4D7RA

Crystal structure of a chimeric protein with the sec7 domain of rickettsia prowazekii ralf and the capping domain of legionella pneumophila ralf
Total Genus 132
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
132
sequence length
355
structure length
355
Chain Sequence
YFQGDSLLKNEVIKLFNDKPKSGIARIKKWCTDNNQDFIAETAKIFYEEKSNLNLEFVGDYLGTDGVDNQKVLESFTKQFDFKEKDYLESLRRFLQSFKLPGEAQKIDRLVESFGTHYYEQNLNIDINSKDAAYILAYQTIMLNTDLHNPSIAKSKKMTFEQLKNNLKGTNESKNFNDNFLKKIYDEIEAKPFKLNFVKTSPGYELTSTTLNKDSTFKKLDSFLHSTDVNINTVFPGIGDNVKTTVDQPKSWLSFFTGYKGTITLTDNKTSAQATIQVYTPNIFSKWLFGEQPRVIIQPGQTKESIDLAAKAAADFSSPVKNFKATYDYEVGDLIKAYDNQKKLITIERNLALKE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords PROLINE/BETAINE TRANSPORTER, RALF
publication title On the Use of Legionella/Rickettsia Chimeras to Investigate the Structure and Regulation of Rickettsia Effector Ralf.
pubmed doi rcsb
source organism Rickettsia prowazekii str. madrid e
molecule tags Signaling protein
total genus 132
structure length 355
sequence length 355
ec nomenclature
pdb deposition date 2014-11-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01369 Sec7 Sec7 domain
A PF01369 Sec7 Sec7 domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.220.20 Mainly Alpha Orthogonal Bundle Annexin V; domain 1 Annexin V; domain 1 4d7rA01
1.10.1000.11 Mainly Alpha Orthogonal Bundle Arf Nucleotide-binding Site Opener; domain 2 Arf Nucleotide-binding Site Opener,domain 2 4d7rA02
3.30.310.140 Alpha Beta 2-Layer Sandwich TATA-Binding Protein sec7 domains 4d7rA03
1R8ME 1XT0B 1PBVA 2R09A 4JWLA 3SWVA 4Z21A 3LTLA 4C7PA 2R0DA 1XSZA 1S9DE 4D7QA 4C0AA 1KU1A 1R8QE 4A4PA 1RE0B 3L8NA 4JMIA 4D7RA 4L5MA 1R8SE 4JMOA 1BC9A 4JXHA 4OIYA
chains in the Genus database with same CATH superfamily
1I4AA 1KY6A 3D7QA 1FN7A 3SWVA 3ABOA 1YTFA 3SNSA 1YQRA 2MJ7A 4KMUX 2NOZA 2I5WA 2HSNA 5IYDP 1C9BB 1WJWA 3OGDA 2HKPA 5HSHA 4ROEB 1UL7A 1QNEA 2Z8UA 1YQLA 5BMNA 1N3AA 1YQMA 3RSMA 1AVRA 2D0AA 2FUVA 3ANYA 2HL9A 1NGMA 3I0XA 1C47A 3VN5A 3OH6A 1K2YX 4RODB 3ENOC 2V92A 1PCMX 1PCZA 1YQKA 2NOIA 1BC1A 1PBVA 2D0CA 2NOBA 1HAKA 1QN6A 1XSZA 3UW2A 1LWWA 1JDYA 3USYA 2QLVA 2YH5A 2MZ8A 1W3WA 4D7QA 3USWA 1MP9A 4EVHA 1XJLA 1EUVA 3NA5A 4B0AA 2QRDA 1TGHA 1R8ME 4IL8A 2H5AX 3RPJA 1MPGA 2NLVA 2H4LX 3PMGA 2NOFA 2EHBD 2Y8QA 5EPCA 1YTBA 1KO9A 1KU1A 4JMIA 1KYFA 3I0WA 1Q8DA 2NWVA 1CDWA 2Q4CA 2O3OA 1KYUA 2XHIA 3IH7A 2OY9A 4Z21A 3TW5A 3PDKA 2JHJA 1QN9A 2IV8A 4BJUA 1UT7A 5AN4A 1AXNA 1QN8A 1SAVA 2YA3A 4ROCB 4L5MA 1C4GA 1QNCA 2F7LA 3OC3C 4TPSA 2RANA 4I8OA 1R4XA 2HYVA 1TUOA 1QC7A 4EVFA 2JOIA 2IE6A 4FHRB 3C04A 3KTUA 3DPTA 1KYDA 1AEIA 1E42A 1R8QE 1N39A 1W80A 3L8NA 2Z0FA 4JMOA 1QN3A 3OLPA 2D0BA 3KRMA 1M3HA 1KFIA 1EBMA 4FQ0C 1MCXA 1XT0B 2HYWA 1UPTB 4Q11A 1AIIA 3CWAA 3HJLA 2V8QA 2ZFDB 1K35A 2NVMA 4PY5A 1PZDA 4KN4X 1YIIA 1JFIC 2JPIA 3ASMA 3ABQA 3CW7A 2QEZA 1VTLE 1BCYA 3HS9A 1KY7A 5BMPA 3OSTA 1NH2A 2HYUA 1QN7A 3ABSA 1VOLB 1YGMA 1M9IA 3CWSA 4QG5A 1DM5A 4JXHA 2PWWA 3EAYA 2IICA 2IE7A 1Q9UA 1P5DX 4EJYA 2R0DA 1M5Q1 4X9PA 4EJZA 2DKAA 1G5NA 2H0LA 1N42A 2II2A 2QRCA 2QREA 2ZHIA 1N3CA 5JMVD 1M3QA 5IYCP 3EIKA 3I3WA 4C0AA 1HVFA 3H1ZA 1AISA 4D7RA 4WZSD 1R8SE 1QTPA 1VKLA 1AVHA 2HZMA 1BCZA 1ANNA 1HVGA 1B9KA 3OSMA 4MDUA 3OCIA 3N89A 1T6AA 1R4AE 5JN5A 1C1KA 3OH9A 3SOHB 1BC9A 2NOEA 1BC0A 3LTLA 1HM6A 1HVDA 1VOKA 2K6XA 4HREA 1BO9A 1TBAB 3OSEA 1A8AA 2VXGA 3F0ZA 4MRQA 2QR1A 4DULA 1DIZA 1QTSA 2H0KA 2HZSA 1RM1A 1J3MA 2FKMX 4EALA 3AJCA 2G30A 1BCWA 1QNAA 1ALAA 1W45A 1TBPA 5KL0A 3ABRA 1D3UA 2LAEA 1N41A 1RE0B 2XO3A 3ULXA 1YCNA 2OOYA 3HS8A 2H0MA 2V9JA 4WX8A 4CFFA 1P5GX 4HJHA 2R09A 1YJ0A 4JWLA 3CVTA 3BKQX 4EAIA 1BC3A 1S9DE 1AVCA 1LXTA 1VTOA 3CWTA 1W7BA 2VJ0A 5F9CA 1ANXA 2FKFA 3CWUA 2JHNA 4C7PA 1QN4A 3TDHA 2R5XA 1HVEA 2ZOCA 3D4VA 4JK1X 1KFQA 3T4NA 2NOLA 2HL8A 2XO2A 4OIYA 2FGTA 1QNBA 1WQAA 2ZHJA 1A8BA 2DKDA 3CVSA 1UT4A 4EAKA 4EAJA 1LWVA 4WXAA 4A4PA 1PCJX 1NVPA 3DPUA 2DKCA 2NOHA 1LKVX 1V5SA 1PVSA 1N00A 1LWYA 4KN7X 4EAGA 1QN5A 5IYBP 1ANWA 1HU0A 2Y8LA 3BRXA 3AO0A 4MDVA 3F10A 2IV9A 4Q2SA 2OOXA 1DK5A 3ENCA 1N44A 3TE5A 1AOWA
chains in the Genus database with same CATH topology
1R8ME 4FQ0C 1XT0B 1PBVA 1QC7A 3AJCA 2R09A 4FHRB 4JWLA 3SWVA 4Z21A 4OIYA 3LTLA 4C7PA 2R0DA 3HJLA 4KMUX 4KN7X 2K6XA 3TW5A 1XSZA 2HSNA 3USYA 1S9DE 4KN4X 4JK1X 4D7QA 3USWA 4C0AA 1KU1A 1R8QE 4A4PA 1RE0B 3L8NA 4JMIA 4D7RA 4L5MA 3SOHB 1R8SE 4JMOA 1LKVX 1BC9A 4JXHA 1Q8DA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1R8M E;  1XT0 B;  1PBV A;  2R09 A;  4JWL A;  3SWV A;  4Z21 A;  3LTL A;  4C7P A;  2R0D A;  1XSZ A;  1S9D E;  4D7Q A;  4C0A A;  1KU1 A;  1R8Q E;  4A4P A;  1RE0 B;  3L8N A;  4JMI A;  4D7R A;  4L5M A;  1R8S E;  4JMO A;  1BC9 A;  4JXH A;  4OIY A; 
#chains in the Genus database with same CATH topology
 1I4A A;  1KY6 A;  3D7Q A;  1FN7 A;  3SWV A;  3ABO A;  1YTF A;  3SNS A;  1YQR A;  2MJ7 A;  4KMU X;  2NOZ A;  2I5W A;  2HSN A;  5IYD P;  1C9B B;  1WJW A;  3OGD A;  2HKP A;  5HSH A;  4ROE B;  1UL7 A;  1QNE A;  2Z8U A;  1YQL A;  5BMN A;  1N3A A;  1YQM A;  3RSM A;  1AVR A;  2D0A A;  2FUV A;  3ANY A;  2HL9 A;  1NGM A;  3I0X A;  1C47 A;  3VN5 A;  3OH6 A;  1K2Y X;  4ROD B;  3ENO C;  2V92 A;  1PCM X;  1PCZ A;  1YQK A;  2NOI A;  1BC1 A;  1PBV A;  2D0C A;  2NOB A;  1HAK A;  1QN6 A;  1XSZ A;  3UW2 A;  1LWW A;  1JDY A;  3USY A;  2QLV A;  2YH5 A;  2MZ8 A;  1W3W A;  4D7Q A;  3USW A;  1MP9 A;  4EVH A;  1XJL A;  1EUV A;  3NA5 A;  4B0A A;  2QRD A;  1TGH A;  1R8M E;  4IL8 A;  2H5A X;  3RPJ A;  1MPG A;  2NLV A;  2H4L X;  3PMG A;  2NOF A;  2EHB D;  2Y8Q A;  5EPC A;  1YTB A;  1KO9 A;  1KU1 A;  4JMI A;  1KYF A;  3I0W A;  1Q8D A;  2NWV A;  1CDW A;  2Q4C A;  2O3O A;  1KYU A;  2XHI A;  3IH7 A;  2OY9 A;  4Z21 A;  3TW5 A;  3PDK A;  2JHJ A;  1QN9 A;  2IV8 A;  4BJU A;  1UT7 A;  5AN4 A;  1AXN A;  1QN8 A;  1SAV A;  2YA3 A;  4ROC B;  4L5M A;  1C4G A;  1QNC A;  2F7L A;  3OC3 C;  4TPS A;  2RAN A;  4I8O A;  1R4X A;  2HYV A;  1TUO A;  1QC7 A;  4EVF A;  2JOI A;  2IE6 A;  4FHR B;  3C04 A;  3KTU A;  3DPT A;  1KYD A;  1AEI A;  1E42 A;  1R8Q E;  1N39 A;  1W80 A;  3L8N A;  2Z0F A;  4JMO A;  1QN3 A;  3OLP A;  2D0B A;  3KRM A;  1M3H A;  1KFI A;  1EBM A;  4FQ0 C;  1MCX A;  1XT0 B;  2HYW A;  1UPT B;  4Q11 A;  1AII A;  3CWA A;  3HJL A;  2V8Q A;  2ZFD B;  1K35 A;  2NVM A;  4PY5 A;  1PZD A;  4KN4 X;  1YII A;  1JFI C;  2JPI A;  3ASM A;  3ABQ A;  3CW7 A;  2QEZ A;  1VTL E;  1BCY A;  3HS9 A;  1KY7 A;  5BMP A;  3OST A;  1NH2 A;  2HYU A;  1QN7 A;  3ABS A;  1VOL B;  1YGM A;  1M9I A;  3CWS A;  4QG5 A;  1DM5 A;  4JXH A;  2PWW A;  3EAY A;  2IIC A;  2IE7 A;  1Q9U A;  1P5D X;  4EJY A;  2R0D A;  1M5Q 1;  4X9P A;  4EJZ A;  2DKA A;  1G5N A;  2H0L A;  1N42 A;  2II2 A;  2QRC A;  2QRE A;  2ZHI A;  1N3C A;  5JMV D;  1M3Q A;  5IYC P;  3EIK A;  3I3W A;  4C0A A;  1HVF A;  3H1Z A;  1AIS A;  4D7R A;  4WZS D;  1R8S E;  1QTP A;  1VKL A;  1AVH A;  2HZM A;  1BCZ A;  1ANN A;  1HVG A;  1B9K A;  3OSM A;  4MDU A;  3OCI A;  3N89 A;  1T6A A;  1R4A E;  5JN5 A;  1C1K A;  3OH9 A;  3SOH B;  1BC9 A;  2NOE A;  1BC0 A;  3LTL A;  1HM6 A;  1HVD A;  1VOK A;  2K6X A;  4HRE A;  1BO9 A;  1TBA B;  3OSE A;  1A8A A;  2VXG A;  3F0Z A;  4MRQ A;  2QR1 A;  4DUL A;  1DIZ A;  1QTS A;  2H0K A;  2HZS A;  1RM1 A;  1J3M A;  2FKM X;  4EAL A;  3AJC A;  2G30 A;  1BCW A;  1QNA A;  1ALA A;  1W45 A;  1TBP A;  5KL0 A;  3ABR A;  1D3U A;  2LAE A;  1N41 A;  1RE0 B;  2XO3 A;  3ULX A;  1YCN A;  2OOY A;  3HS8 A;  2H0M A;  2V9J A;  4WX8 A;  4CFF A;  1P5G X;  4HJH A;  2R09 A;  1YJ0 A;  4JWL A;  3CVT A;  3BKQ X;  4EAI A;  1BC3 A;  1S9D E;  1AVC A;  1LXT A;  1VTO A;  3CWT A;  1W7B A;  2VJ0 A;  5F9C A;  1ANX A;  2FKF A;  3CWU A;  2JHN A;  4C7P A;  1QN4 A;  3TDH A;  2R5X A;  1HVE A;  2ZOC A;  3D4V A;  4JK1 X;  1KFQ A;  3T4N A;  2NOL A;  2HL8 A;  2XO2 A;  4OIY A;  2FGT A;  1QNB A;  1WQA A;  2ZHJ A;  1A8B A;  2DKD A;  3CVS A;  1UT4 A;  4EAK A;  4EAJ A;  1LWV A;  4WXA A;  4A4P A;  1PCJ X;  1NVP A;  3DPU A;  2DKC A;  2NOH A;  1LKV X;  1V5S A;  1PVS A;  1N00 A;  1LWY A;  4KN7 X;  4EAG A;  1QN5 A;  5IYB P;  1ANW A;  1HU0 A;  2Y8L A;  3BRX A;  3AO0 A;  4MDV A;  3F10 A;  2IV9 A;  4Q2S A;  2OOX A;  1DK5 A;  3ENC A;  1N44 A;  3TE5 A;  1AOW A; 
#chains in the Genus database with same CATH homology
 1R8M E;  4FQ0 C;  1XT0 B;  1PBV A;  1QC7 A;  3AJC A;  2R09 A;  4FHR B;  4JWL A;  3SWV A;  4Z21 A;  4OIY A;  3LTL A;  4C7P A;  2R0D A;  3HJL A;  4KMU X;  4KN7 X;  2K6X A;  3TW5 A;  1XSZ A;  2HSN A;  3USY A;  1S9D E;  4KN4 X;  4JK1 X;  4D7Q A;  3USW A;  4C0A A;  1KU1 A;  1R8Q E;  4A4P A;  1RE0 B;  3L8N A;  4JMI A;  4D7R A;  4L5M A;  3SOH B;  1R8S E;  4JMO A;  1LKV X;  1BC9 A;  4JXH A;  1Q8D A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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