3L2DA

Glycocyamine kinase, beta-beta homodimer from marine worm namalycastis sp.
Total Genus 127
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
127
sequence length
367
structure length
367
Chain Sequence
b'KFKAADNFPDLSKHNNVMASQLTKELYEKYWDKVTPNGVTFDKCIQTGVDNPGNKFYGKKTGCVFGDEYSYECYKEFFDKCIEEIHHFKPSDKHPAPDLDHNKLVGGVFEDKYVKSCRIRCGRSVKGVCLPPAMSRAERRLVEKVVSDALGGLKGDLAGKYYPLTTMNEKDQEQLIEDHFLFEKPTGALLTTSGCARDWPDGRGIWHNNEKNFLVWINEEDHIRVISMQKGGDLKAVFSRFARGLLEVERLMKECGHGLMHNDRLGYICTCPTNMGTVVRASVHLRLAFLEKHPRFDEMLGKLRLGKRGTGGESSLATDSTYDISNWARLGKSERELVQVLVDGVNLLIACDKKLEAGQSIDDMIPK'
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule keywords Glycocyamine kinase beta chain
publication title Structural basis for the mechanism and substrate specificity of glycocyamine kinase, a phosphagen kinase family member.
pubmed doi rcsb
source organism Namalycastis sp. st01
molecule tags Transferase
total genus 127
structure length 367
sequence length 367
chains with identical sequence B, C, D
ec nomenclature ec 2.7.3.1: Guanidinoacetate kinase.
pdb deposition date 2009-12-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00217 ATP-gua_Ptrans ATP:guanido phosphotransferase, C-terminal catalytic domain
A PF02807 ATP-gua_PtransN ATP:guanido phosphotransferase, N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.135.10 Mainly Alpha Orthogonal Bundle Transferase Creatine Kinase; Chain A, domain 1 ATP:guanido phosphotransferase, N-terminal domain 3l2dA01
3.30.590.10 Alpha Beta 2-Layer Sandwich Creatine Kinase; Chain A, domain 2 Glutamine synthetase/guanido kinase, catalytic domain 3l2dA02
3L2EB 4LNNA 1FPYA 4GVYA 4RF9A 4BHLA 1U6RA 4AM1A 4GVZA 1I0EA 1VRPA 5J99A 3L2EA 4GW0A 3NG0A 4BG4B 2J1QA 1M15A 2BVCA 3DRBA 1LGRA 1CRKA 3JU6A 4Q2RA 1SD0A 1BG0A 3B6RA 3M10A 4RF6A 1F1HA 1HTOA 1QK1A 4ACFA 4LNOA 1QH4A 4BG4A 4LNKA 1HTQA 3L2DA 2LGSA 4LNIA 4S0RA 4XYCA 2CRKA 2GLSA 2WHIA 4GW2A 3ZXVA 1G0WA 3ZXRA 1RL9A 5J9AA 4Z9MA 4HPPA 4LNFA 3DREA 3JQ3A 2WGSA 4RF7A 4S17A 4RF8A 3JPZA 1P50A 1F52A 1P52A 3JU5A
chains in the Genus database with same CATH superfamily
4GVYA 1U6RA 2GWDA 1VA6A 1VRPA 3L2EA 1M15A 3DRBA 3B6RA 3NZTA 1QH4A 4BG4A 2LGSA 4XYCA 3IG8A 2WHIA 5J9AA 4LNFA 3DREA 4S17A 1P50A 4LNNA 2QC8A 2UU7A 4AM1A 5J99A 2BVCA 1F1HA 1SD0A 3M10A 4ACFA 2D3CA 3L2DA 3FKYA 4LNIA 4S0RA 4GW2A 3ZXVA 3ZXRA 4Z9MA 3JQ3A 2D33A 3L2EB 1FPYA 4BAXA 1I0EA 1V4GA 3NG0A 4GW0A 4BG4B 1TT4A 3JU5A 1CRKA 4Q2RA 4RF6A 1HTOA 1BG0A 3LN7A 4LNKA 1HTQA 2CRKA 2GLSA 1G0WA 4HPPA 2WGSA 2D3AA 4RF8A 1P52A 3LVWA 4BHLA 4RF9A 2GWCA 2D32A 1R8GA 4GVZA 2J1QA 2D3BA 3JU6A 1QK1A 4LNOA 2OJWA 3LN6A 1RL9A 4RF7A 3IG5A 3JPZA 1F52A 1LGRA 3LVVA
chains in the Genus database with same CATH topology
3L2EB 4LNNA 1FPYA 4GVYA 4RF9A 4BHLA 1U6RA 4AM1A 4GVZA 1I0EA 1VRPA 5J99A 3L2EA 4GW0A 3NG0A 4BG4B 2J1QA 1M15A 2BVCA 3DRBA 1LGRA 1CRKA 3JU6A 4Q2RA 1SD0A 1BG0A 3B6RA 3M10A 4RF6A 1F1HA 1HTOA 1QK1A 4ACFA 4LNOA 1QH4A 4BG4A 4LNKA 1HTQA 3L2DA 2LGSA 4LNIA 4S0RA 4XYCA 2CRKA 2GLSA 2WHIA 4GW2A 3ZXVA 1G0WA 3ZXRA 1RL9A 5J9AA 4Z9MA 4HPPA 4LNFA 3DREA 3JQ3A 2WGSA 4RF7A 4S17A 4RF8A 3JPZA 1P50A 1F52A 1P52A 3JU5A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3L2E B;  4LNN A;  1FPY A;  4GVY A;  4RF9 A;  4BHL A;  1U6R A;  4AM1 A;  4GVZ A;  1I0E A;  1VRP A;  5J99 A;  3L2E A;  4GW0 A;  3NG0 A;  4BG4 B;  2J1Q A;  1M15 A;  2BVC A;  3DRB A;  1LGR A;  1CRK A;  3JU6 A;  4Q2R A;  1SD0 A;  1BG0 A;  3B6R A;  3M10 A;  4RF6 A;  1F1H A;  1HTO A;  1QK1 A;  4ACF A;  4LNO A;  1QH4 A;  4BG4 A;  4LNK A;  1HTQ A;  3L2D A;  2LGS A;  4LNI A;  4S0R A;  4XYC A;  2CRK A;  2GLS A;  2WHI A;  4GW2 A;  3ZXV A;  1G0W A;  3ZXR A;  1RL9 A;  5J9A A;  4Z9M A;  4HPP A;  4LNF A;  3DRE A;  3JQ3 A;  2WGS A;  4RF7 A;  4S17 A;  4RF8 A;  3JPZ A;  1P50 A;  1F52 A;  1P52 A;  3JU5 A; 
#chains in the Genus database with same CATH topology
 4GVY A;  1U6R A;  2GWD A;  1VA6 A;  1VRP A;  3L2E A;  1M15 A;  3DRB A;  3B6R A;  3NZT A;  1QH4 A;  4BG4 A;  2LGS A;  4XYC A;  3IG8 A;  2WHI A;  5J9A A;  4LNF A;  3DRE A;  4S17 A;  1P50 A;  4LNN A;  2QC8 A;  2UU7 A;  4AM1 A;  5J99 A;  2BVC A;  1F1H A;  1SD0 A;  3M10 A;  4ACF A;  2D3C A;  3L2D A;  3FKY A;  4LNI A;  4S0R A;  4GW2 A;  3ZXV A;  3ZXR A;  4Z9M A;  3JQ3 A;  2D33 A;  3L2E B;  1FPY A;  4BAX A;  1I0E A;  1V4G A;  3NG0 A;  4GW0 A;  4BG4 B;  1TT4 A;  3JU5 A;  1CRK A;  4Q2R A;  4RF6 A;  1HTO A;  1BG0 A;  3LN7 A;  4LNK A;  1HTQ A;  2CRK A;  2GLS A;  1G0W A;  4HPP A;  2WGS A;  2D3A A;  4RF8 A;  1P52 A;  3LVW A;  4BHL A;  4RF9 A;  2GWC A;  2D32 A;  1R8G A;  4GVZ A;  2J1Q A;  2D3B A;  3JU6 A;  1QK1 A;  4LNO A;  2OJW A;  3LN6 A;  1RL9 A;  4RF7 A;  3IG5 A;  3JPZ A;  1F52 A;  1LGR A;  3LVV A; 
#chains in the Genus database with same CATH homology
 3L2E B;  4LNN A;  1FPY A;  4GVY A;  4RF9 A;  4BHL A;  1U6R A;  4AM1 A;  4GVZ A;  1I0E A;  1VRP A;  5J99 A;  3L2E A;  4GW0 A;  3NG0 A;  4BG4 B;  2J1Q A;  1M15 A;  2BVC A;  3DRB A;  1LGR A;  1CRK A;  3JU6 A;  4Q2R A;  1SD0 A;  1BG0 A;  3B6R A;  3M10 A;  4RF6 A;  1F1H A;  1HTO A;  1QK1 A;  4ACF A;  4LNO A;  1QH4 A;  4BG4 A;  4LNK A;  1HTQ A;  3L2D A;  2LGS A;  4LNI A;  4S0R A;  4XYC A;  2CRK A;  2GLS A;  2WHI A;  4GW2 A;  3ZXV A;  1G0W A;  3ZXR A;  1RL9 A;  5J9A A;  4Z9M A;  4HPP A;  4LNF A;  3DRE A;  3JQ3 A;  2WGS A;  4RF7 A;  4S17 A;  4RF8 A;  3JPZ A;  1P50 A;  1F52 A;  1P52 A;  3JU5 A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...