4GVZA

Crystal structure of arginine kinase in complex with d-arginine, mgadp, and nitrate.
Total Genus 130
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
130
sequence length
356
structure length
356
Chain Sequence
VDQATLDKLEAGFKKLQEASDCKSLLKKHLTKDVFDSIKNKKTGMGATLLDVIQSGVENLDSGVGIYAPDAESYRTFGPLFDPIIDDYHGGFKLTDKHPPKQWGDINTLVGLDPAGQFIISTRVRCGRSLQGYPFNPCLTAEQYKEMEEKVSSTLSSMEDELKGTYYPLTGMSKATQQQLIDDHFLFKEGDRFLQTANACRYWPTGRGIFHNDAKTFLVWVNEEDHLRIISMQKGGDLKTVYKRLVTAVDNIESKLPFSHDDRFGFLTFCPTNLGTTMRASVHIQLPKLAKDRKVLEDIASKFNLQVRGTRGEHTESEGGVYDISNKRRLGLTEYQAVREMQDGILEMIKMEKAAA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structures of arginine kinase in complex with ADP, nitrate, and various phosphagen analogs.
pubmed doi rcsb
source organism Limulus polyphemus
molecule tags Transferase
molecule keywords Arginine kinase
total genus 130
structure length 356
sequence length 356
ec nomenclature ec 2.7.3.3: Arginine kinase.
pdb deposition date 2012-08-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00217 ATP-gua_Ptrans ATP:guanido phosphotransferase, C-terminal catalytic domain
A PF02807 ATP-gua_PtransN ATP:guanido phosphotransferase, N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.135.10 Mainly Alpha Orthogonal Bundle Transferase Creatine Kinase; Chain A, domain 1 ATP:guanido phosphotransferase, N-terminal domain 4gvzA01
3.30.590.10 Alpha Beta 2-Layer Sandwich Creatine Kinase; Chain A, domain 2 Glutamine synthetase/guanido kinase, catalytic domain 4gvzA02
3JU5A 4GW2A 1RL9A 1U6RA 2J1QA 1LGRA 4RF9A 2WHIA 4ACFA 4BG4B 2BVCA 4GVYA 5J99A 2GLSA 1QH4A 2LGSA 4LNOA 1G0WA 1HTQA 4Q2RA 1SD0A 3JQ3A 4GW0A 5J9AA 1P50A 3JPZA 1HTOA 1BG0A 4BHLA 4RF6A 4GVZA 4LNFA 3NG0A 3DRBA 3M10A 4RF7A 2WGSA 3L2DA 3JU6A 1FPYA 4XYCA 4LNKA 3ZXRA 1I0EA 4LNIA 3ZXVA 4AM1A 3DREA 1QK1A 1F1HA 3L2EB 1M15A 4RF8A 1P52A 2CRKA 4Z9MA 1F52A 1CRKA 4S17A 4S0RA 4LNNA 1VRPA 4HPPA 4BG4A 3B6RA 3L2EA
chains in the Genus database with same CATH superfamily
4GW2A 1LGRA 4RF9A 4ACFA 4BG4B 4GVYA 5J99A 2LGSA 1HTQA 1G0WA 3IG8A 5J9AA 3NZTA 4LNIA 3LN6A 4Z9MA 4LNNA 1VRPA 1R8GA 4Q2RA 3L2EA 3LVVA 1RL9A 1U6RA 1V4GA 2J1QA 2BVCA 1QH4A 4LNOA 3JQ3A 1P50A 4BHLA 4RF6A 4GVZA 4LNFA 3NG0A 3M10A 2WGSA 3L2DA 3ZXRA 2D3AA 1F1HA 2GWCA 1P52A 4S0RA 4S17A 2D32A 3B6RA 2WHIA 2GLSA 1SD0A 3JPZA 3FKYA 1HTOA 1VA6A 3IG5A 2QC8A 2D3BA 4RF7A 1FPYA 4LNKA 3ZXVA 3DREA 3L2EB 1M15A 4RF8A 2OJWA 1F52A 1CRKA 3LVWA 4BG4A 2UU7A 3JU5A 3LN7A 2D33A 4GW0A 1BG0A 4BAXA 3DRBA 3JU6A 2GWDA 2D3CA 4XYCA 1I0EA 4AM1A 1QK1A 1TT4A 2CRKA 4HPPA
chains in the Genus database with same CATH topology
3JU5A 4GW2A 1RL9A 1U6RA 2J1QA 1LGRA 4RF9A 2WHIA 4ACFA 4BG4B 2BVCA 4GVYA 5J99A 2GLSA 1QH4A 2LGSA 4LNOA 1G0WA 1HTQA 4Q2RA 1SD0A 3JQ3A 4GW0A 5J9AA 1P50A 3JPZA 1HTOA 1BG0A 4BHLA 4RF6A 4GVZA 4LNFA 3NG0A 3DRBA 3M10A 4RF7A 2WGSA 3L2DA 3JU6A 1FPYA 4XYCA 4LNKA 3ZXRA 1I0EA 4LNIA 3ZXVA 4AM1A 3DREA 1QK1A 1F1HA 3L2EB 1M15A 4RF8A 1P52A 2CRKA 4Z9MA 1F52A 1CRKA 4S17A 4S0RA 4LNNA 1VRPA 4HPPA 4BG4A 3B6RA 3L2EA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3JU5 A;  4GW2 A;  1RL9 A;  1U6R A;  2J1Q A;  1LGR A;  4RF9 A;  2WHI A;  4ACF A;  4BG4 B;  2BVC A;  4GVY A;  5J99 A;  2GLS A;  1QH4 A;  2LGS A;  4LNO A;  1G0W A;  1HTQ A;  4Q2R A;  1SD0 A;  3JQ3 A;  4GW0 A;  5J9A A;  1P50 A;  3JPZ A;  1HTO A;  1BG0 A;  4BHL A;  4RF6 A;  4GVZ A;  4LNF A;  3NG0 A;  3DRB A;  3M10 A;  4RF7 A;  2WGS A;  3L2D A;  3JU6 A;  1FPY A;  4XYC A;  4LNK A;  3ZXR A;  1I0E A;  4LNI A;  3ZXV A;  4AM1 A;  3DRE A;  1QK1 A;  1F1H A;  3L2E B;  1M15 A;  4RF8 A;  1P52 A;  2CRK A;  4Z9M A;  1F52 A;  1CRK A;  4S17 A;  4S0R A;  4LNN A;  1VRP A;  4HPP A;  4BG4 A;  3B6R A;  3L2E A; 
#chains in the Genus database with same CATH topology
 4GW2 A;  1LGR A;  4RF9 A;  4ACF A;  4BG4 B;  4GVY A;  5J99 A;  2LGS A;  1HTQ A;  1G0W A;  3IG8 A;  5J9A A;  3NZT A;  4LNI A;  3LN6 A;  4Z9M A;  4LNN A;  1VRP A;  1R8G A;  4Q2R A;  3L2E A;  3LVV A;  1RL9 A;  1U6R A;  1V4G A;  2J1Q A;  2BVC A;  1QH4 A;  4LNO A;  3JQ3 A;  1P50 A;  4BHL A;  4RF6 A;  4GVZ A;  4LNF A;  3NG0 A;  3M10 A;  2WGS A;  3L2D A;  3ZXR A;  2D3A A;  1F1H A;  2GWC A;  1P52 A;  4S0R A;  4S17 A;  2D32 A;  3B6R A;  2WHI A;  2GLS A;  1SD0 A;  3JPZ A;  3FKY A;  1HTO A;  1VA6 A;  3IG5 A;  2QC8 A;  2D3B A;  4RF7 A;  1FPY A;  4LNK A;  3ZXV A;  3DRE A;  3L2E B;  1M15 A;  4RF8 A;  2OJW A;  1F52 A;  1CRK A;  3LVW A;  4BG4 A;  2UU7 A;  3JU5 A;  3LN7 A;  2D33 A;  4GW0 A;  1BG0 A;  4BAX A;  3DRB A;  3JU6 A;  2GWD A;  2D3C A;  4XYC A;  1I0E A;  4AM1 A;  1QK1 A;  1TT4 A;  2CRK A;  4HPP A; 
#chains in the Genus database with same CATH homology
 3JU5 A;  4GW2 A;  1RL9 A;  1U6R A;  2J1Q A;  1LGR A;  4RF9 A;  2WHI A;  4ACF A;  4BG4 B;  2BVC A;  4GVY A;  5J99 A;  2GLS A;  1QH4 A;  2LGS A;  4LNO A;  1G0W A;  1HTQ A;  4Q2R A;  1SD0 A;  3JQ3 A;  4GW0 A;  5J9A A;  1P50 A;  3JPZ A;  1HTO A;  1BG0 A;  4BHL A;  4RF6 A;  4GVZ A;  4LNF A;  3NG0 A;  3DRB A;  3M10 A;  4RF7 A;  2WGS A;  3L2D A;  3JU6 A;  1FPY A;  4XYC A;  4LNK A;  3ZXR A;  1I0E A;  4LNI A;  3ZXV A;  4AM1 A;  3DRE A;  1QK1 A;  1F1H A;  3L2E B;  1M15 A;  4RF8 A;  1P52 A;  2CRK A;  4Z9M A;  1F52 A;  1CRK A;  4S17 A;  4S0R A;  4LNN A;  1VRP A;  4HPP A;  4BG4 A;  3B6R A;  3L2E A; 
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similar chains in the Genus database (?% sequence similarity)
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