4D7RA

Crystal structure of a chimeric protein with the sec7 domain of rickettsia prowazekii ralf and the capping domain of legionella pneumophila ralf
Total Genus 132
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
132
sequence length
355
structure length
355
Chain Sequence
YFQGDSLLKNEVIKLFNDKPKSGIARIKKWCTDNNQDFIAETAKIFYEEKSNLNLEFVGDYLGTDGVDNQKVLESFTKQFDFKEKDYLESLRRFLQSFKLPGEAQKIDRLVESFGTHYYEQNLNIDINSKDAAYILAYQTIMLNTDLHNPSIAKSKKMTFEQLKNNLKGTNESKNFNDNFLKKIYDEIEAKPFKLNFVKTSPGYELTSTTLNKDSTFKKLDSFLHSTDVNINTVFPGIGDNVKTTVDQPKSWLSFFTGYKGTITLTDNKTSAQATIQVYTPNIFSKWLFGEQPRVIIQPGQTKESIDLAAKAAADFSSPVKNFKATYDYEVGDLIKAYDNQKKLITIERNLALKE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords PROLINE/BETAINE TRANSPORTER, RALF
publication title On the Use of Legionella/Rickettsia Chimeras to Investigate the Structure and Regulation of Rickettsia Effector Ralf.
pubmed doi rcsb
source organism Rickettsia prowazekii str. madrid e
molecule tags Signaling protein
total genus 132
structure length 355
sequence length 355
ec nomenclature
pdb deposition date 2014-11-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01369 Sec7 Sec7 domain
A PF01369 Sec7 Sec7 domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.220.20 Mainly Alpha Orthogonal Bundle Annexin V; domain 1 Annexin V; domain 1 4d7rA01
1.10.1000.11 Mainly Alpha Orthogonal Bundle Arf Nucleotide-binding Site Opener; domain 2 Arf Nucleotide-binding Site Opener,domain 2 4d7rA02
3.30.310.140 Alpha Beta 2-Layer Sandwich TATA-Binding Protein sec7 domains 4d7rA03
4JXHA 1XT0B 3SWVA 2R0DA 4JMOA 1BC9A 2R09A 4C0AA 4C7PA 4D7RA 1RE0B 1R8QE 4A4PA 4L5MA 1R8SE 1XSZA 3LTLA 1PBVA 1R8ME 1KU1A 1S9DE 4Z21A 4JMIA 3L8NA 4D7QA 4JWLA 4OIYA
chains in the Genus database with same CATH superfamily
3SOHB 1DK5A 3HJLA 4C7PA 3CW7A 2HZSA 3OSMA 1C9BB 1NVPA 1SAVA 1VKLA 4KN4X 1AEIA 4WX8A 3EAYA 1KYFA 2D0CA 2O3OA 4FHRB 2V8QA 4BJUA 2JHJA 4HJHA 3D7QA 3D4VA 1PCJX 1YIIA 4MDVA 2R5XA 1HM6A 4CFFA 1KU1A 4Z21A 2LAEA 3OCIA 2QRDA 1KYUA 1YTBA 1UT4A 3H1ZA 3OLPA 1M3HA 3I0XA 2H4LX 4FQ0C 1PCZA 1J3MA 1VTOA 1UL7A 4JXHA 3TW5A 3SWVA 2DKAA 3ABSA 1QNAA 1K2YX 2HYUA 4I8OA 3RSMA 4KMUX 3ABQA 2FKFA 4A4PA 1QTPA 5EPCA 1KY7A 1V5SA 4EJZA 3T4NA 4EAJA 3DPTA 1C1KA 1MPGA 4ROEB 1QN3A 2RANA 4MRQA 2MZ8A 2DKCA 3F0ZA 1ANXA 1QTSA 3N89A 2QRCA 3AO0A 1KFQA 1BCYA 1M3QA 3OGDA 1CDWA 4DULA 4ROCB 4EAKA 4OIYA 2HSNA 2OY9A 2Y8LA 1KFIA 1TUOA 1W45A 4Q11A 2Q4CA 1HU0A 2Y8QA 2FUVA 2IE6A 1C4GA 4WXAA 3ULXA 1DM5A 1XJLA 1YCNA 3ENOC 2NLVA 1A8BA 1R8SE 1XSZA 1ALAA 2D0AA 1KY6A 2MJ7A 1S9DE 1UT7A 1YJ0A 2XHIA 4TPSA 4EVHA 1BC9A 2HL9A 3NA5A 5AN4A 2ZHJA 5JN5A 2H0MA 2NOHA 2XO2A 5HSHA 1N42A 1LWWA 1PCMX 3CWSA 1N39A 2YH5A 4X9PA 1W7BA 4JK1X 3CVTA 2NOLA 1EUVA 2NOBA 2NWVA 2Z8UA 3CVSA 3C04A 1N3AA 1NH2A 1M5Q1 1AVHA 2DKDA 1AVCA 5IYBP 2H0LA 4JWLA 2R0DA 1LWYA 1YQMA 3KRMA 2JHNA 1Q8DA 1W80A 2IICA 3VN5A 1R8QE 1NGMA 3SNSA 2FKMX 4EJYA 2H0KA 1E42A 2ZFDB 1K35A 2H5AX 1R8ME 3ASMA 2VJ0A 1Q9UA 4RODB 1P5GX 1B9KA 3HS9A 1BCZA 1VTLE 2ZHIA 3TE5A 1YQLA 3ABRA 1HVGA 3KTUA 1BC3A 1AOWA 2VXGA 1R4XA 1M9IA 2OOXA 2NOIA 2HL8A 3UW2A 1YQRA 5BMNA 1BCWA 3ANYA 2F7LA 4MDUA 1PBVA 3CWAA 1A8AA 1LWVA 1YTFA 4Q2SA 1PZDA 1VOKA 1XT0B 1QN8A 4B0AA 2IV9A 1N3CA 2II2A 1AXNA 5JMVD 1RE0B 1YGMA 3USYA 1AISA 2XO3A 1C47A 4HREA 1PVSA 4PY5A 5F9CA 2JPIA 3I0WA 4EAGA 2V92A 2NOEA 3OC3C 2QREA 1HVFA 1I4AA 4KN7X 5BMPA 2NVMA 1LKVX 1QN7A 2HKPA 2V9JA 4D7RA 4IL8A 3PDKA 1QN5A 1FN7A 2QLVA 4L5MA 2IV8A 2OOYA 1QC7A 1LXTA 1QN6A 3CWTA 2QEZA 2PWWA 3ABOA 2JOIA 1QNEA 3BKQX 1WQAA 2HZMA 3CWUA 4JMOA 1JFIC 1D3UA 2G30A 5KL0A 1VOLB 1UPTB 1QNCA 4EVFA 3I3WA 1BC0A 3AJCA 2ZOCA 3LTLA 1T6AA 1BO9A 3ENCA 3DPUA 2I5WA 2HYWA 1HVEA 1MP9A 3TDHA 2R09A 3IH7A 1KYDA 1N00A 1W3WA 2Z0FA 3OSEA 1JDYA 1N41A 1AIIA 1TBPA 1HAKA 2EHBD 2K6XA 3RPJA 1MCXA 1P5DX 3PMGA 1AVRA 4QG5A 4D7QA 1G5NA 1QN4A 1QNBA 1WJWA 1N44A 4C0AA 3BRXA 1BC1A 1KO9A 2QR1A 2IE7A 4EALA 1QN9A 3EIKA 1ANWA 1R4AE 1ANNA 3L8NA 4EAIA 1HVDA 1YQKA 1TBAB 1DIZA 3HS8A 2D0BA 3OH9A 2NOZA 2YA3A 3USWA 2HYVA 1RM1A 1TGHA 3F10A 5IYCP 1EBMA 3OSTA 4WZSD 2NOFA 4JMIA 2FGTA 3OH6A 5IYDP
chains in the Genus database with same CATH topology
4JXHA 3TW5A 1XT0B 2HSNA 3SWVA 4JK1X 3SOHB 2R0DA 4JMOA 1BC9A 4FHRB 4KN7X 2R09A 3HJLA 4C0AA 1Q8DA 1LKVX 4C7PA 4KMUX 3USWA 1RE0B 4D7RA 3USYA 1R8QE 4A4PA 4L5MA 1R8SE 1XSZA 1QC7A 2K6XA 4FQ0C 3AJCA 3LTLA 1PBVA 4KN4X 1R8ME 1KU1A 1S9DE 4Z21A 4JMIA 3L8NA 4D7QA 4JWLA 4OIYA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4JXH A;  1XT0 B;  3SWV A;  2R0D A;  4JMO A;  1BC9 A;  2R09 A;  4C0A A;  4C7P A;  4D7R A;  1RE0 B;  1R8Q E;  4A4P A;  4L5M A;  1R8S E;  1XSZ A;  3LTL A;  1PBV A;  1R8M E;  1KU1 A;  1S9D E;  4Z21 A;  4JMI A;  3L8N A;  4D7Q A;  4JWL A;  4OIY A; 
#chains in the Genus database with same CATH topology
 3SOH B;  1DK5 A;  3HJL A;  4C7P A;  3CW7 A;  2HZS A;  3OSM A;  1C9B B;  1NVP A;  1SAV A;  1VKL A;  4KN4 X;  1AEI A;  4WX8 A;  3EAY A;  1KYF A;  2D0C A;  2O3O A;  4FHR B;  2V8Q A;  4BJU A;  2JHJ A;  4HJH A;  3D7Q A;  3D4V A;  1PCJ X;  1YII A;  4MDV A;  2R5X A;  1HM6 A;  4CFF A;  1KU1 A;  4Z21 A;  2LAE A;  3OCI A;  2QRD A;  1KYU A;  1YTB A;  1UT4 A;  3H1Z A;  3OLP A;  1M3H A;  3I0X A;  2H4L X;  4FQ0 C;  1PCZ A;  1J3M A;  1VTO A;  1UL7 A;  4JXH A;  3TW5 A;  3SWV A;  2DKA A;  3ABS A;  1QNA A;  1K2Y X;  2HYU A;  4I8O A;  3RSM A;  4KMU X;  3ABQ A;  2FKF A;  4A4P A;  1QTP A;  5EPC A;  1KY7 A;  1V5S A;  4EJZ A;  3T4N A;  4EAJ A;  3DPT A;  1C1K A;  1MPG A;  4ROE B;  1QN3 A;  2RAN A;  4MRQ A;  2MZ8 A;  2DKC A;  3F0Z A;  1ANX A;  1QTS A;  3N89 A;  2QRC A;  3AO0 A;  1KFQ A;  1BCY A;  1M3Q A;  3OGD A;  1CDW A;  4DUL A;  4ROC B;  4EAK A;  4OIY A;  2HSN A;  2OY9 A;  2Y8L A;  1KFI A;  1TUO A;  1W45 A;  4Q11 A;  2Q4C A;  1HU0 A;  2Y8Q A;  2FUV A;  2IE6 A;  1C4G A;  4WXA A;  3ULX A;  1DM5 A;  1XJL A;  1YCN A;  3ENO C;  2NLV A;  1A8B A;  1R8S E;  1XSZ A;  1ALA A;  2D0A A;  1KY6 A;  2MJ7 A;  1S9D E;  1UT7 A;  1YJ0 A;  2XHI A;  4TPS A;  4EVH A;  1BC9 A;  2HL9 A;  3NA5 A;  5AN4 A;  2ZHJ A;  5JN5 A;  2H0M A;  2NOH A;  2XO2 A;  5HSH A;  1N42 A;  1LWW A;  1PCM X;  3CWS A;  1N39 A;  2YH5 A;  4X9P A;  1W7B A;  4JK1 X;  3CVT A;  2NOL A;  1EUV A;  2NOB A;  2NWV A;  2Z8U A;  3CVS A;  3C04 A;  1N3A A;  1NH2 A;  1M5Q 1;  1AVH A;  2DKD A;  1AVC A;  5IYB P;  2H0L A;  4JWL A;  2R0D A;  1LWY A;  1YQM A;  3KRM A;  2JHN A;  1Q8D A;  1W80 A;  2IIC A;  3VN5 A;  1R8Q E;  1NGM A;  3SNS A;  2FKM X;  4EJY A;  2H0K A;  1E42 A;  2ZFD B;  1K35 A;  2H5A X;  1R8M E;  3ASM A;  2VJ0 A;  1Q9U A;  4ROD B;  1P5G X;  1B9K A;  3HS9 A;  1BCZ A;  1VTL E;  2ZHI A;  3TE5 A;  1YQL A;  3ABR A;  1HVG A;  3KTU A;  1BC3 A;  1AOW A;  2VXG A;  1R4X A;  1M9I A;  2OOX A;  2NOI A;  2HL8 A;  3UW2 A;  1YQR A;  5BMN A;  1BCW A;  3ANY A;  2F7L A;  4MDU A;  1PBV A;  3CWA A;  1A8A A;  1LWV A;  1YTF A;  4Q2S A;  1PZD A;  1VOK A;  1XT0 B;  1QN8 A;  4B0A A;  2IV9 A;  1N3C A;  2II2 A;  1AXN A;  5JMV D;  1RE0 B;  1YGM A;  3USY A;  1AIS A;  2XO3 A;  1C47 A;  4HRE A;  1PVS A;  4PY5 A;  5F9C A;  2JPI A;  3I0W A;  4EAG A;  2V92 A;  2NOE A;  3OC3 C;  2QRE A;  1HVF A;  1I4A A;  4KN7 X;  5BMP A;  2NVM A;  1LKV X;  1QN7 A;  2HKP A;  2V9J A;  4D7R A;  4IL8 A;  3PDK A;  1QN5 A;  1FN7 A;  2QLV A;  4L5M A;  2IV8 A;  2OOY A;  1QC7 A;  1LXT A;  1QN6 A;  3CWT A;  2QEZ A;  2PWW A;  3ABO A;  2JOI A;  1QNE A;  3BKQ X;  1WQA A;  2HZM A;  3CWU A;  4JMO A;  1JFI C;  1D3U A;  2G30 A;  5KL0 A;  1VOL B;  1UPT B;  1QNC A;  4EVF A;  3I3W A;  1BC0 A;  3AJC A;  2ZOC A;  3LTL A;  1T6A A;  1BO9 A;  3ENC A;  3DPU A;  2I5W A;  2HYW A;  1HVE A;  1MP9 A;  3TDH A;  2R09 A;  3IH7 A;  1KYD A;  1N00 A;  1W3W A;  2Z0F A;  3OSE A;  1JDY A;  1N41 A;  1AII A;  1TBP A;  1HAK A;  2EHB D;  2K6X A;  3RPJ A;  1MCX A;  1P5D X;  3PMG A;  1AVR A;  4QG5 A;  4D7Q A;  1G5N A;  1QN4 A;  1QNB A;  1WJW A;  1N44 A;  4C0A A;  3BRX A;  1BC1 A;  1KO9 A;  2QR1 A;  2IE7 A;  4EAL A;  1QN9 A;  3EIK A;  1ANW A;  1R4A E;  1ANN A;  3L8N A;  4EAI A;  1HVD A;  1YQK A;  1TBA B;  1DIZ A;  3HS8 A;  2D0B A;  3OH9 A;  2NOZ A;  2YA3 A;  3USW A;  2HYV A;  1RM1 A;  1TGH A;  3F10 A;  5IYC P;  1EBM A;  3OST A;  4WZS D;  2NOF A;  4JMI A;  2FGT A;  3OH6 A;  5IYD P; 
#chains in the Genus database with same CATH homology
 4JXH A;  3TW5 A;  1XT0 B;  2HSN A;  3SWV A;  4JK1 X;  3SOH B;  2R0D A;  4JMO A;  1BC9 A;  4FHR B;  4KN7 X;  2R09 A;  3HJL A;  4C0A A;  1Q8D A;  1LKV X;  4C7P A;  4KMU X;  3USW A;  1RE0 B;  4D7R A;  3USY A;  1R8Q E;  4A4P A;  4L5M A;  1R8S E;  1XSZ A;  1QC7 A;  2K6X A;  4FQ0 C;  3AJC A;  3LTL A;  1PBV A;  4KN4 X;  1R8M E;  1KU1 A;  1S9D E;  4Z21 A;  4JMI A;  3L8N A;  4D7Q A;  4JWL A;  4OIY A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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