5J99A

Ambient temperature transition state structure of arginine kinase - crystal 8/form i
Total Genus 133
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
133
sequence length
356
structure length
356
Chain Sequence
b'VDQATLDKLEAGFKKLQEASDCKSLLKKHLTKDVFDSIKNKKTGMGATLLDVIQSGVENLDSGVGIYAPDAESYRTFGPLFDPIIDDYHGGFKLTDKHPPKQWGDINTLVGLDPAGQFIISTRVRCGRSLQGYPFNPCLTAEQYKEMEEKVSSTLSSMEDELKGTYYPLTGMSKATQQQLIDDHFLFKEGDRFLQTANACRYWPTGRGIFHNDAKTFLVWVNEEDHLRIISMQKGGDLKTVYKRLVTAVDNIESKLPFSHDDRFGFLTFCPTNLGTTMRASVHIQLPKLAKDRKVLEDIASKFNLQVRGTRGEHTESEGGVYDISNKRRLGLTEYQAVREMQDGILEMIKMEKAAA'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Arginine kinase
publication title The Sampling of Conformational Dynamics in Ambient-Temperature Crystal Structures of Arginine Kinase.
pubmed doi rcsb
source organism Limulus polyphemus
molecule tags Transferase
total genus 133
structure length 356
sequence length 356
ec nomenclature ec 2.7.3.3: Arginine kinase.
pdb deposition date 2016-04-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00217 ATP-gua_Ptrans ATP:guanido phosphotransferase, C-terminal catalytic domain
A PF02807 ATP-gua_PtransN ATP:guanido phosphotransferase, N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.135.10 Mainly Alpha Orthogonal Bundle Transferase Creatine Kinase; Chain A, domain 1 ATP:guanido phosphotransferase, N-terminal domain 5j99A01
3.30.590.10 Alpha Beta 2-Layer Sandwich Creatine Kinase; Chain A, domain 2 Glutamine synthetase/guanido kinase, catalytic domain 5j99A02
1SD0A 4Q2RA 3DRBA 4LNNA 1F1HA 4GW2A 4GVYA 3JQ3A 2J1QA 1HTOA 4LNIA 4ACFA 4RF7A 3JU6A 4RF9A 1G0WA 3L2DA 1VRPA 3JPZA 4Z9MA 2WGSA 4LNKA 4S17A 4BG4A 1I0EA 3ZXRA 4RF6A 5J99A 2CRKA 1FPYA 1RL9A 4AM1A 1CRKA 3B6RA 4BG4B 3DREA 1QH4A 5J9AA 1P52A 4S0RA 3M10A 4XYCA 2BVCA 3NG0A 4GW0A 3L2EA 1QK1A 4LNFA 1HTQA 4RF8A 1LGRA 4HPPA 1BG0A 4LNOA 3L2EB 1M15A 3ZXVA 1P50A 1U6RA 1F52A 2GLSA 4GVZA 2LGSA 3JU5A 2WHIA 4BHLA
chains in the Genus database with same CATH superfamily
2D3CA 1HTOA 4ACFA 4RF7A 3NZTA 2GWCA 2UU7A 3JPZA 4Z9MA 2WGSA 2D32A 2CRKA 5J9AA 1P52A 2QC8A 3M10A 3NG0A 4GW0A 1QK1A 4RF8A 4HPPA 4LNOA 1M15A 1F52A 2GLSA 1VA6A 4XYCA 3LVWA 4GW2A 3JQ3A 3LVVA 2J1QA 2OJWA 2D33A 4RF9A 3L2DA 3ZXRA 4RF6A 1RL9A 4BG4B 1QH4A 3IG5A 1BG0A 3L2EB 3ZXVA 1U6RA 1TT4A 4LNNA 3DRBA 2D3AA 2GWDA 3FKYA 3JU6A 1G0WA 4LNKA 4S17A 4BG4A 5J99A 1FPYA 4AM1A 1CRKA 3LN7A 4BAXA 2BVCA 4LNFA 1HTQA 1LGRA 1P50A 4BHLA 1SD0A 4Q2RA 2D3BA 1F1HA 4GVYA 3LN6A 4LNIA 3IG8A 1VRPA 1I0EA 1V4GA 3B6RA 3DREA 4S0RA 3L2EA 1R8GA 4GVZA 2LGSA 3JU5A 2WHIA
chains in the Genus database with same CATH topology
1SD0A 4Q2RA 3DRBA 4LNNA 1F1HA 4GW2A 4GVYA 3JQ3A 2J1QA 1HTOA 4LNIA 4ACFA 4RF7A 3JU6A 4RF9A 1G0WA 3L2DA 1VRPA 3JPZA 4Z9MA 2WGSA 4LNKA 4S17A 4BG4A 1I0EA 3ZXRA 4RF6A 5J99A 2CRKA 1FPYA 1RL9A 4AM1A 1CRKA 3B6RA 4BG4B 3DREA 1QH4A 5J9AA 1P52A 4S0RA 3M10A 4XYCA 2BVCA 3NG0A 4GW0A 3L2EA 1QK1A 4LNFA 1HTQA 4RF8A 1LGRA 4HPPA 1BG0A 4LNOA 3L2EB 1M15A 3ZXVA 1P50A 1U6RA 1F52A 2GLSA 4GVZA 2LGSA 3JU5A 2WHIA 4BHLA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1SD0 A;  4Q2R A;  3DRB A;  4LNN A;  1F1H A;  4GW2 A;  4GVY A;  3JQ3 A;  2J1Q A;  1HTO A;  4LNI A;  4ACF A;  4RF7 A;  3JU6 A;  4RF9 A;  1G0W A;  3L2D A;  1VRP A;  3JPZ A;  4Z9M A;  2WGS A;  4LNK A;  4S17 A;  4BG4 A;  1I0E A;  3ZXR A;  4RF6 A;  5J99 A;  2CRK A;  1FPY A;  1RL9 A;  4AM1 A;  1CRK A;  3B6R A;  4BG4 B;  3DRE A;  1QH4 A;  5J9A A;  1P52 A;  4S0R A;  3M10 A;  4XYC A;  2BVC A;  3NG0 A;  4GW0 A;  3L2E A;  1QK1 A;  4LNF A;  1HTQ A;  4RF8 A;  1LGR A;  4HPP A;  1BG0 A;  4LNO A;  3L2E B;  1M15 A;  3ZXV A;  1P50 A;  1U6R A;  1F52 A;  2GLS A;  4GVZ A;  2LGS A;  3JU5 A;  2WHI A;  4BHL A; 
#chains in the Genus database with same CATH topology
 2D3C A;  1HTO A;  4ACF A;  4RF7 A;  3NZT A;  2GWC A;  2UU7 A;  3JPZ A;  4Z9M A;  2WGS A;  2D32 A;  2CRK A;  5J9A A;  1P52 A;  2QC8 A;  3M10 A;  3NG0 A;  4GW0 A;  1QK1 A;  4RF8 A;  4HPP A;  4LNO A;  1M15 A;  1F52 A;  2GLS A;  1VA6 A;  4XYC A;  3LVW A;  4GW2 A;  3JQ3 A;  3LVV A;  2J1Q A;  2OJW A;  2D33 A;  4RF9 A;  3L2D A;  3ZXR A;  4RF6 A;  1RL9 A;  4BG4 B;  1QH4 A;  3IG5 A;  1BG0 A;  3L2E B;  3ZXV A;  1U6R A;  1TT4 A;  4LNN A;  3DRB A;  2D3A A;  2GWD A;  3FKY A;  3JU6 A;  1G0W A;  4LNK A;  4S17 A;  4BG4 A;  5J99 A;  1FPY A;  4AM1 A;  1CRK A;  3LN7 A;  4BAX A;  2BVC A;  4LNF A;  1HTQ A;  1LGR A;  1P50 A;  4BHL A;  1SD0 A;  4Q2R A;  2D3B A;  1F1H A;  4GVY A;  3LN6 A;  4LNI A;  3IG8 A;  1VRP A;  1I0E A;  1V4G A;  3B6R A;  3DRE A;  4S0R A;  3L2E A;  1R8G A;  4GVZ A;  2LGS A;  3JU5 A;  2WHI A; 
#chains in the Genus database with same CATH homology
 1SD0 A;  4Q2R A;  3DRB A;  4LNN A;  1F1H A;  4GW2 A;  4GVY A;  3JQ3 A;  2J1Q A;  1HTO A;  4LNI A;  4ACF A;  4RF7 A;  3JU6 A;  4RF9 A;  1G0W A;  3L2D A;  1VRP A;  3JPZ A;  4Z9M A;  2WGS A;  4LNK A;  4S17 A;  4BG4 A;  1I0E A;  3ZXR A;  4RF6 A;  5J99 A;  2CRK A;  1FPY A;  1RL9 A;  4AM1 A;  1CRK A;  3B6R A;  4BG4 B;  3DRE A;  1QH4 A;  5J9A A;  1P52 A;  4S0R A;  3M10 A;  4XYC A;  2BVC A;  3NG0 A;  4GW0 A;  3L2E A;  1QK1 A;  4LNF A;  1HTQ A;  4RF8 A;  1LGR A;  4HPP A;  1BG0 A;  4LNO A;  3L2E B;  1M15 A;  3ZXV A;  1P50 A;  1U6R A;  1F52 A;  2GLS A;  4GVZ A;  2LGS A;  3JU5 A;  2WHI A;  4BHL A; 
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similar chains in the Genus database (?% sequence similarity)
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