3L2EB

Glycocyamine kinase, alpha-beta heterodimer from marine worm namalycastis sp.
Total Genus 127
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
127
sequence length
389
structure length
383
Chain Sequence
b'GSAIQDYFVKNRVGHSKPWESGKFKAADNFPDLSKHNNVMASQLTKELYEKYWDKVTPNGVTFDKCIQTGVDNPGNKFYGKKTGCVFGDEYSYECYKEFFDKCIEEIHHFKPSDKHPAPDLDHNKLVGGVFEDKYVKSCRIRCGRSVKGVCLPPAMSRAERRLVEKVVSDALGGLKGDLAGKYYPLTTMNEKDQEQLIEDHFLFEKPTGALLTTSGCARDWPDGRGIWHNNEKNFLVWINEEDHIRVISMQKGGDLKAVFSRFARGLLEVERLMKECGHGLMHNDRLGYICTCPTNMGTVVRASVHLRLAFLEKHPRFDEMLGKLRLGKRGLATDSTYDISNWARLGKSERELVQVLVDGVNLLIACDKKLEAGQSIDDMIPK'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Glycocyamine kinase alpha chain
publication title Structural basis for the mechanism and substrate specificity of glycocyamine kinase, a phosphagen kinase family member.
pubmed doi rcsb
source organism Namalycastis sp. st01
molecule tags Transferase
total genus 127
structure length 383
sequence length 389
chains with identical sequence D
ec nomenclature ec 2.7.3.1: Guanidinoacetate kinase.
pdb deposition date 2009-12-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF00217 ATP-gua_Ptrans ATP:guanido phosphotransferase, C-terminal catalytic domain
B PF02807 ATP-gua_PtransN ATP:guanido phosphotransferase, N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.135.10 Mainly Alpha Orthogonal Bundle Transferase Creatine Kinase; Chain A, domain 1 ATP:guanido phosphotransferase, N-terminal domain 3l2eB01
3.30.590.10 Alpha Beta 2-Layer Sandwich Creatine Kinase; Chain A, domain 2 Glutamine synthetase/guanido kinase, catalytic domain 3l2eB02
1F1HA 2WGSA 3DREA 1P52A 1QH4A 2CRKA 2LGSA 4BG4A 4AM1A 1HTOA 4LNNA 1U6RA 4RF6A 4RF7A 4Q2RA 3B6RA 2GLSA 3M10A 3L2EA 4XYCA 1P50A 1VRPA 2J1QA 1LGRA 4LNOA 4BG4B 3JU5A 2BVCA 3DRBA 4RF8A 3L2EB 1RL9A 4GVYA 1CRKA 4RF9A 1I0EA 3ZXRA 4S0RA 3L2DA 3JPZA 5J9AA 1FPYA 4ACFA 1BG0A 5J99A 4GVZA 4Z9MA 4BHLA 4LNIA 3JQ3A 4LNFA 4GW2A 1SD0A 1G0WA 3NG0A 3JU6A 1F52A 2WHIA 4HPPA 4S17A 1M15A 4GW0A 1QK1A 4LNKA 3ZXVA 1HTQA
chains in the Genus database with same CATH superfamily
3DREA 2CRKA 2LGSA 3IG8A 1HTOA 4LNNA 1U6RA 4RF7A 2GLSA 3L2EA 4LNOA 2J1QA 3JU5A 2D3BA 1R8GA 2D3CA 4S0RA 3L2DA 3JQ3A 1SD0A 2WHIA 2GWDA 4GW0A 4LNKA 1F1HA 1V4GA 1P50A 2UU7A 4BG4B 3NZTA 2D3AA 3DRBA 3L2EB 3LN7A 1CRKA 1I0EA 3ZXRA 3JPZA 1BG0A 5J99A 2GWCA 4LNFA 4BAXA 1F52A 2WGSA 1QH4A 3M10A 2QC8A 1LGRA 3LN6A 3IG5A 4GVYA 4RF9A 5J9AA 4ACFA 4GVZA 4Z9MA 3NG0A 3JU6A 4HPPA 4S17A 1M15A 1HTQA 1P52A 2D33A 4BG4A 4AM1A 4RF6A 2OJWA 4Q2RA 3B6RA 4XYCA 1VA6A 1VRPA 2D32A 2BVCA 4RF8A 1RL9A 1FPYA 3FKYA 4LNIA 4BHLA 3LVWA 1TT4A 4GW2A 1G0WA 3ZXVA 3LVVA 1QK1A
chains in the Genus database with same CATH topology
1F1HA 2WGSA 3DREA 1P52A 1QH4A 2CRKA 2LGSA 4BG4A 4AM1A 1HTOA 4LNNA 1U6RA 4RF6A 4RF7A 4Q2RA 3B6RA 2GLSA 3M10A 3L2EA 4XYCA 1P50A 1VRPA 2J1QA 1LGRA 4LNOA 4BG4B 3JU5A 2BVCA 3DRBA 4RF8A 3L2EB 1RL9A 4GVYA 1CRKA 4RF9A 1I0EA 3ZXRA 4S0RA 3L2DA 3JPZA 5J9AA 1FPYA 4ACFA 1BG0A 5J99A 4GVZA 4Z9MA 4BHLA 4LNIA 3JQ3A 4LNFA 4GW2A 1SD0A 1G0WA 3NG0A 3JU6A 1F52A 2WHIA 4HPPA 4S17A 1M15A 4GW0A 1QK1A 4LNKA 3ZXVA 1HTQA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1F1H A;  2WGS A;  3DRE A;  1P52 A;  1QH4 A;  2CRK A;  2LGS A;  4BG4 A;  4AM1 A;  1HTO A;  4LNN A;  1U6R A;  4RF6 A;  4RF7 A;  4Q2R A;  3B6R A;  2GLS A;  3M10 A;  3L2E A;  4XYC A;  1P50 A;  1VRP A;  2J1Q A;  1LGR A;  4LNO A;  4BG4 B;  3JU5 A;  2BVC A;  3DRB A;  4RF8 A;  3L2E B;  1RL9 A;  4GVY A;  1CRK A;  4RF9 A;  1I0E A;  3ZXR A;  4S0R A;  3L2D A;  3JPZ A;  5J9A A;  1FPY A;  4ACF A;  1BG0 A;  5J99 A;  4GVZ A;  4Z9M A;  4BHL A;  4LNI A;  3JQ3 A;  4LNF A;  4GW2 A;  1SD0 A;  1G0W A;  3NG0 A;  3JU6 A;  1F52 A;  2WHI A;  4HPP A;  4S17 A;  1M15 A;  4GW0 A;  1QK1 A;  4LNK A;  3ZXV A;  1HTQ A; 
#chains in the Genus database with same CATH topology
 3DRE A;  2CRK A;  2LGS A;  3IG8 A;  1HTO A;  4LNN A;  1U6R A;  4RF7 A;  2GLS A;  3L2E A;  4LNO A;  2J1Q A;  3JU5 A;  2D3B A;  1R8G A;  2D3C A;  4S0R A;  3L2D A;  3JQ3 A;  1SD0 A;  2WHI A;  2GWD A;  4GW0 A;  4LNK A;  1F1H A;  1V4G A;  1P50 A;  2UU7 A;  4BG4 B;  3NZT A;  2D3A A;  3DRB A;  3L2E B;  3LN7 A;  1CRK A;  1I0E A;  3ZXR A;  3JPZ A;  1BG0 A;  5J99 A;  2GWC A;  4LNF A;  4BAX A;  1F52 A;  2WGS A;  1QH4 A;  3M10 A;  2QC8 A;  1LGR A;  3LN6 A;  3IG5 A;  4GVY A;  4RF9 A;  5J9A A;  4ACF A;  4GVZ A;  4Z9M A;  3NG0 A;  3JU6 A;  4HPP A;  4S17 A;  1M15 A;  1HTQ A;  1P52 A;  2D33 A;  4BG4 A;  4AM1 A;  4RF6 A;  2OJW A;  4Q2R A;  3B6R A;  4XYC A;  1VA6 A;  1VRP A;  2D32 A;  2BVC A;  4RF8 A;  1RL9 A;  1FPY A;  3FKY A;  4LNI A;  4BHL A;  3LVW A;  1TT4 A;  4GW2 A;  1G0W A;  3ZXV A;  3LVV A;  1QK1 A; 
#chains in the Genus database with same CATH homology
 1F1H A;  2WGS A;  3DRE A;  1P52 A;  1QH4 A;  2CRK A;  2LGS A;  4BG4 A;  4AM1 A;  1HTO A;  4LNN A;  1U6R A;  4RF6 A;  4RF7 A;  4Q2R A;  3B6R A;  2GLS A;  3M10 A;  3L2E A;  4XYC A;  1P50 A;  1VRP A;  2J1Q A;  1LGR A;  4LNO A;  4BG4 B;  3JU5 A;  2BVC A;  3DRB A;  4RF8 A;  3L2E B;  1RL9 A;  4GVY A;  1CRK A;  4RF9 A;  1I0E A;  3ZXR A;  4S0R A;  3L2D A;  3JPZ A;  5J9A A;  1FPY A;  4ACF A;  1BG0 A;  5J99 A;  4GVZ A;  4Z9M A;  4BHL A;  4LNI A;  3JQ3 A;  4LNF A;  4GW2 A;  1SD0 A;  1G0W A;  3NG0 A;  3JU6 A;  1F52 A;  2WHI A;  4HPP A;  4S17 A;  1M15 A;  4GW0 A;  1QK1 A;  4LNK A;  3ZXV A;  1HTQ A; 
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similar chains in the pdb database (?% sequence similarity)

 
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