3L2EB

Glycocyamine kinase, alpha-beta heterodimer from marine worm namalycastis sp.
Total Genus 127
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
127
sequence length
389
structure length
383
Chain Sequence
GSAIQDYFVKNRVGHSKPWESGKFKAADNFPDLSKHNNVMASQLTKELYEKYWDKVTPNGVTFDKCIQTGVDNPGNKFYGKKTGCVFGDEYSYECYKEFFDKCIEEIHHFKPSDKHPAPDLDHNKLVGGVFEDKYVKSCRIRCGRSVKGVCLPPAMSRAERRLVEKVVSDALGGLKGDLAGKYYPLTTMNEKDQEQLIEDHFLFEKPTGALLTTSGCARDWPDGRGIWHNNEKNFLVWINEEDHIRVISMQKGGDLKAVFSRFARGLLEVERLMKECGHGLMHNDRLGYICTCPTNMGTVVRASVHLRLAFLEKHPRFDEMLGKLRLGKRGLATDSTYDISNWARLGKSERELVQVLVDGVNLLIACDKKLEAGQSIDDMIPK
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
publication title Structural basis for the mechanism and substrate specificity of glycocyamine kinase, a phosphagen kinase family member.
pubmed doi rcsb
source organism Namalycastis sp. st01
molecule tags Transferase
molecule keywords Glycocyamine kinase alpha chain
total genus 127
structure length 383
sequence length 389
chains with identical sequence D
ec nomenclature ec 2.7.3.1: Guanidinoacetate kinase.
pdb deposition date 2009-12-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF00217 ATP-gua_Ptrans ATP:guanido phosphotransferase, C-terminal catalytic domain
B PF02807 ATP-gua_PtransN ATP:guanido phosphotransferase, N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.135.10 Mainly Alpha Orthogonal Bundle Transferase Creatine Kinase; Chain A, domain 1 ATP:guanido phosphotransferase, N-terminal domain 3l2eB01
3.30.590.10 Alpha Beta 2-Layer Sandwich Creatine Kinase; Chain A, domain 2 Glutamine synthetase/guanido kinase, catalytic domain 3l2eB02
2J1QA 3B6RA 4LNOA 3ZXVA 1HTOA 3DRBA 5J9AA 1VRPA 1QK1A 3JQ3A 3L2DA 1F1HA 5J99A 1FPYA 4LNNA 4AM1A 3ZXRA 1CRKA 1HTQA 1U6RA 2BVCA 3DREA 3JU5A 4S17A 4RF9A 4S0RA 4GW2A 3JPZA 1M15A 4GW0A 2CRKA 4BG4B 4BG4A 1BG0A 1SD0A 2LGSA 2WHIA 4RF8A 3L2EA 3L2EB 1P50A 4LNKA 1RL9A 2GLSA 1G0WA 4GVZA 3M10A 4BHLA 4RF6A 2WGSA 3NG0A 1P52A 4HPPA 4Z9MA 4LNFA 4XYCA 1I0EA 1F52A 4Q2RA 1LGRA 4RF7A 4LNIA 4ACFA 1QH4A 3JU6A 4GVYA
chains in the Genus database with same CATH superfamily
1VA6A 1V4GA 3NZTA 2BVCA 4BAXA 4BG4B 1R8GA 2D3AA 2QC8A 2D32A 1SD0A 2D33A 2LGSA 3L2EA 1RL9A 2GLSA 4GVZA 4BHLA 1LGRA 3JQ3A 3B6RA 4AM1A 1CRKA 1U6RA 3DREA 4S17A 4BG4A 4GW0A 4RF8A 1P50A 3LVWA 2GWDA 3M10A 2WGSA 3LN6A 4RF7A 2UU7A 1QH4A 4GVYA 3FKYA 2J1QA 4LNOA 3ZXVA 3DRBA 5J9AA 2D3CA 1QK1A 1F1HA 5J99A 3IG8A 1HTQA 3JU5A 4GW2A 3JPZA 2CRKA 1BG0A 2GWCA 2WHIA 1G0WA 1F52A 4Q2RA 2OJWA 3JU6A 1HTOA 1VRPA 3LVVA 3L2DA 3ZXRA 1FPYA 4LNNA 4RF9A 4S0RA 1M15A 3LN7A 3L2EB 4LNKA 1TT4A 2D3BA 3NG0A 4RF6A 1P52A 4HPPA 4Z9MA 4LNFA 4XYCA 1I0EA 3IG5A 4LNIA 4ACFA
chains in the Genus database with same CATH topology
2J1QA 3B6RA 4LNOA 3ZXVA 1HTOA 3DRBA 5J9AA 1VRPA 1QK1A 3JQ3A 3L2DA 1F1HA 5J99A 1FPYA 4LNNA 4AM1A 3ZXRA 1CRKA 1HTQA 1U6RA 2BVCA 3DREA 3JU5A 4S17A 4RF9A 4S0RA 4GW2A 3JPZA 1M15A 4GW0A 2CRKA 4BG4B 4BG4A 1BG0A 1SD0A 2LGSA 2WHIA 4RF8A 3L2EA 3L2EB 1P50A 4LNKA 1RL9A 2GLSA 1G0WA 4GVZA 3M10A 4BHLA 4RF6A 2WGSA 3NG0A 1P52A 4HPPA 4Z9MA 4LNFA 4XYCA 1I0EA 1F52A 4Q2RA 1LGRA 4RF7A 4LNIA 4ACFA 1QH4A 3JU6A 4GVYA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2J1Q A;  3B6R A;  4LNO A;  3ZXV A;  1HTO A;  3DRB A;  5J9A A;  1VRP A;  1QK1 A;  3JQ3 A;  3L2D A;  1F1H A;  5J99 A;  1FPY A;  4LNN A;  4AM1 A;  3ZXR A;  1CRK A;  1HTQ A;  1U6R A;  2BVC A;  3DRE A;  3JU5 A;  4S17 A;  4RF9 A;  4S0R A;  4GW2 A;  3JPZ A;  1M15 A;  4GW0 A;  2CRK A;  4BG4 B;  4BG4 A;  1BG0 A;  1SD0 A;  2LGS A;  2WHI A;  4RF8 A;  3L2E A;  3L2E B;  1P50 A;  4LNK A;  1RL9 A;  2GLS A;  1G0W A;  4GVZ A;  3M10 A;  4BHL A;  4RF6 A;  2WGS A;  3NG0 A;  1P52 A;  4HPP A;  4Z9M A;  4LNF A;  4XYC A;  1I0E A;  1F52 A;  4Q2R A;  1LGR A;  4RF7 A;  4LNI A;  4ACF A;  1QH4 A;  3JU6 A;  4GVY A; 
#chains in the Genus database with same CATH topology
 1VA6 A;  1V4G A;  3NZT A;  2BVC A;  4BAX A;  4BG4 B;  1R8G A;  2D3A A;  2QC8 A;  2D32 A;  1SD0 A;  2D33 A;  2LGS A;  3L2E A;  1RL9 A;  2GLS A;  4GVZ A;  4BHL A;  1LGR A;  3JQ3 A;  3B6R A;  4AM1 A;  1CRK A;  1U6R A;  3DRE A;  4S17 A;  4BG4 A;  4GW0 A;  4RF8 A;  1P50 A;  3LVW A;  2GWD A;  3M10 A;  2WGS A;  3LN6 A;  4RF7 A;  2UU7 A;  1QH4 A;  4GVY A;  3FKY A;  2J1Q A;  4LNO A;  3ZXV A;  3DRB A;  5J9A A;  2D3C A;  1QK1 A;  1F1H A;  5J99 A;  3IG8 A;  1HTQ A;  3JU5 A;  4GW2 A;  3JPZ A;  2CRK A;  1BG0 A;  2GWC A;  2WHI A;  1G0W A;  1F52 A;  4Q2R A;  2OJW A;  3JU6 A;  1HTO A;  1VRP A;  3LVV A;  3L2D A;  3ZXR A;  1FPY A;  4LNN A;  4RF9 A;  4S0R A;  1M15 A;  3LN7 A;  3L2E B;  4LNK A;  1TT4 A;  2D3B A;  3NG0 A;  4RF6 A;  1P52 A;  4HPP A;  4Z9M A;  4LNF A;  4XYC A;  1I0E A;  3IG5 A;  4LNI A;  4ACF A; 
#chains in the Genus database with same CATH homology
 2J1Q A;  3B6R A;  4LNO A;  3ZXV A;  1HTO A;  3DRB A;  5J9A A;  1VRP A;  1QK1 A;  3JQ3 A;  3L2D A;  1F1H A;  5J99 A;  1FPY A;  4LNN A;  4AM1 A;  3ZXR A;  1CRK A;  1HTQ A;  1U6R A;  2BVC A;  3DRE A;  3JU5 A;  4S17 A;  4RF9 A;  4S0R A;  4GW2 A;  3JPZ A;  1M15 A;  4GW0 A;  2CRK A;  4BG4 B;  4BG4 A;  1BG0 A;  1SD0 A;  2LGS A;  2WHI A;  4RF8 A;  3L2E A;  3L2E B;  1P50 A;  4LNK A;  1RL9 A;  2GLS A;  1G0W A;  4GVZ A;  3M10 A;  4BHL A;  4RF6 A;  2WGS A;  3NG0 A;  1P52 A;  4HPP A;  4Z9M A;  4LNF A;  4XYC A;  1I0E A;  1F52 A;  4Q2R A;  1LGR A;  4RF7 A;  4LNI A;  4ACF A;  1QH4 A;  3JU6 A;  4GVY A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...