3JPZA

Crystal structure of lombricine kinase
Total Genus 123
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
123
sequence length
364
structure length
364
Chain Sequence
FQNDAKANFPDYANHGCVVGRHLNFEMYQRLFGKKTAHGVTVDKVIQPSVDNFGNCIGLIAGDEESYEVFKELFDAVINEKHKGFGPNDSQPAPDLDASKLVGGQFDEKYVKSCRIRTGRGIRGLCYPPSCTRGERREVERVITTALAGLSGDLSGTYYPLSKMTPEQENQLIADHFLFQKPTGHLMVNSASVRDWPDARGIWHNNEKTFLIWINEEDHMRVISMQKGGNVKAVFERFGRGLNAIAEQMKKNGREYMWNQRLGYLCACPSNLGTGLRASVHVQLHQLSKHPKFEDIVVALQLQKRGTGGEHTAAVDDVYDISNAARLKKSEREFVQLLIDGVKKLIDMEQALEAGKSIDDLIPA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title The structure of lombricine kinase: implications for phosphagen kinase conformational changes.
pubmed doi rcsb
source organism Urechis caupo
molecule tags Transferase
molecule keywords Lombricine kinase
total genus 123
structure length 364
sequence length 364
chains with identical sequence B
ec nomenclature ec 2.7.3.5: Lombricine kinase.
pdb deposition date 2009-09-04

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00217 ATP-gua_Ptrans ATP:guanido phosphotransferase, C-terminal catalytic domain
A PF02807 ATP-gua_PtransN ATP:guanido phosphotransferase, N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.135.10 Mainly Alpha Orthogonal Bundle Transferase Creatine Kinase; Chain A, domain 1 ATP:guanido phosphotransferase, N-terminal domain 3jpzA01
3.30.590.10 Alpha Beta 2-Layer Sandwich Creatine Kinase; Chain A, domain 2 Glutamine synthetase/guanido kinase, catalytic domain 3jpzA02
1G0WA 1RL9A 3B6RA 4RF9A 1F52A 3DREA 4LNIA 3L2DA 4GW2A 4LNKA 4BG4B 3L2EA 3ZXVA 4AM1A 1CRKA 1QH4A 4GVYA 1HTOA 4GVZA 4RF8A 3JU5A 1SD0A 4BG4A 3ZXRA 5J99A 2LGSA 1BG0A 4S17A 1P52A 4LNNA 4ACFA 2GLSA 1F1HA 1P50A 4Z9MA 2WHIA 4LNFA 4BHLA 3DRBA 3JU6A 3JPZA 4HPPA 2WGSA 2CRKA 3NG0A 4XYCA 4S0RA 1I0EA 2BVCA 1HTQA 3JQ3A 4RF6A 1VRPA 4GW0A 3M10A 4RF7A 1LGRA 5J9AA 4Q2RA 4LNOA 1QK1A 2J1QA 1M15A 1U6RA 1FPYA 3L2EB
chains in the Genus database with same CATH superfamily
1RL9A 3B6RA 4BG4B 3L2EA 1VA6A 3LN7A 3ZXVA 1HTOA 2OJWA 5J99A 1BG0A 1F1HA 3DRBA 2GWCA 2QC8A 3LVWA 1VRPA 4GW0A 3M10A 3LVVA 1U6RA 2D3BA 1FPYA 1G0WA 4RF9A 3DREA 4LNIA 4GW2A 1QH4A 4GVYA 4GVZA 3JU5A 1SD0A 4BG4A 4S17A 1P52A 2GLSA 4Z9MA 1V4GA 4BHLA 3FKYA 2WGSA 1R8GA 3NG0A 4S0RA 1HTQA 4RF6A 4RF7A 1LGRA 5J9AA 2D33A 2D3CA 1M15A 3NZTA 1TT4A 2D3AA 4AM1A 2GWDA 3ZXRA 4ACFA 3JPZA 2UU7A 4HPPA 4BAXA 3JQ3A 4LNOA 3L2EB 1F52A 3L2DA 4LNKA 3IG5A 1CRKA 4RF8A 2LGSA 2D32A 4LNNA 2WHIA 1P50A 4LNFA 3JU6A 2CRKA 4XYCA 3IG8A 1I0EA 2BVCA 4Q2RA 1QK1A 2J1QA 3LN6A
chains in the Genus database with same CATH topology
1G0WA 1RL9A 3B6RA 4RF9A 1F52A 3DREA 4LNIA 3L2DA 4GW2A 4LNKA 4BG4B 3L2EA 3ZXVA 4AM1A 1CRKA 1QH4A 4GVYA 1HTOA 4GVZA 4RF8A 3JU5A 1SD0A 4BG4A 3ZXRA 5J99A 2LGSA 1BG0A 4S17A 1P52A 4LNNA 4ACFA 2GLSA 1F1HA 1P50A 4Z9MA 2WHIA 4LNFA 4BHLA 3DRBA 3JU6A 3JPZA 4HPPA 2WGSA 2CRKA 3NG0A 4XYCA 4S0RA 1I0EA 2BVCA 1HTQA 3JQ3A 4RF6A 1VRPA 4GW0A 3M10A 4RF7A 1LGRA 5J9AA 4Q2RA 4LNOA 1QK1A 2J1QA 1M15A 1U6RA 1FPYA 3L2EB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1G0W A;  1RL9 A;  3B6R A;  4RF9 A;  1F52 A;  3DRE A;  4LNI A;  3L2D A;  4GW2 A;  4LNK A;  4BG4 B;  3L2E A;  3ZXV A;  4AM1 A;  1CRK A;  1QH4 A;  4GVY A;  1HTO A;  4GVZ A;  4RF8 A;  3JU5 A;  1SD0 A;  4BG4 A;  3ZXR A;  5J99 A;  2LGS A;  1BG0 A;  4S17 A;  1P52 A;  4LNN A;  4ACF A;  2GLS A;  1F1H A;  1P50 A;  4Z9M A;  2WHI A;  4LNF A;  4BHL A;  3DRB A;  3JU6 A;  3JPZ A;  4HPP A;  2WGS A;  2CRK A;  3NG0 A;  4XYC A;  4S0R A;  1I0E A;  2BVC A;  1HTQ A;  3JQ3 A;  4RF6 A;  1VRP A;  4GW0 A;  3M10 A;  4RF7 A;  1LGR A;  5J9A A;  4Q2R A;  4LNO A;  1QK1 A;  2J1Q A;  1M15 A;  1U6R A;  1FPY A;  3L2E B; 
#chains in the Genus database with same CATH topology
 1RL9 A;  3B6R A;  4BG4 B;  3L2E A;  1VA6 A;  3LN7 A;  3ZXV A;  1HTO A;  2OJW A;  5J99 A;  1BG0 A;  1F1H A;  3DRB A;  2GWC A;  2QC8 A;  3LVW A;  1VRP A;  4GW0 A;  3M10 A;  3LVV A;  1U6R A;  2D3B A;  1FPY A;  1G0W A;  4RF9 A;  3DRE A;  4LNI A;  4GW2 A;  1QH4 A;  4GVY A;  4GVZ A;  3JU5 A;  1SD0 A;  4BG4 A;  4S17 A;  1P52 A;  2GLS A;  4Z9M A;  1V4G A;  4BHL A;  3FKY A;  2WGS A;  1R8G A;  3NG0 A;  4S0R A;  1HTQ A;  4RF6 A;  4RF7 A;  1LGR A;  5J9A A;  2D33 A;  2D3C A;  1M15 A;  3NZT A;  1TT4 A;  2D3A A;  4AM1 A;  2GWD A;  3ZXR A;  4ACF A;  3JPZ A;  2UU7 A;  4HPP A;  4BAX A;  3JQ3 A;  4LNO A;  3L2E B;  1F52 A;  3L2D A;  4LNK A;  3IG5 A;  1CRK A;  4RF8 A;  2LGS A;  2D32 A;  4LNN A;  2WHI A;  1P50 A;  4LNF A;  3JU6 A;  2CRK A;  4XYC A;  3IG8 A;  1I0E A;  2BVC A;  4Q2R A;  1QK1 A;  2J1Q A;  3LN6 A; 
#chains in the Genus database with same CATH homology
 1G0W A;  1RL9 A;  3B6R A;  4RF9 A;  1F52 A;  3DRE A;  4LNI A;  3L2D A;  4GW2 A;  4LNK A;  4BG4 B;  3L2E A;  3ZXV A;  4AM1 A;  1CRK A;  1QH4 A;  4GVY A;  1HTO A;  4GVZ A;  4RF8 A;  3JU5 A;  1SD0 A;  4BG4 A;  3ZXR A;  5J99 A;  2LGS A;  1BG0 A;  4S17 A;  1P52 A;  4LNN A;  4ACF A;  2GLS A;  1F1H A;  1P50 A;  4Z9M A;  2WHI A;  4LNF A;  4BHL A;  3DRB A;  3JU6 A;  3JPZ A;  4HPP A;  2WGS A;  2CRK A;  3NG0 A;  4XYC A;  4S0R A;  1I0E A;  2BVC A;  1HTQ A;  3JQ3 A;  4RF6 A;  1VRP A;  4GW0 A;  3M10 A;  4RF7 A;  1LGR A;  5J9A A;  4Q2R A;  4LNO A;  1QK1 A;  2J1Q A;  1M15 A;  1U6R A;  1FPY A;  3L2E B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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