5J99A

Ambient temperature transition state structure of arginine kinase - crystal 8/form i
Total Genus 133
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
133
sequence length
356
structure length
356
Chain Sequence
VDQATLDKLEAGFKKLQEASDCKSLLKKHLTKDVFDSIKNKKTGMGATLLDVIQSGVENLDSGVGIYAPDAESYRTFGPLFDPIIDDYHGGFKLTDKHPPKQWGDINTLVGLDPAGQFIISTRVRCGRSLQGYPFNPCLTAEQYKEMEEKVSSTLSSMEDELKGTYYPLTGMSKATQQQLIDDHFLFKEGDRFLQTANACRYWPTGRGIFHNDAKTFLVWVNEEDHLRIISMQKGGDLKTVYKRLVTAVDNIESKLPFSHDDRFGFLTFCPTNLGTTMRASVHIQLPKLAKDRKVLEDIASKFNLQVRGTRGEHTESEGGVYDISNKRRLGLTEYQAVREMQDGILEMIKMEKAAA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title The Sampling of Conformational Dynamics in Ambient-Temperature Crystal Structures of Arginine Kinase.
pubmed doi rcsb
source organism Limulus polyphemus
molecule tags Transferase
molecule keywords Arginine kinase
total genus 133
structure length 356
sequence length 356
ec nomenclature ec 2.7.3.3: Arginine kinase.
pdb deposition date 2016-04-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00217 ATP-gua_Ptrans ATP:guanido phosphotransferase, C-terminal catalytic domain
A PF02807 ATP-gua_PtransN ATP:guanido phosphotransferase, N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.135.10 Mainly Alpha Orthogonal Bundle Transferase Creatine Kinase; Chain A, domain 1 ATP:guanido phosphotransferase, N-terminal domain 5j99A01
3.30.590.10 Alpha Beta 2-Layer Sandwich Creatine Kinase; Chain A, domain 2 Glutamine synthetase/guanido kinase, catalytic domain 5j99A02
4AM1A 4HPPA 4ACFA 3JU5A 4S0RA 3ZXVA 4RF9A 1LGRA 3DREA 1P52A 3JU6A 4BG4A 4Q2RA 3DRBA 4LNKA 4RF6A 1SD0A 3B6RA 1U6RA 3ZXRA 1G0WA 1QH4A 1HTQA 4LNOA 1M15A 2LGSA 2BVCA 3L2EA 1BG0A 2WGSA 4S17A 4GW0A 4XYCA 1QK1A 4LNIA 3JPZA 4GVZA 4LNFA 2GLSA 1RL9A 5J99A 4BHLA 1VRPA 1HTOA 3NG0A 3L2DA 1I0EA 2CRKA 3L2EB 1F1HA 2WHIA 1P50A 2J1QA 4BG4B 3M10A 5J9AA 4LNNA 4GVYA 4RF8A 1F52A 1CRKA 4RF7A 1FPYA 4GW2A 3JQ3A 4Z9MA
chains in the Genus database with same CATH superfamily
4AM1A 3IG5A 3LVVA 3JU6A 3LVWA 2GWCA 3B6RA 1G0WA 1R8GA 1TT4A 2OJWA 4XYCA 1V4GA 3JPZA 2GLSA 5J99A 3LN6A 1F1HA 3L2EB 2WHIA 2J1QA 5J9AA 4LNNA 4RF8A 2D3BA 1CRKA 4ACFA 4Z9MA 3JU5A 4S0RA 3ZXVA 4RF9A 1P52A 1VA6A 4Q2RA 4LNKA 2GWDA 1QH4A 1HTQA 2BVCA 2D3CA 4S17A 4LNFA 4BHLA 1VRPA 3L2DA 2CRKA 2UU7A 2QC8A 4HPPA 3DRBA 1SD0A 2D3AA 2LGSA 3L2EA 3NZTA 4GW0A 3LN7A 1QK1A 4LNIA 4GVZA 3FKYA 1HTOA 1I0EA 3M10A 4GVYA 1F52A 4RF7A 2D32A 1FPYA 4GW2A 1LGRA 3DREA 4BG4A 4RF6A 3ZXRA 1U6RA 4LNOA 1M15A 1BG0A 2WGSA 4BAXA 1RL9A 3IG8A 3NG0A 1P50A 4BG4B 2D33A 3JQ3A
chains in the Genus database with same CATH topology
4AM1A 4HPPA 4ACFA 3JU5A 4S0RA 3ZXVA 4RF9A 1LGRA 3DREA 1P52A 3JU6A 4BG4A 4Q2RA 3DRBA 4LNKA 4RF6A 1SD0A 3B6RA 1U6RA 3ZXRA 1G0WA 1QH4A 1HTQA 4LNOA 1M15A 2LGSA 2BVCA 3L2EA 1BG0A 2WGSA 4S17A 4GW0A 4XYCA 1QK1A 4LNIA 3JPZA 4GVZA 4LNFA 2GLSA 1RL9A 5J99A 4BHLA 1VRPA 1HTOA 3NG0A 3L2DA 1I0EA 2CRKA 3L2EB 1F1HA 2WHIA 1P50A 2J1QA 4BG4B 3M10A 5J9AA 4LNNA 4GVYA 4RF8A 1F52A 1CRKA 4RF7A 1FPYA 4GW2A 3JQ3A 4Z9MA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4AM1 A;  4HPP A;  4ACF A;  3JU5 A;  4S0R A;  3ZXV A;  4RF9 A;  1LGR A;  3DRE A;  1P52 A;  3JU6 A;  4BG4 A;  4Q2R A;  3DRB A;  4LNK A;  4RF6 A;  1SD0 A;  3B6R A;  1U6R A;  3ZXR A;  1G0W A;  1QH4 A;  1HTQ A;  4LNO A;  1M15 A;  2LGS A;  2BVC A;  3L2E A;  1BG0 A;  2WGS A;  4S17 A;  4GW0 A;  4XYC A;  1QK1 A;  4LNI A;  3JPZ A;  4GVZ A;  4LNF A;  2GLS A;  1RL9 A;  5J99 A;  4BHL A;  1VRP A;  1HTO A;  3NG0 A;  3L2D A;  1I0E A;  2CRK A;  3L2E B;  1F1H A;  2WHI A;  1P50 A;  2J1Q A;  4BG4 B;  3M10 A;  5J9A A;  4LNN A;  4GVY A;  4RF8 A;  1F52 A;  1CRK A;  4RF7 A;  1FPY A;  4GW2 A;  3JQ3 A;  4Z9M A; 
#chains in the Genus database with same CATH topology
 4AM1 A;  3IG5 A;  3LVV A;  3JU6 A;  3LVW A;  2GWC A;  3B6R A;  1G0W A;  1R8G A;  1TT4 A;  2OJW A;  4XYC A;  1V4G A;  3JPZ A;  2GLS A;  5J99 A;  3LN6 A;  1F1H A;  3L2E B;  2WHI A;  2J1Q A;  5J9A A;  4LNN A;  4RF8 A;  2D3B A;  1CRK A;  4ACF A;  4Z9M A;  3JU5 A;  4S0R A;  3ZXV A;  4RF9 A;  1P52 A;  1VA6 A;  4Q2R A;  4LNK A;  2GWD A;  1QH4 A;  1HTQ A;  2BVC A;  2D3C A;  4S17 A;  4LNF A;  4BHL A;  1VRP A;  3L2D A;  2CRK A;  2UU7 A;  2QC8 A;  4HPP A;  3DRB A;  1SD0 A;  2D3A A;  2LGS A;  3L2E A;  3NZT A;  4GW0 A;  3LN7 A;  1QK1 A;  4LNI A;  4GVZ A;  3FKY A;  1HTO A;  1I0E A;  3M10 A;  4GVY A;  1F52 A;  4RF7 A;  2D32 A;  1FPY A;  4GW2 A;  1LGR A;  3DRE A;  4BG4 A;  4RF6 A;  3ZXR A;  1U6R A;  4LNO A;  1M15 A;  1BG0 A;  2WGS A;  4BAX A;  1RL9 A;  3IG8 A;  3NG0 A;  1P50 A;  4BG4 B;  2D33 A;  3JQ3 A; 
#chains in the Genus database with same CATH homology
 4AM1 A;  4HPP A;  4ACF A;  3JU5 A;  4S0R A;  3ZXV A;  4RF9 A;  1LGR A;  3DRE A;  1P52 A;  3JU6 A;  4BG4 A;  4Q2R A;  3DRB A;  4LNK A;  4RF6 A;  1SD0 A;  3B6R A;  1U6R A;  3ZXR A;  1G0W A;  1QH4 A;  1HTQ A;  4LNO A;  1M15 A;  2LGS A;  2BVC A;  3L2E A;  1BG0 A;  2WGS A;  4S17 A;  4GW0 A;  4XYC A;  1QK1 A;  4LNI A;  3JPZ A;  4GVZ A;  4LNF A;  2GLS A;  1RL9 A;  5J99 A;  4BHL A;  1VRP A;  1HTO A;  3NG0 A;  3L2D A;  1I0E A;  2CRK A;  3L2E B;  1F1H A;  2WHI A;  1P50 A;  2J1Q A;  4BG4 B;  3M10 A;  5J9A A;  4LNN A;  4GVY A;  4RF8 A;  1F52 A;  1CRK A;  4RF7 A;  1FPY A;  4GW2 A;  3JQ3 A;  4Z9M A; 
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similar chains in the Genus database (?% sequence similarity)
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