4D7RA

Crystal structure of a chimeric protein with the sec7 domain of rickettsia prowazekii ralf and the capping domain of legionella pneumophila ralf
Total Genus 132
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
132
sequence length
355
structure length
355
Chain Sequence
YFQGDSLLKNEVIKLFNDKPKSGIARIKKWCTDNNQDFIAETAKIFYEEKSNLNLEFVGDYLGTDGVDNQKVLESFTKQFDFKEKDYLESLRRFLQSFKLPGEAQKIDRLVESFGTHYYEQNLNIDINSKDAAYILAYQTIMLNTDLHNPSIAKSKKMTFEQLKNNLKGTNESKNFNDNFLKKIYDEIEAKPFKLNFVKTSPGYELTSTTLNKDSTFKKLDSFLHSTDVNINTVFPGIGDNVKTTVDQPKSWLSFFTGYKGTITLTDNKTSAQATIQVYTPNIFSKWLFGEQPRVIIQPGQTKESIDLAAKAAADFSSPVKNFKATYDYEVGDLIKAYDNQKKLITIERNLALKE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Signaling protein
source organism Rickettsia prowazekii str. madrid e
publication title On the Use of Legionella/Rickettsia Chimeras to Investigate the Structure and Regulation of Rickettsia Effector Ralf.
pubmed doi rcsb
molecule keywords PROLINE/BETAINE TRANSPORTER, RALF
total genus 132
structure length 355
sequence length 355
ec nomenclature
pdb deposition date 2014-11-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01369 Sec7 Sec7 domain
A PF01369 Sec7 Sec7 domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.220.20 Mainly Alpha Orthogonal Bundle Annexin V; domain 1 Annexin V; domain 1 4d7rA01
1.10.1000.11 Mainly Alpha Orthogonal Bundle Arf Nucleotide-binding Site Opener; domain 2 Arf Nucleotide-binding Site Opener,domain 2 4d7rA02
3.30.310.140 Alpha Beta 2-Layer Sandwich TATA-Binding Protein sec7 domains 4d7rA03
4JMOA 1R8SE 2R09A 4A4PA 2R0DA 1S9DE 3SWVA 1KU1A 4L5MA 1RE0B 4C7PA 4Z21A 1XSZA 3L8NA 4OIYA 3LTLA 4D7RA 4JMIA 1BC9A 1XT0B 4JWLA 1R8ME 4C0AA 1R8QE 1PBVA 4JXHA 4D7QA
chains in the Genus database with same CATH superfamily
2IV9A 1KYUA 2R09A 2NVMA 4WZSD 1QC7A 2JOIA 4Z21A 2RANA 1AOWA 2YA3A 4PY5A 3TDHA 3HS9A 1N41A 3OC3C 2IV8A 1LXTA 1MCXA 1KY6A 4TPSA 3D7QA 1QTSA 1R8ME 5AN4A 1ANXA 3OGDA 1DK5A 2ZHIA 1HVDA 2HKPA 3USWA 1TGHA 1XJLA 3N89A 3DPTA 3ULXA 1AEIA 4KMUX 1M3HA 2FUVA 3EIKA 1QN9A 1G5NA 4OIYA 1KO9A 1MPGA 1Q8DA 1KFIA 2O3OA 1Q9UA 1R4AE 3SOHB 4EJZA 1NH2A 1N00A 5BMNA 3IH7A 3D4VA 3H1ZA 2HZMA 2HZSA 2HYWA 2NOBA 1C1KA 4BJUA 3PDKA 1PCZA 1VOLB 1C47A 2QR1A 5IYBP 3ABQA 3KTUA 1QNBA 3OH9A 4CFFA 1E42A 3CVTA 1N3AA 1MP9A 2YH5A 2HYVA 3C04A 5KL0A 1R4XA 1UL7A 4KN7X 4EJYA 1LWYA 2R5XA 4MDVA 1KYDA 1ANWA 1BO9A 1WQAA 1QNAA 2Z0FA 3ENOC 2XHIA 1UT7A 2LAEA 5F9CA 1VTOA 3OCIA 2IE6A 2EHBD 3I0XA 4C7PA 1YCNA 2D0CA 1YQKA 1W7BA 1AVCA 3OSEA 3F0ZA 5IYCP 1I4AA 4FQ0C 1BC9A 2VXGA 1W45A 1PZDA 1LWVA 4B0AA 2V8QA 4X9PA 1UPTB 1R8SE 3CWUA 1C9BB 2NWVA 1J3MA 2DKDA 3HS8A 1TUOA 1YTFA 2NOHA 2IICA 2MJ7A 1AVRA 1HM6A 2IE7A 1KY7A 3UW2A 3TW5A 3T4NA 1JFIC 1N3CA 1PBVA 2H0MA 1M3QA 3ANYA 3BRXA 4HREA 2ZOCA 4EAGA 4JK1X 2DKCA 3EAYA 3CWTA 2V9JA 4EVHA 1HAKA 1VOKA 1P5GX 4JMIA 2QREA 1FN7A 3OH6A 2H4LX 5IYDP 4A4PA 3AJCA 1VKLA 3RSMA 1KYFA 1SAVA 3CWAA 3CW7A 1K2YX 1YJ0A 2JPIA 2FGTA 2Q4CA 2H0LA 4WX8A 4D7QA 2HL9A 1QN7A 4RODB 3NA5A 2HYUA 2D0BA 3OSTA 2QRDA 3OSMA 4ROEB 4EAJA 1KU1A 2V92A 4L5MA 1JDYA 2II2A 3USYA 1EBMA 1PCMX 2NOLA 3HJLA 2OY9A 1A8AA 2FKMX 3TE5A 1BC3A 3I0WA 1QN3A 1NVPA 2JHJA 2PWWA 1HVGA 1PVSA 4QG5A 3ABSA 2ZHJA 4I8OA 4FHRB 4D7RA 3RPJA 5JMVD 2QEZA 3I3WA 2NOEA 2F7LA 2DKAA 1YGMA 1W80A 1QN4A 2K6XA 4MDUA 2HSNA 1XT0B 3F10A 1BC0A 2XO2A 1RM1A 1BCZA 3DPUA 5JN5A 2R0DA 3PMGA 1YQMA 1S9DE 1HU0A 3SWVA 4EAKA 1A8BA 2I5WA 1ANNA 1XSZA 1B9KA 2G30A 1AISA 1VTLE 2JHNA 1K35A 2VJ0A 3ABOA 4JMOA 5EPCA 2NOFA 2ZFDB 1BCWA 1BC1A 2Z8UA 1QNEA 1T6AA 4WXAA 1HVFA 3ABRA 1PCJX 4ROCB 1N44A 1M9IA 1UT4A 1V5SA 4MRQA 1AIIA 4JWLA 4Q11A 4EVFA 1R8QE 2Y8QA 4KN4X 3AO0A 3VN5A 2QRCA 4EAIA 2FKFA 1N42A 1QN8A 3CWSA 2HL8A 1AVHA 3BKQX 1NGMA 1YTBA 1HVEA 2OOYA 2MZ8A 1KFQA 2H5AX 1QTPA 2XO3A 1D3UA 4HJHA 1QN5A 2NLVA 4C0AA 1DM5A 1CDWA 3CVSA 5BMPA 1YQRA 2H0KA 1LWWA 1W3WA 2D0AA 1EUVA 3SNSA 3L8NA 1LKVX 3LTLA 4DULA 2Y8LA 1DIZA 1P5DX 1M5Q1 4IL8A 2NOZA 1TBAB 5HSHA 2QLVA 4EALA 3ENCA 1C4GA 1RE0B 1N39A 2NOIA 1QNCA 1YIIA 1AXNA 1WJWA 1QN6A 2OOXA 1ALAA 3KRMA 3OLPA 4Q2SA 1BCYA 1YQLA 3ASMA 4JXHA 1TBPA
chains in the Genus database with same CATH topology
4JMOA 1R8SE 4KN4X 2R09A 4A4PA 4KN7X 3USWA 4JK1X 2R0DA 1S9DE 3AJCA 3SWVA 1KU1A 4L5MA 1RE0B 4C7PA 4KMUX 1QC7A 4Z21A 1XSZA 3L8NA 2K6XA 1LKVX 4OIYA 3USYA 1Q8DA 3LTLA 3TW5A 4FHRB 4D7RA 2HSNA 3HJLA 4JMIA 4FQ0C 1BC9A 1XT0B 4JWLA 1R8ME 4C0AA 1R8QE 1PBVA 3SOHB 4JXHA 4D7QA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4JMO A;  1R8S E;  2R09 A;  4A4P A;  2R0D A;  1S9D E;  3SWV A;  1KU1 A;  4L5M A;  1RE0 B;  4C7P A;  4Z21 A;  1XSZ A;  3L8N A;  4OIY A;  3LTL A;  4D7R A;  4JMI A;  1BC9 A;  1XT0 B;  4JWL A;  1R8M E;  4C0A A;  1R8Q E;  1PBV A;  4JXH A;  4D7Q A; 
#chains in the Genus database with same CATH topology
 2IV9 A;  1KYU A;  2R09 A;  2NVM A;  4WZS D;  1QC7 A;  2JOI A;  4Z21 A;  2RAN A;  1AOW A;  2YA3 A;  4PY5 A;  3TDH A;  3HS9 A;  1N41 A;  3OC3 C;  2IV8 A;  1LXT A;  1MCX A;  1KY6 A;  4TPS A;  3D7Q A;  1QTS A;  1R8M E;  5AN4 A;  1ANX A;  3OGD A;  1DK5 A;  2ZHI A;  1HVD A;  2HKP A;  3USW A;  1TGH A;  1XJL A;  3N89 A;  3DPT A;  3ULX A;  1AEI A;  4KMU X;  1M3H A;  2FUV A;  3EIK A;  1QN9 A;  1G5N A;  4OIY A;  1KO9 A;  1MPG A;  1Q8D A;  1KFI A;  2O3O A;  1Q9U A;  1R4A E;  3SOH B;  4EJZ A;  1NH2 A;  1N00 A;  5BMN A;  3IH7 A;  3D4V A;  3H1Z A;  2HZM A;  2HZS A;  2HYW A;  2NOB A;  1C1K A;  4BJU A;  3PDK A;  1PCZ A;  1VOL B;  1C47 A;  2QR1 A;  5IYB P;  3ABQ A;  3KTU A;  1QNB A;  3OH9 A;  4CFF A;  1E42 A;  3CVT A;  1N3A A;  1MP9 A;  2YH5 A;  2HYV A;  3C04 A;  5KL0 A;  1R4X A;  1UL7 A;  4KN7 X;  4EJY A;  1LWY A;  2R5X A;  4MDV A;  1KYD A;  1ANW A;  1BO9 A;  1WQA A;  1QNA A;  2Z0F A;  3ENO C;  2XHI A;  1UT7 A;  2LAE A;  5F9C A;  1VTO A;  3OCI A;  2IE6 A;  2EHB D;  3I0X A;  4C7P A;  1YCN A;  2D0C A;  1YQK A;  1W7B A;  1AVC A;  3OSE A;  3F0Z A;  5IYC P;  1I4A A;  4FQ0 C;  1BC9 A;  2VXG A;  1W45 A;  1PZD A;  1LWV A;  4B0A A;  2V8Q A;  4X9P A;  1UPT B;  1R8S E;  3CWU A;  1C9B B;  2NWV A;  1J3M A;  2DKD A;  3HS8 A;  1TUO A;  1YTF A;  2NOH A;  2IIC A;  2MJ7 A;  1AVR A;  1HM6 A;  2IE7 A;  1KY7 A;  3UW2 A;  3TW5 A;  3T4N A;  1JFI C;  1N3C A;  1PBV A;  2H0M A;  1M3Q A;  3ANY A;  3BRX A;  4HRE A;  2ZOC A;  4EAG A;  4JK1 X;  2DKC A;  3EAY A;  3CWT A;  2V9J A;  4EVH A;  1HAK A;  1VOK A;  1P5G X;  4JMI A;  2QRE A;  1FN7 A;  3OH6 A;  2H4L X;  5IYD P;  4A4P A;  3AJC A;  1VKL A;  3RSM A;  1KYF A;  1SAV A;  3CWA A;  3CW7 A;  1K2Y X;  1YJ0 A;  2JPI A;  2FGT A;  2Q4C A;  2H0L A;  4WX8 A;  4D7Q A;  2HL9 A;  1QN7 A;  4ROD B;  3NA5 A;  2HYU A;  2D0B A;  3OST A;  2QRD A;  3OSM A;  4ROE B;  4EAJ A;  1KU1 A;  2V92 A;  4L5M A;  1JDY A;  2II2 A;  3USY A;  1EBM A;  1PCM X;  2NOL A;  3HJL A;  2OY9 A;  1A8A A;  2FKM X;  3TE5 A;  1BC3 A;  3I0W A;  1QN3 A;  1NVP A;  2JHJ A;  2PWW A;  1HVG A;  1PVS A;  4QG5 A;  3ABS A;  2ZHJ A;  4I8O A;  4FHR B;  4D7R A;  3RPJ A;  5JMV D;  2QEZ A;  3I3W A;  2NOE A;  2F7L A;  2DKA A;  1YGM A;  1W80 A;  1QN4 A;  2K6X A;  4MDU A;  2HSN A;  1XT0 B;  3F10 A;  1BC0 A;  2XO2 A;  1RM1 A;  1BCZ A;  3DPU A;  5JN5 A;  2R0D A;  3PMG A;  1YQM A;  1S9D E;  1HU0 A;  3SWV A;  4EAK A;  1A8B A;  2I5W A;  1ANN A;  1XSZ A;  1B9K A;  2G30 A;  1AIS A;  1VTL E;  2JHN A;  1K35 A;  2VJ0 A;  3ABO A;  4JMO A;  5EPC A;  2NOF A;  2ZFD B;  1BCW A;  1BC1 A;  2Z8U A;  1QNE A;  1T6A A;  4WXA A;  1HVF A;  3ABR A;  1PCJ X;  4ROC B;  1N44 A;  1M9I A;  1UT4 A;  1V5S A;  4MRQ A;  1AII A;  4JWL A;  4Q11 A;  4EVF A;  1R8Q E;  2Y8Q A;  4KN4 X;  3AO0 A;  3VN5 A;  2QRC A;  4EAI A;  2FKF A;  1N42 A;  1QN8 A;  3CWS A;  2HL8 A;  1AVH A;  3BKQ X;  1NGM A;  1YTB A;  1HVE A;  2OOY A;  2MZ8 A;  1KFQ A;  2H5A X;  1QTP A;  2XO3 A;  1D3U A;  4HJH A;  1QN5 A;  2NLV A;  4C0A A;  1DM5 A;  1CDW A;  3CVS A;  5BMP A;  1YQR A;  2H0K A;  1LWW A;  1W3W A;  2D0A A;  1EUV A;  3SNS A;  3L8N A;  1LKV X;  3LTL A;  4DUL A;  2Y8L A;  1DIZ A;  1P5D X;  1M5Q 1;  4IL8 A;  2NOZ A;  1TBA B;  5HSH A;  2QLV A;  4EAL A;  3ENC A;  1C4G A;  1RE0 B;  1N39 A;  2NOI A;  1QNC A;  1YII A;  1AXN A;  1WJW A;  1QN6 A;  2OOX A;  1ALA A;  3KRM A;  3OLP A;  4Q2S A;  1BCY A;  1YQL A;  3ASM A;  4JXH A;  1TBP A; 
#chains in the Genus database with same CATH homology
 4JMO A;  1R8S E;  4KN4 X;  2R09 A;  4A4P A;  4KN7 X;  3USW A;  4JK1 X;  2R0D A;  1S9D E;  3AJC A;  3SWV A;  1KU1 A;  4L5M A;  1RE0 B;  4C7P A;  4KMU X;  1QC7 A;  4Z21 A;  1XSZ A;  3L8N A;  2K6X A;  1LKV X;  4OIY A;  3USY A;  1Q8D A;  3LTL A;  3TW5 A;  4FHR B;  4D7R A;  2HSN A;  3HJL A;  4JMI A;  4FQ0 C;  1BC9 A;  1XT0 B;  4JWL A;  1R8M E;  4C0A A;  1R8Q E;  1PBV A;  3SOH B;  4JXH A;  4D7Q A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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