3JQ3A

Crystal structure of lombricine kinase, complexed with substrate adp
Total Genus 130
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
130
sequence length
364
structure length
364
Chain Sequence
b'FQNDAKANFPDYANHGCVVGRHLNFEMYQRLFGKKTAHGVTVDKVIQPSVDNFGNCIGLIAGDEESYEVFKELFDAVINEKHKGFGPNDSQPAPDLDASKLVGGQFDEKYVKSCRIRTGRGIRGLCYPPSCTRGERREVERVITTALAGLSGDLSGTYYPLSKMTPEQENQLIADHFLFQKPTGHLMVNSASVRDWPDARGIWHNNEKTFLIWINEEDHMRVISMQKGGNVKAVFERFGRGLNAIAEQMKKNGREYMWNQRLGYLCACPSNLGTGLRASVHVQLHQLSKHPKFEDIVVALQLQKRGTGGEHTAAVDDVYDISNAARLKKSEREFVQLLIDGVKKLIDMEQALEAGKSIDDLIPA'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Lombricine kinase
publication title The structure of lombricine kinase: implications for phosphagen kinase conformational changes.
pubmed doi rcsb
source organism Urechis caupo
molecule tags Transferase
total genus 130
structure length 364
sequence length 364
ec nomenclature ec 2.7.3.5: Lombricine kinase.
pdb deposition date 2009-09-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00217 ATP-gua_Ptrans ATP:guanido phosphotransferase, C-terminal catalytic domain
A PF02807 ATP-gua_PtransN ATP:guanido phosphotransferase, N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.135.10 Mainly Alpha Orthogonal Bundle Transferase Creatine Kinase; Chain A, domain 1 ATP:guanido phosphotransferase, N-terminal domain 3jq3A01
3.30.590.10 Alpha Beta 2-Layer Sandwich Creatine Kinase; Chain A, domain 2 Glutamine synthetase/guanido kinase, catalytic domain 3jq3A02
4LNKA 3L2EB 3DRBA 1M15A 4BHLA 1G0WA 1I0EA 1RL9A 1HTQA 3JQ3A 4Q2RA 2CRKA 4RF9A 4GW2A 4BG4B 4LNNA 4ACFA 2GLSA 3NG0A 5J99A 1VRPA 1P50A 4RF8A 3L2DA 5J9AA 4XYCA 4RF7A 3B6RA 4GVZA 4RF6A 4S0RA 2WGSA 3DREA 4LNOA 4GVYA 4GW0A 4S17A 3JU5A 1CRKA 1U6RA 4Z9MA 3M10A 1F1HA 1SD0A 1BG0A 4AM1A 2WHIA 4HPPA 3ZXRA 4BG4A 1F52A 1LGRA 2BVCA 1QK1A 3ZXVA 3L2EA 4LNIA 1HTOA 3JPZA 1QH4A 2LGSA 4LNFA 3JU6A 1P52A 1FPYA 2J1QA
chains in the Genus database with same CATH superfamily
1M15A 2CRKA 4RF9A 2UU7A 4ACFA 4XYCA 4RF6A 3FKYA 4S17A 3JU5A 1CRKA 4Z9MA 1F52A 3L2EA 1HTOA 4BG4B 1P52A 4LNNA 1TT4A 1V4GA 4BHLA 1I0EA 3LVVA 2D3CA 2D33A 3B6RA 3IG5A 2OJWA 3M10A 2WHIA 3ZXRA 4BAXA 3ZXVA 2BVCA 1QK1A 3LN6A 1QH4A 2LGSA 4LNFA 3IG8A 2J1QA 3L2EB 3DRBA 1RL9A 3JQ3A 1VA6A 1R8GA 2GLSA 3NG0A 5J99A 1VRPA 1P50A 3L2DA 4RF7A 4GVZA 4S0RA 2WGSA 2D32A 3DREA 4LNOA 2QC8A 2GWCA 1U6RA 1BG0A 2D3AA 4HPPA 2GWDA 4LNIA 3JPZA 3NZTA 3JU6A 1FPYA 4LNKA 3LN7A 1G0WA 1HTQA 4Q2RA 4GW2A 4RF8A 5J9AA 4GVYA 4GW0A 1F1HA 1SD0A 4AM1A 4BG4A 1LGRA 3LVWA 2D3BA
chains in the Genus database with same CATH topology
4LNKA 3L2EB 3DRBA 1M15A 4BHLA 1G0WA 1I0EA 1RL9A 1HTQA 3JQ3A 4Q2RA 2CRKA 4RF9A 4GW2A 4BG4B 4LNNA 4ACFA 2GLSA 3NG0A 5J99A 1VRPA 1P50A 4RF8A 3L2DA 5J9AA 4XYCA 4RF7A 3B6RA 4GVZA 4RF6A 4S0RA 2WGSA 3DREA 4LNOA 4GVYA 4GW0A 4S17A 3JU5A 1CRKA 1U6RA 4Z9MA 3M10A 1F1HA 1SD0A 1BG0A 4AM1A 2WHIA 4HPPA 3ZXRA 4BG4A 1F52A 1LGRA 2BVCA 1QK1A 3ZXVA 3L2EA 4LNIA 1HTOA 3JPZA 1QH4A 2LGSA 4LNFA 3JU6A 1P52A 1FPYA 2J1QA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4LNK A;  3L2E B;  3DRB A;  1M15 A;  4BHL A;  1G0W A;  1I0E A;  1RL9 A;  1HTQ A;  3JQ3 A;  4Q2R A;  2CRK A;  4RF9 A;  4GW2 A;  4BG4 B;  4LNN A;  4ACF A;  2GLS A;  3NG0 A;  5J99 A;  1VRP A;  1P50 A;  4RF8 A;  3L2D A;  5J9A A;  4XYC A;  4RF7 A;  3B6R A;  4GVZ A;  4RF6 A;  4S0R A;  2WGS A;  3DRE A;  4LNO A;  4GVY A;  4GW0 A;  4S17 A;  3JU5 A;  1CRK A;  1U6R A;  4Z9M A;  3M10 A;  1F1H A;  1SD0 A;  1BG0 A;  4AM1 A;  2WHI A;  4HPP A;  3ZXR A;  4BG4 A;  1F52 A;  1LGR A;  2BVC A;  1QK1 A;  3ZXV A;  3L2E A;  4LNI A;  1HTO A;  3JPZ A;  1QH4 A;  2LGS A;  4LNF A;  3JU6 A;  1P52 A;  1FPY A;  2J1Q A; 
#chains in the Genus database with same CATH topology
 1M15 A;  2CRK A;  4RF9 A;  2UU7 A;  4ACF A;  4XYC A;  4RF6 A;  3FKY A;  4S17 A;  3JU5 A;  1CRK A;  4Z9M A;  1F52 A;  3L2E A;  1HTO A;  4BG4 B;  1P52 A;  4LNN A;  1TT4 A;  1V4G A;  4BHL A;  1I0E A;  3LVV A;  2D3C A;  2D33 A;  3B6R A;  3IG5 A;  2OJW A;  3M10 A;  2WHI A;  3ZXR A;  4BAX A;  3ZXV A;  2BVC A;  1QK1 A;  3LN6 A;  1QH4 A;  2LGS A;  4LNF A;  3IG8 A;  2J1Q A;  3L2E B;  3DRB A;  1RL9 A;  3JQ3 A;  1VA6 A;  1R8G A;  2GLS A;  3NG0 A;  5J99 A;  1VRP A;  1P50 A;  3L2D A;  4RF7 A;  4GVZ A;  4S0R A;  2WGS A;  2D32 A;  3DRE A;  4LNO A;  2QC8 A;  2GWC A;  1U6R A;  1BG0 A;  2D3A A;  4HPP A;  2GWD A;  4LNI A;  3JPZ A;  3NZT A;  3JU6 A;  1FPY A;  4LNK A;  3LN7 A;  1G0W A;  1HTQ A;  4Q2R A;  4GW2 A;  4RF8 A;  5J9A A;  4GVY A;  4GW0 A;  1F1H A;  1SD0 A;  4AM1 A;  4BG4 A;  1LGR A;  3LVW A;  2D3B A; 
#chains in the Genus database with same CATH homology
 4LNK A;  3L2E B;  3DRB A;  1M15 A;  4BHL A;  1G0W A;  1I0E A;  1RL9 A;  1HTQ A;  3JQ3 A;  4Q2R A;  2CRK A;  4RF9 A;  4GW2 A;  4BG4 B;  4LNN A;  4ACF A;  2GLS A;  3NG0 A;  5J99 A;  1VRP A;  1P50 A;  4RF8 A;  3L2D A;  5J9A A;  4XYC A;  4RF7 A;  3B6R A;  4GVZ A;  4RF6 A;  4S0R A;  2WGS A;  3DRE A;  4LNO A;  4GVY A;  4GW0 A;  4S17 A;  3JU5 A;  1CRK A;  1U6R A;  4Z9M A;  3M10 A;  1F1H A;  1SD0 A;  1BG0 A;  4AM1 A;  2WHI A;  4HPP A;  3ZXR A;  4BG4 A;  1F52 A;  1LGR A;  2BVC A;  1QK1 A;  3ZXV A;  3L2E A;  4LNI A;  1HTO A;  3JPZ A;  1QH4 A;  2LGS A;  4LNF A;  3JU6 A;  1P52 A;  1FPY A;  2J1Q A; 
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similar chains in the Genus database (?% sequence similarity)
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