1BC0 | Genus

Total Genus 128

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	128
sequence length	318
structure length	318
Chain Sequence	ALRGTVTDFSGFDGRADAEVLRKAMKGLGTDEDSILNLLTARSNAQRQQIAEEFKTLFGRDLVNDMKSELTGKFEKLIVALMKPSRLYDAYELKHALKGAGTDEKVLTEIIASRTPEELRAIKQAYEEEYGSNLEDDVVGDTSGYYQRMLVVLLQANRDPDTAIDDAQVELDAQALFQAGELKAGTDEEKFITILGTRSVSHLRRVFDKYMTISGFQIEETIDRETSGNLENLLLAVVKSIRSIPAYLAETLYYAMKGAGTDDHTLIRVIVSRSEIDLFNIRKEFRKNFATSLYSMIKGDTSGDYKKALLLLCGGEDD

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 318 atoms

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318 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Calcium-binding protein
source organism	Rattus norvegicus
publication title	Mutational and crystallographic analyses of interfacial residues in annexin V suggest direct interactions with phospholipid membrane components. pubmed doi rcsb
molecule keywords	ANNEXIN V
total genus	128
structure length	318
sequence length	318
ec nomenclature
pdb deposition date	1998-05-04

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00191	Annexin	Annexin

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.10.220.10	Mainly Alpha	Orthogonal Bundle	Annexin V; domain 1	Annexin	1bc0A02
1.10.220.10	Mainly Alpha	Orthogonal Bundle	Annexin V; domain 1	Annexin	1bc0A04
1.10.220.10	Mainly Alpha	Orthogonal Bundle	Annexin V; domain 1	Annexin	1bc0A01
1.10.220.10	Mainly Alpha	Orthogonal Bundle	Annexin V; domain 1	Annexin	1bc0A03

2ZOCA 1XJLA 1A8AA 1M9IA 1BC3A 1ANNA 1YIIA 1BC1A 4EVFA 1G5NA 2II2A 2H0MA 2ZHIA 1ANXA 2IE6A 1BCWA 2HYWA 1BCZA 1HVGA 1HAKA 1BCYA 2RANA 1AVCA 1MCXA 1DK5A 1AEIA 1N41A 1N42A 4X9PA 1I4AA 2IICA 1AOWA 1AVHA 1W7BA 1YCNA 1HM6A 2HYUA 1HVFA 1N00A 1BC0A 2Q4CA 4EVHA 1A8BA 1BO9A 1AVRA 2H0KA 2XO3A 1HVEA 1ALAA 1AXNA 2ZHJA 2HYVA 1SAVA 2IE7A 4MDVA 4MDUA 1HVDA 1N44A 1DM5A 1W3WA 3BRXA 1AIIA 1ANWA 1W45A 2XO2A 4HREA 1YJ0A 2H0LA
chains in the Genus database with same CATH superfamily

2ZOCA 1A8AA 1R8ME 1YGMA 3L8NA 4EVFA 4C7PA 1BC9A 2ZHIA 2IE6A 1HVGA 2R0DA 1BCYA 1XSZA 1AVCA 1MCXA 4Z21A 1YCNA 2XO2A 2Q4CA 3AJCA 1R4AE 4JXHA 1HVEA 1ALAA 1AXNA 1SAVA 4Q2SA 1N44A 1RE0B 1W3WA 1AIIA 2R09A 3USWA 4HREA 1KU1A 4L5MA 1M9IA 1ANNA 1YIIA 3ANYA 1G5NA 2II2A 2VXGA 1ANXA 4FHRB 2HYWA 4KN7X 3ABQA 1S9DE 3SOHB 1DK5A 1AEIA 1AOWA 1W7BA 4D7QA 1N00A 1BC0A 1A8BA 1BO9A 2H0KA 4OIYA 2QEZA 4MDUA 1HVDA 1DM5A 3BRXA 1W45A 3TW5A 4KN4X 2IE7A 2H0LA 3ABRA 1Q8DA 1XJLA 4JWLA 4JK1X 4JMOA 4FQ0C 1BC1A 2H0MA 1C1KA 1BCWA 1BCZA 3ABOA 1HAKA 1LKVX 3LTLA 4C0AA 1N42A 1I4AA 1HVFA 1AVRA 3ABSA 2XO3A 2K6XA 4MDVA 4A4PA 1PBVA 1YJ0A 4KMUX 1BC3A 3USYA 1XT0B 4D7RA 4JMIA 3SWVA 2OY9A 3HJLA 2RANA 1N41A 4X9PA 3AO0A 2IICA 1AVHA 2HYUA 1UPTB 1HM6A 1R8SE 4EVHA 1QC7A 2ZHJA 2HYVA 1R8QE 1ANWA 2HSNA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 2ZOC A;  1XJL A;  1A8A A;  1M9I A;  1BC3 A;  1ANN A;  1YII A;  1BC1 A;  4EVF A;  1G5N A;  2II2 A;  2H0M A;  2ZHI A;  1ANX A;  2IE6 A;  1BCW A;  2HYW A;  1BCZ A;  1HVG A;  1HAK A;  1BCY A;  2RAN A;  1AVC A;  1MCX A;  1DK5 A;  1AEI A;  1N41 A;  1N42 A;  4X9P A;  1I4A A;  2IIC A;  1AOW A;  1AVH A;  1W7B A;  1YCN A;  1HM6 A;  2HYU A;  1HVF A;  1N00 A;  1BC0 A;  2Q4C A;  4EVH A;  1A8B A;  1BO9 A;  1AVR A;  2H0K A;  2XO3 A;  1HVE A;  1ALA A;  1AXN A;  2ZHJ A;  2HYV A;  1SAV A;  2IE7 A;  4MDV A;  4MDU A;  1HVD A;  1N44 A;  1DM5 A;  1W3W A;  3BRX A;  1AII A;  1ANW A;  1W45 A;  2XO2 A;  4HRE A;  1YJ0 A;  2H0L A; 
#chains in the Genus database with same CATH topology
 2ZOC A;  1A8A A;  1R8M E;  1YGM A;  3L8N A;  4EVF A;  4C7P A;  1BC9 A;  2ZHI A;  2IE6 A;  1HVG A;  2R0D A;  1BCY A;  1XSZ A;  1AVC A;  1MCX A;  4Z21 A;  1YCN A;  2XO2 A;  2Q4C A;  3AJC A;  1R4A E;  4JXH A;  1HVE A;  1ALA A;  1AXN A;  1SAV A;  4Q2S A;  1N44 A;  1RE0 B;  1W3W A;  1AII A;  2R09 A;  3USW A;  4HRE A;  1KU1 A;  4L5M A;  1M9I A;  1ANN A;  1YII A;  3ANY A;  1G5N A;  2II2 A;  2VXG A;  1ANX A;  4FHR B;  2HYW A;  4KN7 X;  3ABQ A;  1S9D E;  3SOH B;  1DK5 A;  1AEI A;  1AOW A;  1W7B A;  4D7Q A;  1N00 A;  1BC0 A;  1A8B A;  1BO9 A;  2H0K A;  4OIY A;  2QEZ A;  4MDU A;  1HVD A;  1DM5 A;  3BRX A;  1W45 A;  3TW5 A;  4KN4 X;  2IE7 A;  2H0L A;  3ABR A;  1Q8D A;  1XJL A;  4JWL A;  4JK1 X;  4JMO A;  4FQ0 C;  1BC1 A;  2H0M A;  1C1K A;  1BCW A;  1BCZ A;  3ABO A;  1HAK A;  1LKV X;  3LTL A;  4C0A A;  1N42 A;  1I4A A;  1HVF A;  1AVR A;  3ABS A;  2XO3 A;  2K6X A;  4MDV A;  4A4P A;  1PBV A;  1YJ0 A;  4KMU X;  1BC3 A;  3USY A;  1XT0 B;  4D7R A;  4JMI A;  3SWV A;  2OY9 A;  3HJL A;  2RAN A;  1N41 A;  4X9P A;  3AO0 A;  2IIC A;  1AVH A;  2HYU A;  1UPT B;  1HM6 A;  1R8S E;  4EVH A;  1QC7 A;  2ZHJ A;  2HYV A;  1R8Q E;  1ANW A;  2HSN A; 
#chains in the Genus database with same CATH homology
 2ZOC A;  1XJL A;  1A8A A;  1M9I A;  1BC3 A;  1ANN A;  1YII A;  1BC1 A;  4EVF A;  1G5N A;  2II2 A;  2H0M A;  2ZHI A;  1ANX A;  2IE6 A;  1BCW A;  2HYW A;  1BCZ A;  1HVG A;  1HAK A;  1BCY A;  2RAN A;  1AVC A;  1MCX A;  1DK5 A;  1AEI A;  1N41 A;  1N42 A;  4X9P A;  1I4A A;  2IIC A;  1AOW A;  1AVH A;  1W7B A;  1YCN A;  1HM6 A;  2HYU A;  1HVF A;  1N00 A;  1BC0 A;  2Q4C A;  4EVH A;  1A8B A;  1BO9 A;  1AVR A;  2H0K A;  2XO3 A;  1HVE A;  1ALA A;  1AXN A;  2ZHJ A;  2HYV A;  1SAV A;  2IE7 A;  4MDV A;  4MDU A;  1HVD A;  1N44 A;  1DM5 A;  1W3W A;  3BRX A;  1AII A;  1ANW A;  1W45 A;  2XO2 A;  4HRE A;  1YJ0 A;  2H0L A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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1BC0A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations