A 1YQLA 1ANWA 5JN5A 5AN4A 1YJ0A 1YGMA 1R4AE 3EIKA 1ALAA 1R8SE 3BKQX 3SOHB 1ANXA 1PZDA 2JOIA 4EALA 3OSMA 1T6AA 1UT7A 2D0BA 1LWYA 1NH2A 1PCZA 3HS9A 3D4VA 2K6XA 3OCIA 3RSMA 2H5AX 2Z8UA 4ROEB 3PDKA 2Z0FA 2I5WA 1N3AA 1AXNA 1LWWA 1R4XA 4D7RA 1N42A 1HM6A 3HS8A 1PBVA 2PWWA 2HYVA 3EAYA 1J3MA 2MJ7A 1VOKA 3UW2A 3VN5A 3ANYA 1D3UA 1YTFA 4TPSA 1KY7A 2H0MA 1V5SA 2FGTA 4X9PA 4L5MA 4CFFA 2DKCA 3NA5A 3KTUA 4WXAA 3CWTA 4FHRB 1N3CA 4EJYA 1QN3A 1B9KA 4MDUA 1QN5A 3BRXA 1Q9UA 1AVCA 2NOLA 1QN9A 4Z21A 3ENOC 1BC3A 3CWSA 1BC0A 1HVGA 1FN7A 2ZOCA 1XJLA 2ZFDB 1E42A 2ZHIA 4KMUX 1WQAA 1LWVA 1W80A 1WJWA 3USYA 5IYCP 2IV9A 1QNCA 1C4GA 5F9CA 5IYDP 4PY5A 1MCXA 1BCZA 2IV8A 2H4LX 1MP9A 5BMNA 1YTBA 2HYUA 1XSZA 3I0XA 1VOLB 4JXHA 2QR1A 4HREA 1SAVA 1QTPA 2YH5A 1YQRA 3CVTA 1TUOA 1KO9A 4JMIA 1TBPA 3ABQA 4JWLA 1LXTA 1I4AA 1DM5A 1QNAA 1UPTB 1DK5A 1G5NA 2QEZA 2HL8A 1QNEA 1QN4A 1EBMA 2OY9A 3L8NA 1PCMX 3TW5A 1N39A 1M3QA 1ANNA 2H0LA 2G30A 2HZSA 1BCYA 1TBAB 1RM1A 1PCJX 2ZHJA 4WX8A 3AO0A 1KU1A 2NOBA 1NGMA 4JMOA 1P5GX 1AOWA 3CWAA 2R5XA 2HKPA 2II2A 2IICA 2NVMA 2HYWA 3DPUA 1UL7A 2FKFA 3OLPA 2XO3A 1MPGA 2HZMA 3OGDA 2D0AA 2OOYA 1R8QE 2D0CA 1HU0A 1C1KA 1KYDA 2VJ0A 1CDWA 3CW7A 2R09A 2HL9A 3ASMA 1EUVA 4C7PA 3ABRA 1M9IA 4FQ0C 4EJZA 5IYBP 1BC9A 3T4NA 3SWVA 1HVFA 3SNSA 4RODB 4DULA 4B0AA 2O3OA 4KN7X 2QRCA 1UT4A 4MDVA 2VXGA 1JDYA 2XHIA 4Q2SA 2JHJA 2F7LA 4EAIA 4EVFA 1AEIA 1BCWA 2FKMX 1Q8DA 3PMGA 3ENCA 2NLVA 4EVHA 1HVEA 1YQKA 4EAGA 2Y8QA 4ROCB 1C47A 4D7QA 3F0ZA 2IE7A 3I0WA 1QN8A 1P5DX 3HJLA 1VKLA 1R8ME 1KYUA 1YQMA 1YCNA 5JMVD 1KFQA 2V8QA 5BMPA 4A4PA 3OC3C 4QG5A 2DKDA 1VTOA 1YIIA 2Y8LA 2YA3A 2NOIA 1AIIA 3OH9A 1XT0B 1JFIC 1A8AA 2H0KA 3ULXA 2RANA 1HAKA 4KN4X
chains in the Genus database with same CATH topology
4OIYA 4JK1X 3HJLA 1R8ME 2K6XA 1QC7A 4Z21A 1KU1A 1R8QE 4A4PA 4KN7X 1PBVA 1R8SE 3L8NA 2R0DA 4JMIA 4JMOA 3SOHB 3TW5A 1LKVX 4C0AA 3LTLA 2R09A 4L5MA 2HSNA 4C7PA 4KMUX 3USWA 1RE0B 4JWLA 3AJCA 1XT0B 1XSZA 4D7RA 4FQ0C 4D7QA 4FHRB 1BC9A 4JXHA 1S9DE 3USYA 3SWVA 1Q8DA 4KN4X
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4OIY A;  1R8M E;  4Z21 A;  1KU1 A;  1R8Q E;  4A4P A;  3L8N A;  1R8S E;  2R0D A;  4JMI A;  4JMO A;  4C0A A;  3LTL A;  2R09 A;  4L5M A;  4C7P A;  1RE0 B;  4JWL A;  1XT0 B;  1XSZ A;  4D7R A;  4D7Q A;  4JXH A;  1BC9 A;  1S9D E;  3SWV A;  1PBV A; 
#chains in the Genus database with same CATH topology
 4OIY A;  2NOE A;  5EPC A;  2NWV A;  1DIZ A;  1QNB A;  2JHN A;  5KL0 A;  1K35 A;  1BO9 A;  1PVS A;  3TE5 A;  1NVP A;  4IL8 A;  4EAJ A;  3F10 A;  3H1Z A;  2OOX A;  3OH6 A;  1KYF A;  3AJC A;  1BC1 A;  1QN7 A;  3ABO A;  1S9D E;  1HVD A;  4JK1 X;  1N00 A;  1QC7 A;  2Q4C A;  1AIS A;  5HSH A;  2IE6 A;  4EAK A;  3D7Q A;  3ABS A;  2LAE A;  1QN6 A;  2R0D A;  1K2Y X;  1LKV X;  2XO2 A;  2NOF A;  4Q11 A;  1VTL E;  2V9J A;  4HJH A;  4I8O A;  1W7B A;  2QRE A;  2FUV A;  1QTS A;  3CWU A;  3TDH A;  1W45 A;  1N44 A;  2DKA A;  4MRQ A;  4WZS D;  2NOH A;  3C04 A;  2JPI A;  3I3W A;  3RPJ A;  1M5Q 1;  1M3H A;  1AVR A;  3DPT A;  1KY6 A;  4C0A A;  1A8B A;  2QRD A;  2HSN A;  3N89 A;  3KRM A;  1N41 A;  1W3W A;  2NOZ A;  2QLV A;  4BJU A;  3OSE A;  3CVS A;  1KFI A;  2V92 A;  3OST A;  2EHB D;  3LTL A;  1C9B B;  1AVH A;  3USW A;  1RE0 B;  2MZ8 A;  1TGH A;  3IH7 A;  1YQL A;  1ANW A;  5JN5 A;  5AN4 A;  1YJ0 A;  1YGM A;  1R4A E;  3EIK A;  1ALA A;  1R8S E;  3BKQ X;  3SOH B;  1ANX A;  1PZD A;  2JOI A;  4EAL A;  3OSM A;  1T6A A;  1UT7 A;  2D0B A;  1LWY A;  1NH2 A;  1PCZ A;  3HS9 A;  3D4V A;  2K6X A;  3OCI A;  3RSM A;  2H5A X;  2Z8U A;  4ROE B;  3PDK A;  2Z0F A;  2I5W A;  1N3A A;  1AXN A;  1LWW A;  1R4X A;  4D7R A;  1N42 A;  1HM6 A;  3HS8 A;  1PBV A;  2PWW A;  2HYV A;  3EAY A;  1J3M A;  2MJ7 A;  1VOK A;  3UW2 A;  3VN5 A;  3ANY A;  1D3U A;  1YTF A;  4TPS A;  1KY7 A;  2H0M A;  1V5S A;  2FGT A;  4X9P A;  4L5M A;  4CFF A;  2DKC A;  3NA5 A;  3KTU A;  4WXA A;  3CWT A;  4FHR B;  1N3C A;  4EJY A;  1QN3 A;  1B9K A;  4MDU A;  1QN5 A;  3BRX A;  1Q9U A;  1AVC A;  2NOL A;  1QN9 A;  4Z21 A;  3ENO C;  1BC3 A;  3CWS A;  1BC0 A;  1HVG A;  1FN7 A;  2ZOC A;  1XJL A;  2ZFD B;  1E42 A;  2ZHI A;  4KMU X;  1WQA A;  1LWV A;  1W80 A;  1WJW A;  3USY A;  5IYC P;  2IV9 A;  1QNC A;  1C4G A;  5F9C A;  5IYD P;  4PY5 A;  1MCX A;  1BCZ A;  2IV8 A;  2H4L X;  1MP9 A;  5BMN A;  1YTB A;  2HYU A;  1XSZ A;  3I0X A;  1VOL B;  4JXH A;  2QR1 A;  4HRE A;  1SAV A;  1QTP A;  2YH5 A;  1YQR A;  3CVT A;  1TUO A;  1KO9 A;  4JMI A;  1TBP A;  3ABQ A;  4JWL A;  1LXT A;  1I4A A;  1DM5 A;  1QNA A;  1UPT B;  1DK5 A;  1G5N A;  2QEZ A;  2HL8 A;  1QNE A;  1QN4 A;  1EBM A;  2OY9 A;  3L8N A;  1PCM X;  3TW5 A;  1N39 A;  1M3Q A;  1ANN A;  2H0L A;  2G30 A;  2HZS A;  1BCY A;  1TBA B;  1RM1 A;  1PCJ X;  2ZHJ A;  4WX8 A;  3AO0 A;  1KU1 A;  2NOB A;  1NGM A;  4JMO A;  1P5G X;  1AOW A;  3CWA A;  2R5X A;  2HKP A;  2II2 A;  2IIC A;  2NVM A;  2HYW A;  3DPU A;  1UL7 A;  2FKF A;  3OLP A;  2XO3 A;  1MPG A;  2HZM A;  3OGD A;  2D0A A;  2OOY A;  1R8Q E;  2D0C A;  1HU0 A;  1C1K A;  1KYD A;  2VJ0 A;  1CDW A;  3CW7 A;  2R09 A;  2HL9 A;  3ASM A;  1EUV A;  4C7P A;  3ABR A;  1M9I A;  4FQ0 C;  4EJZ A;  5IYB P;  1BC9 A;  3T4N A;  3SWV A;  1HVF A;  3SNS A;  4ROD B;  4DUL A;  4B0A A;  2O3O A;  4KN7 X;  2QRC A;  1UT4 A;  4MDV A;  2VXG A;  1JDY A;  2XHI A;  4Q2S A;  2JHJ A;  2F7L A;  4EAI A;  4EVF A;  1AEI A;  1BCW A;  2FKM X;  1Q8D A;  3PMG A;  3ENC A;  2NLV A;  4EVH A;  1HVE A;  1YQK A;  4EAG A;  2Y8Q A;  4ROC B;  1C47 A;  4D7Q A;  3F0Z A;  2IE7 A;  3I0W A;  1QN8 A;  1P5D X;  3HJL A;  1VKL A;  1R8M E;  1KYU A;  1YQM A;  1YCN A;  5JMV D;  1KFQ A;  2V8Q A;  5BMP A;  4A4P A;  3OC3 C;  4QG5 A;  2DKD A;  1VTO A;  1YII A;  2Y8L A;  2YA3 A;  2NOI A;  1AII A;  3OH9 A;  1XT0 B;  1JFI C;  1A8A A;  2H0K A;  3ULX A;  2RAN A;  1HAK A;  4KN4 X; 
#chains in the Genus database with same CATH homology
 4OIY A;  4JK1 X;  3HJL A;  1R8M E;  2K6X A;  1QC7 A;  4Z21 A;  1KU1 A;  1R8Q E;  4A4P A;  4KN7 X;  1PBV A;  1R8S E;  3L8N A;  2R0D A;  4JMI A;  4JMO A;  3SOH B;  3TW5 A;  1LKV X;  4C0A A;  3LTL A;  2R09 A;  4L5M A;  2HSN A;  4C7P A;  4KMU X;  3USW A;  1RE0 B;  4JWL A;  3AJC A;  1XT0 B;  1XSZ A;  4D7R A;  4FQ0 C;  4D7Q A;  4FHR B;  1BC9 A;  4JXH A;  1S9D E;  3USY A;  3SWV A;  1Q8D A;  4KN4 X; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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