3L2EA

Glycocyamine kinase, alpha-beta heterodimer from marine worm namalycastis sp.
Total Genus 127
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
127
sequence length
373
structure length
373
Chain Sequence
FKDYTREKFAKENFPDLSKHNNVMASQLTYELYEKYWDKVTPNGVTFDKCIQTGVDNPGNKFYGKKTGCVFGDEYSYECYKEFFDKCIEEIHHFKPSDKHPAPDLDHNKLVGGVFEDKYVKSCRIRCGRSVKGVCLPPAMSRAERRLVEKVVSDALGGLKGDLAGKYYPLTTMNEKDQEQLIEDHFLFEKPTGALLTTSGCARDWPDGRGIWHNNEKNFLVWINEEDHIRVISMQKGGDLKAVFSRFARGLLEVERLMKECGHGLMHNDRLGYICTCPTNMGTVVRASVHLRLAFLEKHPRFDEMLGKLRLGKRGTGGESSLATDSTYDISNWARLGKSERELVQVLVDGVNLLIACDKKLEAGQSIDDMIPK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structural basis for the mechanism and substrate specificity of glycocyamine kinase, a phosphagen kinase family member.
pubmed doi rcsb
source organism Namalycastis sp. st01
molecule tags Transferase
molecule keywords Glycocyamine kinase alpha chain
total genus 127
structure length 373
sequence length 373
chains with identical sequence C
ec nomenclature ec 2.7.3.1: Guanidinoacetate kinase.
pdb deposition date 2009-12-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00217 ATP-gua_Ptrans ATP:guanido phosphotransferase, C-terminal catalytic domain
A PF02807 ATP-gua_PtransN ATP:guanido phosphotransferase, N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.135.10 Mainly Alpha Orthogonal Bundle Transferase Creatine Kinase; Chain A, domain 1 ATP:guanido phosphotransferase, N-terminal domain 3l2eA01
3.30.590.10 Alpha Beta 2-Layer Sandwich Creatine Kinase; Chain A, domain 2 Glutamine synthetase/guanido kinase, catalytic domain 3l2eA02
1P50A 4BHLA 3L2EA 1I0EA 2WGSA 4BG4A 1M15A 4GVYA 1HTOA 4ACFA 4S17A 1CRKA 1VRPA 3M10A 2LGSA 4LNNA 1P52A 4BG4B 3ZXVA 5J9AA 4GW0A 4RF7A 4LNIA 4HPPA 4RF9A 3NG0A 4S0RA 3DREA 2CRKA 3L2EB 4Z9MA 4LNKA 3JU6A 4LNOA 1RL9A 3JPZA 3L2DA 4RF6A 4RF8A 1LGRA 3DRBA 2J1QA 4Q2RA 4LNFA 1F1HA 1FPYA 1G0WA 1QH4A 1U6RA 5J99A 4XYCA 1QK1A 1F52A 2GLSA 1BG0A 3ZXRA 1SD0A 3JU5A 2WHIA 3JQ3A 4GVZA 2BVCA 1HTQA 4GW2A 4AM1A 3B6RA
chains in the Genus database with same CATH superfamily
4BHLA 1M15A 1HTOA 2D3CA 4ACFA 1VA6A 4LNNA 4GW0A 1R8GA 2D33A 4LNIA 3NG0A 3DREA 3L2EB 4LNOA 2GWDA 4RF8A 3DRBA 4Q2RA 2D3AA 3LVWA 2OJWA 5J99A 2GLSA 3JU5A 2BVCA 3NZTA 3L2EA 2QC8A 2WGSA 1V4GA 4GVYA 4S17A 1VRPA 3M10A 2LGSA 3LVVA 1P52A 3ZXVA 3IG8A 2UU7A 4RF9A 1TT4A 3IG5A 2D32A 1U6RA 2WHIA 3JQ3A 1HTQA 4GW2A 1QH4A 1P50A 1I0EA 4BG4A 4RF7A 3LN6A 2CRKA 4Z9MA 1RL9A 2D3BA 4RF6A 3FKYA 1F1HA 1FPYA 1G0WA 1QK1A 1BG0A 1SD0A 4GVZA 3LN7A 4AM1A 3B6RA 1CRKA 2GWCA 4BG4B 5J9AA 4HPPA 4S0RA 4LNKA 3JU6A 3JPZA 3L2DA 1LGRA 4LNFA 2J1QA 4XYCA 1F52A 3ZXRA 4BAXA
chains in the Genus database with same CATH topology
1P50A 4BHLA 3L2EA 1I0EA 2WGSA 4BG4A 1M15A 4GVYA 1HTOA 4ACFA 4S17A 1CRKA 1VRPA 3M10A 2LGSA 4LNNA 1P52A 4BG4B 3ZXVA 5J9AA 4GW0A 4RF7A 4LNIA 4HPPA 4RF9A 3NG0A 4S0RA 3DREA 2CRKA 3L2EB 4Z9MA 4LNKA 3JU6A 4LNOA 1RL9A 3JPZA 3L2DA 4RF6A 4RF8A 1LGRA 3DRBA 2J1QA 4Q2RA 4LNFA 1F1HA 1FPYA 1G0WA 1QH4A 1U6RA 5J99A 4XYCA 1QK1A 1F52A 2GLSA 1BG0A 3ZXRA 1SD0A 3JU5A 2WHIA 3JQ3A 4GVZA 2BVCA 1HTQA 4GW2A 4AM1A 3B6RA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1P50 A;  4BHL A;  3L2E A;  1I0E A;  2WGS A;  4BG4 A;  1M15 A;  4GVY A;  1HTO A;  4ACF A;  4S17 A;  1CRK A;  1VRP A;  3M10 A;  2LGS A;  4LNN A;  1P52 A;  4BG4 B;  3ZXV A;  5J9A A;  4GW0 A;  4RF7 A;  4LNI A;  4HPP A;  4RF9 A;  3NG0 A;  4S0R A;  3DRE A;  2CRK A;  3L2E B;  4Z9M A;  4LNK A;  3JU6 A;  4LNO A;  1RL9 A;  3JPZ A;  3L2D A;  4RF6 A;  4RF8 A;  1LGR A;  3DRB A;  2J1Q A;  4Q2R A;  4LNF A;  1F1H A;  1FPY A;  1G0W A;  1QH4 A;  1U6R A;  5J99 A;  4XYC A;  1QK1 A;  1F52 A;  2GLS A;  1BG0 A;  3ZXR A;  1SD0 A;  3JU5 A;  2WHI A;  3JQ3 A;  4GVZ A;  2BVC A;  1HTQ A;  4GW2 A;  4AM1 A;  3B6R A; 
#chains in the Genus database with same CATH topology
 4BHL A;  1M15 A;  1HTO A;  2D3C A;  4ACF A;  1VA6 A;  4LNN A;  4GW0 A;  1R8G A;  2D33 A;  4LNI A;  3NG0 A;  3DRE A;  3L2E B;  4LNO A;  2GWD A;  4RF8 A;  3DRB A;  4Q2R A;  2D3A A;  3LVW A;  2OJW A;  5J99 A;  2GLS A;  3JU5 A;  2BVC A;  3NZT A;  3L2E A;  2QC8 A;  2WGS A;  1V4G A;  4GVY A;  4S17 A;  1VRP A;  3M10 A;  2LGS A;  3LVV A;  1P52 A;  3ZXV A;  3IG8 A;  2UU7 A;  4RF9 A;  1TT4 A;  3IG5 A;  2D32 A;  1U6R A;  2WHI A;  3JQ3 A;  1HTQ A;  4GW2 A;  1QH4 A;  1P50 A;  1I0E A;  4BG4 A;  4RF7 A;  3LN6 A;  2CRK A;  4Z9M A;  1RL9 A;  2D3B A;  4RF6 A;  3FKY A;  1F1H A;  1FPY A;  1G0W A;  1QK1 A;  1BG0 A;  1SD0 A;  4GVZ A;  3LN7 A;  4AM1 A;  3B6R A;  1CRK A;  2GWC A;  4BG4 B;  5J9A A;  4HPP A;  4S0R A;  4LNK A;  3JU6 A;  3JPZ A;  3L2D A;  1LGR A;  4LNF A;  2J1Q A;  4XYC A;  1F52 A;  3ZXR A;  4BAX A; 
#chains in the Genus database with same CATH homology
 1P50 A;  4BHL A;  3L2E A;  1I0E A;  2WGS A;  4BG4 A;  1M15 A;  4GVY A;  1HTO A;  4ACF A;  4S17 A;  1CRK A;  1VRP A;  3M10 A;  2LGS A;  4LNN A;  1P52 A;  4BG4 B;  3ZXV A;  5J9A A;  4GW0 A;  4RF7 A;  4LNI A;  4HPP A;  4RF9 A;  3NG0 A;  4S0R A;  3DRE A;  2CRK A;  3L2E B;  4Z9M A;  4LNK A;  3JU6 A;  4LNO A;  1RL9 A;  3JPZ A;  3L2D A;  4RF6 A;  4RF8 A;  1LGR A;  3DRB A;  2J1Q A;  4Q2R A;  4LNF A;  1F1H A;  1FPY A;  1G0W A;  1QH4 A;  1U6R A;  5J99 A;  4XYC A;  1QK1 A;  1F52 A;  2GLS A;  1BG0 A;  3ZXR A;  1SD0 A;  3JU5 A;  2WHI A;  3JQ3 A;  4GVZ A;  2BVC A;  1HTQ A;  4GW2 A;  4AM1 A;  3B6R A; 
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similar chains in the pdb database (?% sequence similarity)

 
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