1SD0A

Structure of arginine kinase c271a mutant
Total Genus 125
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
125
sequence length
356
structure length
356
Chain Sequence
VDQATLDKLEAGFKKLQEASDCKSLLKKHLTKDVFDSIKNKKTGMGATLLDVIQSGVENLDSGVGIYAPDAESYRTFGPLFDPIIDDYHGGFKLTDKHPPKQWGDINTLVGLDPAGQFIISTRVRCGRSLQGYPFNPCLTAEQYKEMEEKVSSTLSSMEDELKGTYYPLTGMSKATQQQLIDDHFLFKEGDRFLQTANACRYWPTGRGIFHNDAKTFLVWVNEEDHLRIISMQKGGDLKTVYKRLVTAVDNIESKLPFSHDDRFGFLTFAPTNLGTTMRASVHIQLPKLAKDRKVLEDIASKFNLQVRGTRGEHTESEGGVYDISNKRRLGLTEYQAVREMQDGILEMIRMEKAAA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title The active site cysteine of arginine kinase: structural and functional analysis of partially active mutants
pubmed doi rcsb
source organism Limulus polyphemus
molecule tags Transferase
molecule keywords Arginine kinase
total genus 125
structure length 356
sequence length 356
ec nomenclature ec 2.7.3.3: Arginine kinase.
pdb deposition date 2004-02-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00217 ATP-gua_Ptrans ATP:guanido phosphotransferase, C-terminal catalytic domain
A PF02807 ATP-gua_PtransN ATP:guanido phosphotransferase, N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.135.10 Mainly Alpha Orthogonal Bundle Transferase Creatine Kinase; Chain A, domain 1 ATP:guanido phosphotransferase, N-terminal domain 1sd0A01
3.30.590.10 Alpha Beta 2-Layer Sandwich Creatine Kinase; Chain A, domain 2 Glutamine synthetase/guanido kinase, catalytic domain 1sd0A02
1P50A 3ZXRA 1FPYA 1F1HA 5J99A 5J9AA 1LGRA 4LNFA 4ACFA 3JU5A 4GVZA 4RF8A 3DRBA 4GW2A 3M10A 1HTOA 3NG0A 4RF6A 4BG4B 3JPZA 1BG0A 2WGSA 3ZXVA 2GLSA 4BHLA 1P52A 3B6RA 4LNOA 4BG4A 4XYCA 4AM1A 4S0RA 2CRKA 1CRKA 3DREA 3JQ3A 4RF9A 1M15A 2LGSA 2BVCA 1RL9A 1QK1A 4Q2RA 1F52A 4LNKA 1I0EA 4LNNA 4S17A 1HTQA 4GVYA 1VRPA 2J1QA 3L2DA 3L2EB 3L2EA 1SD0A 4Z9MA 4HPPA 1U6RA 3JU6A 1G0WA 1QH4A 4GW0A 4LNIA 2WHIA 4RF7A
chains in the Genus database with same CATH superfamily
2UU7A 5J99A 1LGRA 3ZXVA 4BHLA 3LVVA 4S0RA 1RL9A 4Q2RA 4S17A 4LNNA 4GVYA 3L2DA 4Z9MA 1SD0A 1QH4A 2WHIA 2D3AA 3LN6A 1F1HA 5J9AA 4LNFA 3JU5A 3NG0A 4RF6A 4BG4B 3JPZA 1VA6A 2QC8A 1R8GA 3LVWA 1TT4A 3IG5A 4BAXA 3NZTA 1V4GA 3B6RA 4LNOA 3IG8A 3LN7A 3DREA 4RF9A 2GWDA 2BVCA 1F52A 2J1QA 3FKYA 3L2EA 2D32A 2OJWA 4RF7A 1FPYA 4ACFA 4GVZA 4RF8A 3DRBA 2GWCA 3M10A 1HTOA 2WGSA 2GLSA 2D3BA 4BG4A 4XYCA 4AM1A 1CRKA 1M15A 1QK1A 1HTQA 1I0EA 1VRPA 3L2EB 4HPPA 1U6RA 4LNIA 1P50A 3ZXRA 4GW2A 1BG0A 1P52A 2CRKA 3JQ3A 2LGSA 2D33A 2D3CA 4LNKA 3JU6A 1G0WA 4GW0A
chains in the Genus database with same CATH topology
1P50A 3ZXRA 1FPYA 1F1HA 5J99A 5J9AA 1LGRA 4LNFA 4ACFA 3JU5A 4GVZA 4RF8A 3DRBA 4GW2A 3M10A 1HTOA 3NG0A 4RF6A 4BG4B 3JPZA 1BG0A 2WGSA 3ZXVA 2GLSA 4BHLA 1P52A 3B6RA 4LNOA 4BG4A 4XYCA 4AM1A 4S0RA 2CRKA 1CRKA 3DREA 3JQ3A 4RF9A 1M15A 2LGSA 2BVCA 1RL9A 1QK1A 4Q2RA 1F52A 4LNKA 1I0EA 4LNNA 4S17A 1HTQA 4GVYA 1VRPA 2J1QA 3L2DA 3L2EB 3L2EA 1SD0A 4Z9MA 4HPPA 1U6RA 3JU6A 1G0WA 1QH4A 4GW0A 4LNIA 2WHIA 4RF7A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1P50 A;  3ZXR A;  1FPY A;  1F1H A;  5J99 A;  5J9A A;  1LGR A;  4LNF A;  4ACF A;  3JU5 A;  4GVZ A;  4RF8 A;  3DRB A;  4GW2 A;  3M10 A;  1HTO A;  3NG0 A;  4RF6 A;  4BG4 B;  3JPZ A;  1BG0 A;  2WGS A;  3ZXV A;  2GLS A;  4BHL A;  1P52 A;  3B6R A;  4LNO A;  4BG4 A;  4XYC A;  4AM1 A;  4S0R A;  2CRK A;  1CRK A;  3DRE A;  3JQ3 A;  4RF9 A;  1M15 A;  2LGS A;  2BVC A;  1RL9 A;  1QK1 A;  4Q2R A;  1F52 A;  4LNK A;  1I0E A;  4LNN A;  4S17 A;  1HTQ A;  4GVY A;  1VRP A;  2J1Q A;  3L2D A;  3L2E B;  3L2E A;  1SD0 A;  4Z9M A;  4HPP A;  1U6R A;  3JU6 A;  1G0W A;  1QH4 A;  4GW0 A;  4LNI A;  2WHI A;  4RF7 A; 
#chains in the Genus database with same CATH topology
 2UU7 A;  5J99 A;  1LGR A;  3ZXV A;  4BHL A;  3LVV A;  4S0R A;  1RL9 A;  4Q2R A;  4S17 A;  4LNN A;  4GVY A;  3L2D A;  4Z9M A;  1SD0 A;  1QH4 A;  2WHI A;  2D3A A;  3LN6 A;  1F1H A;  5J9A A;  4LNF A;  3JU5 A;  3NG0 A;  4RF6 A;  4BG4 B;  3JPZ A;  1VA6 A;  2QC8 A;  1R8G A;  3LVW A;  1TT4 A;  3IG5 A;  4BAX A;  3NZT A;  1V4G A;  3B6R A;  4LNO A;  3IG8 A;  3LN7 A;  3DRE A;  4RF9 A;  2GWD A;  2BVC A;  1F52 A;  2J1Q A;  3FKY A;  3L2E A;  2D32 A;  2OJW A;  4RF7 A;  1FPY A;  4ACF A;  4GVZ A;  4RF8 A;  3DRB A;  2GWC A;  3M10 A;  1HTO A;  2WGS A;  2GLS A;  2D3B A;  4BG4 A;  4XYC A;  4AM1 A;  1CRK A;  1M15 A;  1QK1 A;  1HTQ A;  1I0E A;  1VRP A;  3L2E B;  4HPP A;  1U6R A;  4LNI A;  1P50 A;  3ZXR A;  4GW2 A;  1BG0 A;  1P52 A;  2CRK A;  3JQ3 A;  2LGS A;  2D33 A;  2D3C A;  4LNK A;  3JU6 A;  1G0W A;  4GW0 A; 
#chains in the Genus database with same CATH homology
 1P50 A;  3ZXR A;  1FPY A;  1F1H A;  5J99 A;  5J9A A;  1LGR A;  4LNF A;  4ACF A;  3JU5 A;  4GVZ A;  4RF8 A;  3DRB A;  4GW2 A;  3M10 A;  1HTO A;  3NG0 A;  4RF6 A;  4BG4 B;  3JPZ A;  1BG0 A;  2WGS A;  3ZXV A;  2GLS A;  4BHL A;  1P52 A;  3B6R A;  4LNO A;  4BG4 A;  4XYC A;  4AM1 A;  4S0R A;  2CRK A;  1CRK A;  3DRE A;  3JQ3 A;  4RF9 A;  1M15 A;  2LGS A;  2BVC A;  1RL9 A;  1QK1 A;  4Q2R A;  1F52 A;  4LNK A;  1I0E A;  4LNN A;  4S17 A;  1HTQ A;  4GVY A;  1VRP A;  2J1Q A;  3L2D A;  3L2E B;  3L2E A;  1SD0 A;  4Z9M A;  4HPP A;  1U6R A;  3JU6 A;  1G0W A;  1QH4 A;  4GW0 A;  4LNI A;  2WHI A;  4RF7 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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