3L2EB

Glycocyamine kinase, alpha-beta heterodimer from marine worm namalycastis sp.
Total Genus 127
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
127
sequence length
389
structure length
383
Chain Sequence
GSAIQDYFVKNRVGHSKPWESGKFKAADNFPDLSKHNNVMASQLTKELYEKYWDKVTPNGVTFDKCIQTGVDNPGNKFYGKKTGCVFGDEYSYECYKEFFDKCIEEIHHFKPSDKHPAPDLDHNKLVGGVFEDKYVKSCRIRCGRSVKGVCLPPAMSRAERRLVEKVVSDALGGLKGDLAGKYYPLTTMNEKDQEQLIEDHFLFEKPTGALLTTSGCARDWPDGRGIWHNNEKNFLVWINEEDHIRVISMQKGGDLKAVFSRFARGLLEVERLMKECGHGLMHNDRLGYICTCPTNMGTVVRASVHLRLAFLEKHPRFDEMLGKLRLGKRGLATDSTYDISNWARLGKSERELVQVLVDGVNLLIACDKKLEAGQSIDDMIPK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structural basis for the mechanism and substrate specificity of glycocyamine kinase, a phosphagen kinase family member.
pubmed doi rcsb
molecule tags Transferase
source organism Namalycastis sp. st01
molecule keywords Glycocyamine kinase alpha chain
total genus 127
structure length 383
sequence length 389
chains with identical sequence D
ec nomenclature ec 2.7.3.1: Guanidinoacetate kinase.
pdb deposition date 2009-12-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF00217 ATP-gua_Ptrans ATP:guanido phosphotransferase, C-terminal catalytic domain
B PF02807 ATP-gua_PtransN ATP:guanido phosphotransferase, N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.135.10 Mainly Alpha Orthogonal Bundle Transferase Creatine Kinase; Chain A, domain 1 ATP:guanido phosphotransferase, N-terminal domain 3l2eB01
3.30.590.10 Alpha Beta 2-Layer Sandwich Creatine Kinase; Chain A, domain 2 Glutamine synthetase/guanido kinase, catalytic domain 3l2eB02
1RL9A 4GVYA 2GLSA 3B6RA 1QH4A 1VRPA 4RF8A 4S17A 4BG4A 5J99A 1HTQA 1I0EA 1LGRA 3DRBA 4AM1A 1U6RA 4LNKA 5J9AA 4BHLA 3JPZA 4LNOA 1P52A 4RF6A 3JQ3A 2CRKA 3JU5A 1M15A 3L2EB 4S0RA 4XYCA 2J1QA 1G0WA 3L2DA 4Z9MA 1FPYA 3NG0A 3ZXRA 4Q2RA 1BG0A 4LNIA 2WHIA 4ACFA 1HTOA 4LNFA 4GW0A 3DREA 4GW2A 4RF9A 4BG4B 2BVCA 4HPPA 4RF7A 1QK1A 1P50A 3JU6A 2WGSA 3M10A 1CRKA 1F1HA 3L2EA 1F52A 4GVZA 4LNNA 3ZXVA 1SD0A 2LGSA
chains in the Genus database with same CATH superfamily
3B6RA 1QH4A 4S17A 4BG4A 3IG5A 2D32A 2QC8A 2D33A 3LN7A 2D3BA 3JU5A 2J1QA 1G0WA 3L2DA 4Q2RA 2WHIA 4ACFA 1HTOA 4GW2A 4BG4B 2BVCA 4RF7A 1QK1A 3LVVA 3IG8A 2GLSA 1VRPA 3NZTA 1I0EA 1LGRA 3DRBA 4AM1A 1U6RA 5J9AA 1P52A 2CRKA 1M15A 4BAXA 1FPYA 3NG0A 1BG0A 2UU7A 4LNFA 3DREA 3LN6A 3JU6A 1TT4A 1V4GA 3L2EA 3ZXVA 2D3CA 5J99A 2OJWA 4LNKA 3JQ3A 3LVWA 4S0RA 4Z9MA 3ZXRA 2GWDA 4LNIA 4HPPA 1P50A 2WGSA 1CRKA 4LNNA 1SD0A 2LGSA 1RL9A 4GVYA 4RF8A 1HTQA 4BHLA 3JPZA 4LNOA 3FKYA 4RF6A 4XYCA 3L2EB 1VA6A 4GW0A 4RF9A 3M10A 1F1HA 1R8GA 1F52A 2D3AA 4GVZA 2GWCA
chains in the Genus database with same CATH topology
1RL9A 4GVYA 2GLSA 3B6RA 1QH4A 1VRPA 4RF8A 4S17A 4BG4A 5J99A 1HTQA 1I0EA 1LGRA 3DRBA 4AM1A 1U6RA 4LNKA 5J9AA 4BHLA 3JPZA 4LNOA 1P52A 4RF6A 3JQ3A 2CRKA 3JU5A 1M15A 3L2EB 4S0RA 4XYCA 2J1QA 1G0WA 3L2DA 4Z9MA 1FPYA 3NG0A 3ZXRA 4Q2RA 1BG0A 4LNIA 2WHIA 4ACFA 1HTOA 4LNFA 4GW0A 3DREA 4GW2A 4RF9A 4BG4B 2BVCA 4HPPA 4RF7A 1QK1A 1P50A 3JU6A 2WGSA 3M10A 1CRKA 1F1HA 3L2EA 1F52A 4GVZA 4LNNA 3ZXVA 1SD0A 2LGSA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1RL9 A;  4GVY A;  2GLS A;  3B6R A;  1QH4 A;  1VRP A;  4RF8 A;  4S17 A;  4BG4 A;  5J99 A;  1HTQ A;  1I0E A;  1LGR A;  3DRB A;  4AM1 A;  1U6R A;  4LNK A;  5J9A A;  4BHL A;  3JPZ A;  4LNO A;  1P52 A;  4RF6 A;  3JQ3 A;  2CRK A;  3JU5 A;  1M15 A;  3L2E B;  4S0R A;  4XYC A;  2J1Q A;  1G0W A;  3L2D A;  4Z9M A;  1FPY A;  3NG0 A;  3ZXR A;  4Q2R A;  1BG0 A;  4LNI A;  2WHI A;  4ACF A;  1HTO A;  4LNF A;  4GW0 A;  3DRE A;  4GW2 A;  4RF9 A;  4BG4 B;  2BVC A;  4HPP A;  4RF7 A;  1QK1 A;  1P50 A;  3JU6 A;  2WGS A;  3M10 A;  1CRK A;  1F1H A;  3L2E A;  1F52 A;  4GVZ A;  4LNN A;  3ZXV A;  1SD0 A;  2LGS A; 
#chains in the Genus database with same CATH topology
 3B6R A;  1QH4 A;  4S17 A;  4BG4 A;  3IG5 A;  2D32 A;  2QC8 A;  2D33 A;  3LN7 A;  2D3B A;  3JU5 A;  2J1Q A;  1G0W A;  3L2D A;  4Q2R A;  2WHI A;  4ACF A;  1HTO A;  4GW2 A;  4BG4 B;  2BVC A;  4RF7 A;  1QK1 A;  3LVV A;  3IG8 A;  2GLS A;  1VRP A;  3NZT A;  1I0E A;  1LGR A;  3DRB A;  4AM1 A;  1U6R A;  5J9A A;  1P52 A;  2CRK A;  1M15 A;  4BAX A;  1FPY A;  3NG0 A;  1BG0 A;  2UU7 A;  4LNF A;  3DRE A;  3LN6 A;  3JU6 A;  1TT4 A;  1V4G A;  3L2E A;  3ZXV A;  2D3C A;  5J99 A;  2OJW A;  4LNK A;  3JQ3 A;  3LVW A;  4S0R A;  4Z9M A;  3ZXR A;  2GWD A;  4LNI A;  4HPP A;  1P50 A;  2WGS A;  1CRK A;  4LNN A;  1SD0 A;  2LGS A;  1RL9 A;  4GVY A;  4RF8 A;  1HTQ A;  4BHL A;  3JPZ A;  4LNO A;  3FKY A;  4RF6 A;  4XYC A;  3L2E B;  1VA6 A;  4GW0 A;  4RF9 A;  3M10 A;  1F1H A;  1R8G A;  1F52 A;  2D3A A;  4GVZ A;  2GWC A; 
#chains in the Genus database with same CATH homology
 1RL9 A;  4GVY A;  2GLS A;  3B6R A;  1QH4 A;  1VRP A;  4RF8 A;  4S17 A;  4BG4 A;  5J99 A;  1HTQ A;  1I0E A;  1LGR A;  3DRB A;  4AM1 A;  1U6R A;  4LNK A;  5J9A A;  4BHL A;  3JPZ A;  4LNO A;  1P52 A;  4RF6 A;  3JQ3 A;  2CRK A;  3JU5 A;  1M15 A;  3L2E B;  4S0R A;  4XYC A;  2J1Q A;  1G0W A;  3L2D A;  4Z9M A;  1FPY A;  3NG0 A;  3ZXR A;  4Q2R A;  1BG0 A;  4LNI A;  2WHI A;  4ACF A;  1HTO A;  4LNF A;  4GW0 A;  3DRE A;  4GW2 A;  4RF9 A;  4BG4 B;  2BVC A;  4HPP A;  4RF7 A;  1QK1 A;  1P50 A;  3JU6 A;  2WGS A;  3M10 A;  1CRK A;  1F1H A;  3L2E A;  1F52 A;  4GVZ A;  4LNN A;  3ZXV A;  1SD0 A;  2LGS A; 
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