3JQ3A

Crystal structure of lombricine kinase, complexed with substrate adp
Total Genus 130
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
130
sequence length
364
structure length
364
Chain Sequence
FQNDAKANFPDYANHGCVVGRHLNFEMYQRLFGKKTAHGVTVDKVIQPSVDNFGNCIGLIAGDEESYEVFKELFDAVINEKHKGFGPNDSQPAPDLDASKLVGGQFDEKYVKSCRIRTGRGIRGLCYPPSCTRGERREVERVITTALAGLSGDLSGTYYPLSKMTPEQENQLIADHFLFQKPTGHLMVNSASVRDWPDARGIWHNNEKTFLIWINEEDHMRVISMQKGGNVKAVFERFGRGLNAIAEQMKKNGREYMWNQRLGYLCACPSNLGTGLRASVHVQLHQLSKHPKFEDIVVALQLQKRGTGGEHTAAVDDVYDISNAARLKKSEREFVQLLIDGVKKLIDMEQALEAGKSIDDLIPA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title The structure of lombricine kinase: implications for phosphagen kinase conformational changes.
pubmed doi rcsb
source organism Urechis caupo
molecule tags Transferase
molecule keywords Lombricine kinase
total genus 130
structure length 364
sequence length 364
ec nomenclature ec 2.7.3.5: Lombricine kinase.
pdb deposition date 2009-09-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00217 ATP-gua_Ptrans ATP:guanido phosphotransferase, C-terminal catalytic domain
A PF02807 ATP-gua_PtransN ATP:guanido phosphotransferase, N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.135.10 Mainly Alpha Orthogonal Bundle Transferase Creatine Kinase; Chain A, domain 1 ATP:guanido phosphotransferase, N-terminal domain 3jq3A01
3.30.590.10 Alpha Beta 2-Layer Sandwich Creatine Kinase; Chain A, domain 2 Glutamine synthetase/guanido kinase, catalytic domain 3jq3A02
3JQ3A 3M10A 4Q2RA 4BG4A 5J99A 1VRPA 1RL9A 2WHIA 1P52A 3JPZA 3ZXVA 1QH4A 3L2DA 3ZXRA 4LNFA 2CRKA 4RF8A 2GLSA 1SD0A 4LNKA 2LGSA 4AM1A 1F52A 2BVCA 3JU6A 1M15A 1G0WA 4LNIA 1HTOA 3JU5A 1U6RA 1BG0A 4S17A 4HPPA 4S0RA 4Z9MA 5J9AA 4GW2A 4RF9A 1I0EA 1P50A 4GVYA 4RF6A 4GW0A 1FPYA 1LGRA 3L2EB 4GVZA 2WGSA 3DRBA 1CRKA 4BG4B 1F1HA 4XYCA 2J1QA 3B6RA 4RF7A 1HTQA 1QK1A 4ACFA 4BHLA 3L2EA 4LNOA 4LNNA 3NG0A 3DREA
chains in the Genus database with same CATH superfamily
1P52A 3L2EA 1QH4A 2QC8A 1SD0A 3JU6A 4S17A 4GW2A 2D32A 4RF9A 4GW0A 1FPYA 3L2EB 2D3CA 4ACFA 4BHLA 1TT4A 4LNOA 3IG8A 5J99A 1VA6A 3JPZA 2GWDA 4LNFA 2LGSA 1G0WA 3JU5A 3FKYA 1BG0A 2OJWA 4HPPA 1I0EA 4RF6A 3LN6A 1LGRA 2WGSA 4GVZA 1CRKA 4BG4B 4XYCA 2D3BA 4RF7A 3DREA 3LVWA 3M10A 4Q2RA 4BG4A 1VRPA 2WHIA 3L2DA 3ZXRA 2CRKA 2GLSA 4AM1A 2BVCA 1M15A 2GWCA 4Z9MA 2D3AA 2UU7A 4BAXA 3B6RA 1HTQA 3LN7A 4LNNA 2J1QA 3JQ3A 1RL9A 3ZXVA 4RF8A 4LNKA 1F52A 4LNIA 1HTOA 3IG5A 1U6RA 4S0RA 5J9AA 1P50A 4GVYA 3DRBA 1V4GA 1F1HA 1QK1A 3LVVA 3NZTA 2D33A 1R8GA 3NG0A
chains in the Genus database with same CATH topology
3JQ3A 3M10A 4Q2RA 4BG4A 5J99A 1VRPA 1RL9A 2WHIA 1P52A 3JPZA 3ZXVA 1QH4A 3L2DA 3ZXRA 4LNFA 2CRKA 4RF8A 2GLSA 1SD0A 4LNKA 2LGSA 4AM1A 1F52A 2BVCA 3JU6A 1M15A 1G0WA 4LNIA 1HTOA 3JU5A 1U6RA 1BG0A 4S17A 4HPPA 4S0RA 4Z9MA 5J9AA 4GW2A 4RF9A 1I0EA 1P50A 4GVYA 4RF6A 4GW0A 1FPYA 1LGRA 3L2EB 4GVZA 2WGSA 3DRBA 1CRKA 4BG4B 1F1HA 4XYCA 2J1QA 3B6RA 4RF7A 1HTQA 1QK1A 4ACFA 4BHLA 3L2EA 4LNOA 4LNNA 3NG0A 3DREA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3JQ3 A;  3M10 A;  4Q2R A;  4BG4 A;  5J99 A;  1VRP A;  1RL9 A;  2WHI A;  1P52 A;  3JPZ A;  3ZXV A;  1QH4 A;  3L2D A;  3ZXR A;  4LNF A;  2CRK A;  4RF8 A;  2GLS A;  1SD0 A;  4LNK A;  2LGS A;  4AM1 A;  1F52 A;  2BVC A;  3JU6 A;  1M15 A;  1G0W A;  4LNI A;  1HTO A;  3JU5 A;  1U6R A;  1BG0 A;  4S17 A;  4HPP A;  4S0R A;  4Z9M A;  5J9A A;  4GW2 A;  4RF9 A;  1I0E A;  1P50 A;  4GVY A;  4RF6 A;  4GW0 A;  1FPY A;  1LGR A;  3L2E B;  4GVZ A;  2WGS A;  3DRB A;  1CRK A;  4BG4 B;  1F1H A;  4XYC A;  2J1Q A;  3B6R A;  4RF7 A;  1HTQ A;  1QK1 A;  4ACF A;  4BHL A;  3L2E A;  4LNO A;  4LNN A;  3NG0 A;  3DRE A; 
#chains in the Genus database with same CATH topology
 1P52 A;  3L2E A;  1QH4 A;  2QC8 A;  1SD0 A;  3JU6 A;  4S17 A;  4GW2 A;  2D32 A;  4RF9 A;  4GW0 A;  1FPY A;  3L2E B;  2D3C A;  4ACF A;  4BHL A;  1TT4 A;  4LNO A;  3IG8 A;  5J99 A;  1VA6 A;  3JPZ A;  2GWD A;  4LNF A;  2LGS A;  1G0W A;  3JU5 A;  3FKY A;  1BG0 A;  2OJW A;  4HPP A;  1I0E A;  4RF6 A;  3LN6 A;  1LGR A;  2WGS A;  4GVZ A;  1CRK A;  4BG4 B;  4XYC A;  2D3B A;  4RF7 A;  3DRE A;  3LVW A;  3M10 A;  4Q2R A;  4BG4 A;  1VRP A;  2WHI A;  3L2D A;  3ZXR A;  2CRK A;  2GLS A;  4AM1 A;  2BVC A;  1M15 A;  2GWC A;  4Z9M A;  2D3A A;  2UU7 A;  4BAX A;  3B6R A;  1HTQ A;  3LN7 A;  4LNN A;  2J1Q A;  3JQ3 A;  1RL9 A;  3ZXV A;  4RF8 A;  4LNK A;  1F52 A;  4LNI A;  1HTO A;  3IG5 A;  1U6R A;  4S0R A;  5J9A A;  1P50 A;  4GVY A;  3DRB A;  1V4G A;  1F1H A;  1QK1 A;  3LVV A;  3NZT A;  2D33 A;  1R8G A;  3NG0 A; 
#chains in the Genus database with same CATH homology
 3JQ3 A;  3M10 A;  4Q2R A;  4BG4 A;  5J99 A;  1VRP A;  1RL9 A;  2WHI A;  1P52 A;  3JPZ A;  3ZXV A;  1QH4 A;  3L2D A;  3ZXR A;  4LNF A;  2CRK A;  4RF8 A;  2GLS A;  1SD0 A;  4LNK A;  2LGS A;  4AM1 A;  1F52 A;  2BVC A;  3JU6 A;  1M15 A;  1G0W A;  4LNI A;  1HTO A;  3JU5 A;  1U6R A;  1BG0 A;  4S17 A;  4HPP A;  4S0R A;  4Z9M A;  5J9A A;  4GW2 A;  4RF9 A;  1I0E A;  1P50 A;  4GVY A;  4RF6 A;  4GW0 A;  1FPY A;  1LGR A;  3L2E B;  4GVZ A;  2WGS A;  3DRB A;  1CRK A;  4BG4 B;  1F1H A;  4XYC A;  2J1Q A;  3B6R A;  4RF7 A;  1HTQ A;  1QK1 A;  4ACF A;  4BHL A;  3L2E A;  4LNO A;  4LNN A;  3NG0 A;  3DRE A; 
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similar chains in the Genus database (?% sequence similarity)
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