4Q2SA

Crystal structure of s. pombe pdc1 ge1 domain
Total Genus 60
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
60
sequence length
136
structure length
136
Chain Sequence
IAESLRRLKEYVKAGSVKECVAEWCNMPSVAGFDVLSEISYDRMLENCSNLLLLTFIYHISLLDSVDDDRLSKRMEYISRICLNIDVNDPKVETVVHPVLTLTREALLRQSEFFSPIFKRRLVVLLRALDGKISEI
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords PDC1 GE1 DOMAIN
publication title In vitro reconstitution of a cellular phase-transition process that involves the mRNA decapping machinery.
pubmed doi rcsb
source organism Schizosaccharomyces pombe
molecule tags Rna binding protein
total genus 60
structure length 136
sequence length 136
ec nomenclature
pdb deposition date 2014-04-09
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.220.100 Mainly Alpha Orthogonal Bundle Annexin V; domain 1 conserved c-terminal region of ge- 1 4q2sA00
4Q2SA 2VXGA
chains in the Genus database with same CATH superfamily
3ABRA 2OY9A 1LKVX 1HM6A 2QEZA 1HVDA 1MCXA 2HYUA 1N41A 1R8QE 4X9PA 3ABOA 2ZHIA 4KN7X 4D7QA 1HVGA 3SWVA 4EVHA 1BO9A 1R8SE 2HYWA 1AIIA 4MDVA 3HJLA 4D7RA 2ZHJA 4JMIA 3AO0A 1YIIA 2ZOCA 1R8ME 2R09A 4OIYA 1S9DE 1HAKA 1BCYA 1AEIA 1ALAA 1HVFA 4JWLA 1SAVA 2Q4CA 1AXNA 2VXGA 3USWA 1DK5A 4FQ0C 4C7PA 1HVEA 1BC3A 1C1KA 2R0DA 2IE7A 4A4PA 4Z21A 1R4AE 1I4AA 1UPTB 2HYVA 3TW5A 1ANWA 4FHRB 2K6XA 3SOHB 1W7BA 2RANA 1M9IA 2H0LA 3ABSA 4HREA 2IICA 1YJ0A 4L5MA 2H0MA 2XO3A 2HSNA 1AVRA 1DM5A 3ANYA 1W45A 1ANNA 4MDUA 3LTLA 3AJCA 3BRXA 1BC1A 1G5NA 1ANXA 1N42A 1W3WA 4EVFA 1Q8DA 1KU1A 1XT0B 2II2A 4C0AA 1XJLA 1XSZA 1BC0A 1AVCA 3L8NA 2H0KA 1YCNA 1YGMA 1BCWA 4JK1X 1A8AA 4Q2SA 1RE0B 1N44A 1QC7A 4JXHA 1BC9A 2XO2A 1PBVA 1A8BA 1AVHA 4KMUX 1AOWA 1N00A 4JMOA 1BCZA 3USYA 2IE6A 3ABQA 4KN4X
chains in the Genus database with same CATH topology
4Q2SA 2VXGA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4Q2S A;  2VXG A; 
#chains in the Genus database with same CATH topology
 3ABR A;  2OY9 A;  1LKV X;  1HM6 A;  2QEZ A;  1HVD A;  1MCX A;  2HYU A;  1N41 A;  1R8Q E;  4X9P A;  3ABO A;  2ZHI A;  4KN7 X;  4D7Q A;  1HVG A;  3SWV A;  4EVH A;  1BO9 A;  1R8S E;  2HYW A;  1AII A;  4MDV A;  3HJL A;  4D7R A;  2ZHJ A;  4JMI A;  3AO0 A;  1YII A;  2ZOC A;  1R8M E;  2R09 A;  4OIY A;  1S9D E;  1HAK A;  1BCY A;  1AEI A;  1ALA A;  1HVF A;  4JWL A;  1SAV A;  2Q4C A;  1AXN A;  2VXG A;  3USW A;  1DK5 A;  4FQ0 C;  4C7P A;  1HVE A;  1BC3 A;  1C1K A;  2R0D A;  2IE7 A;  4A4P A;  4Z21 A;  1R4A E;  1I4A A;  1UPT B;  2HYV A;  3TW5 A;  1ANW A;  4FHR B;  2K6X A;  3SOH B;  1W7B A;  2RAN A;  1M9I A;  2H0L A;  3ABS A;  4HRE A;  2IIC A;  1YJ0 A;  4L5M A;  2H0M A;  2XO3 A;  2HSN A;  1AVR A;  1DM5 A;  3ANY A;  1W45 A;  1ANN A;  4MDU A;  3LTL A;  3AJC A;  3BRX A;  1BC1 A;  1G5N A;  1ANX A;  1N42 A;  1W3W A;  4EVF A;  1Q8D A;  1KU1 A;  1XT0 B;  2II2 A;  4C0A A;  1XJL A;  1XSZ A;  1BC0 A;  1AVC A;  3L8N A;  2H0K A;  1YCN A;  1YGM A;  1BCW A;  4JK1 X;  1A8A A;  4Q2S A;  1RE0 B;  1N44 A;  1QC7 A;  4JXH A;  1BC9 A;  2XO2 A;  1PBV A;  1A8B A;  1AVH A;  4KMU X;  1AOW A;  1N00 A;  4JMO A;  1BCZ A;  3USY A;  2IE6 A;  3ABQ A;  4KN4 X; 
#chains in the Genus database with same CATH homology
 4Q2S A;  2VXG A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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