1BG0A

Transition state structure of arginine kinase
Total Genus 125
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
125
sequence length
356
structure length
356
Chain Sequence
VDQATLDKLEAGFKKLQEASDCKSLLKKHLTKDVFDSIKNKKTGMGATLLDVIQSGVENLDSGVGIYAPDAESYRTFGPLFDPIIDDYHGGFKLTDKHPPKQWGDINTLVGLDPAGQFIISTRVRCGRSLQGYPFNPCLTAEQYKEMEEKVSSTLSSMEDELKGTYYPLTGMSKATQQQLIDDHFLFKEGDRFLQTANACRYWPTGRGIFHNDAKTFLVWVNEEDHLRIISMQKGGDLKTVYKRLVTAVDNIESKLPFSHDDRFGFLTFCPTNLGTTMRASVHIQLPKLAKDRKVLEDIASKFNLQVRGTRGEHTESEGGVYDISNKRRLGLTEYQAVREMQDGILEMIKMEKAAA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Transition state structure of arginine kinase: implications for catalysis of bimolecular reactions.
pubmed doi rcsb
source organism Limulus polyphemus
molecule tags Kinase
molecule keywords ARGININE KINASE
total genus 125
structure length 356
sequence length 356
ec nomenclature ec 2.7.3.3: Arginine kinase.
pdb deposition date 1998-06-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00217 ATP-gua_Ptrans ATP:guanido phosphotransferase, C-terminal catalytic domain
A PF02807 ATP-gua_PtransN ATP:guanido phosphotransferase, N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.135.10 Mainly Alpha Orthogonal Bundle Transferase Creatine Kinase; Chain A, domain 1 ATP:guanido phosphotransferase, N-terminal domain 1bg0A01
3.30.590.10 Alpha Beta 2-Layer Sandwich Creatine Kinase; Chain A, domain 2 Glutamine synthetase/guanido kinase, catalytic domain 1bg0A02
4RF8A 1LGRA 2GLSA 5J9AA 3JQ3A 4LNKA 1SD0A 3ZXRA 3L2EB 1U6RA 4BG4A 1CRKA 3JPZA 4RF6A 4GW2A 4Q2RA 3M10A 4BG4B 2WGSA 4BHLA 2CRKA 1RL9A 3ZXVA 4GW0A 1F1HA 3DREA 4GVYA 1FPYA 4ACFA 4AM1A 4S0RA 4S17A 1I0EA 4RF9A 5J99A 1HTQA 2WHIA 3DRBA 4RF7A 3JU6A 3B6RA 1P52A 2J1QA 1G0WA 1F52A 3L2EA 4LNOA 1QK1A 4XYCA 1VRPA 4LNIA 4GVZA 1QH4A 3NG0A 4LNFA 4LNNA 2LGSA 1BG0A 1HTOA 1P50A 4HPPA 1M15A 2BVCA 4Z9MA 3JU5A 3L2DA
chains in the Genus database with same CATH superfamily
4RF8A 1LGRA 3JQ3A 2D32A 4LNKA 1SD0A 2QC8A 3LN6A 2GWCA 2WGSA 4BHLA 2CRKA 1V4GA 4GW0A 4S0RA 1I0EA 5J99A 1HTQA 1F52A 2J1QA 3IG8A 3L2EA 3LN7A 2D3CA 2GWDA 3ZXRA 1U6RA 3M10A 1TT4A 1VA6A 3ZXVA 4ACFA 3DRBA 4RF7A 3JU6A 4LNOA 2D3AA 4GVZA 1QH4A 3NG0A 2D33A 2GLSA 3NZTA 3L2EB 4BAXA 3JPZA 4GW2A 1RL9A 3DREA 1R8GA 1FPYA 2UU7A 4AM1A 2OJWA 4RF9A 3B6RA 3LVWA 4XYCA 1VRPA 4LNIA 4LNFA 2LGSA 1BG0A 4HPPA 1P50A 3FKYA 2BVCA 4S17A 3JU5A 3L2DA 5J9AA 2D3BA 4BG4A 1CRKA 4RF6A 4Q2RA 4BG4B 1F1HA 3IG5A 4GVYA 2WHIA 1P52A 1G0WA 3LVVA 1QK1A 4LNNA 1HTOA 1M15A 4Z9MA
chains in the Genus database with same CATH topology
4RF8A 1LGRA 2GLSA 5J9AA 3JQ3A 4LNKA 1SD0A 3ZXRA 3L2EB 1U6RA 4BG4A 1CRKA 3JPZA 4RF6A 4GW2A 4Q2RA 3M10A 4BG4B 2WGSA 4BHLA 2CRKA 1RL9A 3ZXVA 4GW0A 1F1HA 3DREA 4GVYA 1FPYA 4ACFA 4AM1A 4S0RA 4S17A 1I0EA 4RF9A 5J99A 1HTQA 2WHIA 3DRBA 4RF7A 3JU6A 3B6RA 1P52A 2J1QA 1G0WA 1F52A 3L2EA 4LNOA 1QK1A 4XYCA 1VRPA 4LNIA 4GVZA 1QH4A 3NG0A 4LNFA 4LNNA 2LGSA 1BG0A 1HTOA 1P50A 4HPPA 1M15A 2BVCA 4Z9MA 3JU5A 3L2DA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4RF8 A;  1LGR A;  2GLS A;  5J9A A;  3JQ3 A;  4LNK A;  1SD0 A;  3ZXR A;  3L2E B;  1U6R A;  4BG4 A;  1CRK A;  3JPZ A;  4RF6 A;  4GW2 A;  4Q2R A;  3M10 A;  4BG4 B;  2WGS A;  4BHL A;  2CRK A;  1RL9 A;  3ZXV A;  4GW0 A;  1F1H A;  3DRE A;  4GVY A;  1FPY A;  4ACF A;  4AM1 A;  4S0R A;  4S17 A;  1I0E A;  4RF9 A;  5J99 A;  1HTQ A;  2WHI A;  3DRB A;  4RF7 A;  3JU6 A;  3B6R A;  1P52 A;  2J1Q A;  1G0W A;  1F52 A;  3L2E A;  4LNO A;  1QK1 A;  4XYC A;  1VRP A;  4LNI A;  4GVZ A;  1QH4 A;  3NG0 A;  4LNF A;  4LNN A;  2LGS A;  1BG0 A;  1HTO A;  1P50 A;  4HPP A;  1M15 A;  2BVC A;  4Z9M A;  3JU5 A;  3L2D A; 
#chains in the Genus database with same CATH topology
 4RF8 A;  1LGR A;  3JQ3 A;  2D32 A;  4LNK A;  1SD0 A;  2QC8 A;  3LN6 A;  2GWC A;  2WGS A;  4BHL A;  2CRK A;  1V4G A;  4GW0 A;  4S0R A;  1I0E A;  5J99 A;  1HTQ A;  1F52 A;  2J1Q A;  3IG8 A;  3L2E A;  3LN7 A;  2D3C A;  2GWD A;  3ZXR A;  1U6R A;  3M10 A;  1TT4 A;  1VA6 A;  3ZXV A;  4ACF A;  3DRB A;  4RF7 A;  3JU6 A;  4LNO A;  2D3A A;  4GVZ A;  1QH4 A;  3NG0 A;  2D33 A;  2GLS A;  3NZT A;  3L2E B;  4BAX A;  3JPZ A;  4GW2 A;  1RL9 A;  3DRE A;  1R8G A;  1FPY A;  2UU7 A;  4AM1 A;  2OJW A;  4RF9 A;  3B6R A;  3LVW A;  4XYC A;  1VRP A;  4LNI A;  4LNF A;  2LGS A;  1BG0 A;  4HPP A;  1P50 A;  3FKY A;  2BVC A;  4S17 A;  3JU5 A;  3L2D A;  5J9A A;  2D3B A;  4BG4 A;  1CRK A;  4RF6 A;  4Q2R A;  4BG4 B;  1F1H A;  3IG5 A;  4GVY A;  2WHI A;  1P52 A;  1G0W A;  3LVV A;  1QK1 A;  4LNN A;  1HTO A;  1M15 A;  4Z9M A; 
#chains in the Genus database with same CATH homology
 4RF8 A;  1LGR A;  2GLS A;  5J9A A;  3JQ3 A;  4LNK A;  1SD0 A;  3ZXR A;  3L2E B;  1U6R A;  4BG4 A;  1CRK A;  3JPZ A;  4RF6 A;  4GW2 A;  4Q2R A;  3M10 A;  4BG4 B;  2WGS A;  4BHL A;  2CRK A;  1RL9 A;  3ZXV A;  4GW0 A;  1F1H A;  3DRE A;  4GVY A;  1FPY A;  4ACF A;  4AM1 A;  4S0R A;  4S17 A;  1I0E A;  4RF9 A;  5J99 A;  1HTQ A;  2WHI A;  3DRB A;  4RF7 A;  3JU6 A;  3B6R A;  1P52 A;  2J1Q A;  1G0W A;  1F52 A;  3L2E A;  4LNO A;  1QK1 A;  4XYC A;  1VRP A;  4LNI A;  4GVZ A;  1QH4 A;  3NG0 A;  4LNF A;  4LNN A;  2LGS A;  1BG0 A;  1HTO A;  1P50 A;  4HPP A;  1M15 A;  2BVC A;  4Z9M A;  3JU5 A;  3L2D A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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