1BC9 | Genus

Total Genus 44

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	44
sequence length	200
structure length	200
Chain Sequence	MKNMQRNKQVAMGRKKFNMDPKKGIQFLIENDLLKNTCEDIAQFLYKGEGLNKTAIGDYLGERDEFNIQVLHAFVELHEFTDLNLVQALRQFLWSFRLPGEAQKIDRMMEAFAQRYCQCNNGVFQSTDTCYVLSFAIIMLNTSLHNPNVKDKPTVERFIAMNRGINDGGDLPEELLRNLYESIKNEPFKIPELEHHHHHH

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 200 atoms

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200 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Exchange factor
source organism	Homo sapiens
publication title	Solution structure of the cytohesin-1 (B2-1) Sec7 domain and its interaction with the GTPase ADP ribosylation factor 1. pubmed doi rcsb
molecule keywords	CYTOHESIN-1
total genus	44
structure length	200
sequence length	200
ec nomenclature
pdb deposition date	1998-05-06

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF01369	Sec7	Sec7 domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.10.220.20	Mainly Alpha	Orthogonal Bundle	Annexin V; domain 1	Annexin V; domain 1	1bc9A01
1.10.1000.11	Mainly Alpha	Orthogonal Bundle	Arf Nucleotide-binding Site Opener; domain 2	Arf Nucleotide-binding Site Opener,domain 2	1bc9A02

1PBVA 4D7RA 4JMIA 1S9DE 1BC9A 1XT0B 1R8SE 4JMOA 4JWLA 4A4PA 4L5MA 3LTLA 4OIYA 4C0AA 4Z21A 3L8NA 2R09A 4D7QA 1KU1A 1R8ME 1R8QE 4JXHA 1XSZA 3SWVA 4C7PA 1RE0B 2R0DA
chains in the Genus database with same CATH superfamily

1MCXA 1QC7A 2H0LA 1ANXA 1HVEA 3ABQA 1ALAA 1G5NA 3BRXA 1R8SE 4X9PA 1BO9A 1YJ0A 4L5MA 4OIYA 1XJLA 4MDUA 4C0AA 2H0KA 1DK5A 4Z21A 1W3WA 3USYA 1W45A 2XO3A 1N41A 3SOHB 3AJCA 1BCYA 1HVDA 4JK1X 1HVFA 1A8BA 1AVHA 4HREA 1AIIA 1BC0A 4JMOA 4JWLA 1AVCA 2QEZA 1M9IA 2RANA 1HM6A 4FQ0C 4Q2SA 1ANWA 2IICA 1DM5A 4MDVA 4EVHA 2ZHJA 2IE7A 4EVFA 1ANNA 1R8QE 4JXHA 1XSZA 4KN7X 2ZOCA 4FHRB 1PBVA 4C7PA 4D7RA 1R4AE 2XO2A 2HYVA 1BC9A 1HVGA 1XT0B 1UPTB 2HYWA 1YCNA 2IE6A 4KMUX 1N00A 4A4PA 1BC1A 2HYUA 1N44A 3L8NA 1I4AA 1YGMA 4D7QA 2H0MA 1N42A 1Q8DA 1AXNA 2OY9A 4KN4X 2R0DA 1AOWA 1BCZA 4JMIA 3ABOA 1S9DE 3AO0A 1A8AA 1C1KA 2Q4CA 1BCWA 1BC3A 2VXGA 1AEIA 3TW5A 3LTLA 1LKVX 1YIIA 2II2A 1AVRA 2R09A 1KU1A 2ZHIA 3ABRA 1R8ME 1W7BA 3ANYA 2K6XA 3SWVA 1HAKA 1SAVA 3ABSA 3HJLA 1RE0B 3USWA 2HSNA
chains in the Genus database with same CATH topology

4JK1X 1QC7A 1PBVA 4D7RA 4JMIA 1S9DE 1BC9A 1XT0B 1R8SE 4JMOA 4JWLA 3TW5A 4KMUX 4A4PA 4L5MA 3LTLA 4OIYA 4C0AA 1LKVX 4Z21A 4FQ0C 3USYA 3SOHB 3L8NA 2R09A 4D7QA 1KU1A 1R8ME 1R8QE 4JXHA 1XSZA 2K6XA 1Q8DA 3SWVA 3HJLA 4C7PA 1RE0B 4KN7X 3USWA 4KN4X 4FHRB 3AJCA 2HSNA 2R0DA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 1PBV A;  4D7R A;  4JMI A;  1S9D E;  1BC9 A;  1XT0 B;  1R8S E;  4JMO A;  4JWL A;  4A4P A;  4L5M A;  3LTL A;  4OIY A;  4C0A A;  4Z21 A;  3L8N A;  2R09 A;  4D7Q A;  1KU1 A;  1R8M E;  1R8Q E;  4JXH A;  1XSZ A;  3SWV A;  4C7P A;  1RE0 B;  2R0D A; 
#chains in the Genus database with same CATH topology
 1MCX A;  1QC7 A;  2H0L A;  1ANX A;  1HVE A;  3ABQ A;  1ALA A;  1G5N A;  3BRX A;  1R8S E;  4X9P A;  1BO9 A;  1YJ0 A;  4L5M A;  4OIY A;  1XJL A;  4MDU A;  4C0A A;  2H0K A;  1DK5 A;  4Z21 A;  1W3W A;  3USY A;  1W45 A;  2XO3 A;  1N41 A;  3SOH B;  3AJC A;  1BCY A;  1HVD A;  4JK1 X;  1HVF A;  1A8B A;  1AVH A;  4HRE A;  1AII A;  1BC0 A;  4JMO A;  4JWL A;  1AVC A;  2QEZ A;  1M9I A;  2RAN A;  1HM6 A;  4FQ0 C;  4Q2S A;  1ANW A;  2IIC A;  1DM5 A;  4MDV A;  4EVH A;  2ZHJ A;  2IE7 A;  4EVF A;  1ANN A;  1R8Q E;  4JXH A;  1XSZ A;  4KN7 X;  2ZOC A;  4FHR B;  1PBV A;  4C7P A;  4D7R A;  1R4A E;  2XO2 A;  2HYV A;  1BC9 A;  1HVG A;  1XT0 B;  1UPT B;  2HYW A;  1YCN A;  2IE6 A;  4KMU X;  1N00 A;  4A4P A;  1BC1 A;  2HYU A;  1N44 A;  3L8N A;  1I4A A;  1YGM A;  4D7Q A;  2H0M A;  1N42 A;  1Q8D A;  1AXN A;  2OY9 A;  4KN4 X;  2R0D A;  1AOW A;  1BCZ A;  4JMI A;  3ABO A;  1S9D E;  3AO0 A;  1A8A A;  1C1K A;  2Q4C A;  1BCW A;  1BC3 A;  2VXG A;  1AEI A;  3TW5 A;  3LTL A;  1LKV X;  1YII A;  2II2 A;  1AVR A;  2R09 A;  1KU1 A;  2ZHI A;  3ABR A;  1R8M E;  1W7B A;  3ANY A;  2K6X A;  3SWV A;  1HAK A;  1SAV A;  3ABS A;  3HJL A;  1RE0 B;  3USW A;  2HSN A; 
#chains in the Genus database with same CATH homology
 4JK1 X;  1QC7 A;  1PBV A;  4D7R A;  4JMI A;  1S9D E;  1BC9 A;  1XT0 B;  1R8S E;  4JMO A;  4JWL A;  3TW5 A;  4KMU X;  4A4P A;  4L5M A;  3LTL A;  4OIY A;  4C0A A;  1LKV X;  4Z21 A;  4FQ0 C;  3USY A;  3SOH B;  3L8N A;  2R09 A;  4D7Q A;  1KU1 A;  1R8M E;  1R8Q E;  4JXH A;  1XSZ A;  2K6X A;  1Q8D A;  3SWV A;  3HJL A;  4C7P A;  1RE0 B;  4KN7 X;  3USW A;  4KN4 X;  4FHR B;  3AJC A;  2HSN A;  2R0D A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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1BC9A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations