2J1QA

Crystal structure of trypanosoma cruzi arginine kinase
Total Genus 116
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
116
sequence length
355
structure length
339
Chain Sequence
MASAEVVSKLEAAFAKLQNASDCHSLLKKYLTKEVFDQLKGKQTKMGATLMDVIQSGVENLDSGIGVYAPDAESYTLFAALLDPIIEDYHKGFKPSDKQPPKDSGDLNTFIDVDPDKKYVISTRVRCGRSLEGYPFNPCLKKQQYEEMESRVKGQLESMSGELRGKYYPLTGMTKETQKQLIDDHFLFKEGDRFLQAAHACKFWPTGRGIYHNDAKTFLVWVNEEDHLRIISMQKGGNLKEVFGRLVTAVGVIEEKVKFSRDDRLGFLTFCPTNLGTTIRASVHIKLPRKKLEEVAAKYNLQVRGVYDISNKRRLGLSEYEAVKEMQDGILELIKAEES
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title The Crystal Structure of Trypanosoma Cruzi Arginine Kinase.
pubmed doi rcsb
source organism Trypanosoma cruzi
molecule tags Transferase
molecule keywords ARGININE KINASE
total genus 116
structure length 339
sequence length 355
ec nomenclature ec 2.7.3.3: Arginine kinase.
pdb deposition date 2006-08-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00217 ATP-gua_Ptrans ATP:guanido phosphotransferase, C-terminal catalytic domain
A PF02807 ATP-gua_PtransN ATP:guanido phosphotransferase, N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.135.10 Mainly Alpha Orthogonal Bundle Transferase Creatine Kinase; Chain A, domain 1 ATP:guanido phosphotransferase, N-terminal domain 2j1qA01
3.30.590.10 Alpha Beta 2-Layer Sandwich Creatine Kinase; Chain A, domain 2 Glutamine synthetase/guanido kinase, catalytic domain 2j1qA02
4BHLA 2LGSA 1BG0A 1QH4A 3ZXVA 5J99A 1I0EA 1RL9A 3JPZA 4GVZA 3DRBA 4GVYA 1U6RA 3M10A 4RF8A 3B6RA 2J1QA 4AM1A 1F1HA 4LNFA 3L2DA 4S17A 1CRKA 3JU5A 4LNKA 4BG4A 1P50A 4Z9MA 5J9AA 1SD0A 2GLSA 2WGSA 1VRPA 4GW2A 4S0RA 1M15A 1HTQA 3L2EA 3NG0A 4RF7A 1QK1A 4HPPA 3DREA 4Q2RA 2CRKA 4BG4B 1LGRA 4LNOA 2WHIA 3JQ3A 4XYCA 3ZXRA 3JU6A 4LNIA 4RF9A 3L2EB 1HTOA 4RF6A 1P52A 2BVCA 4ACFA 1G0WA 1FPYA 4LNNA 4GW0A 1F52A
chains in the Genus database with same CATH superfamily
2LGSA 4BAXA 1I0EA 3IG5A 1U6RA 4LNFA 4S17A 1CRKA 2D33A 4LNKA 1P50A 1SD0A 2D3AA 1R8GA 4LNOA 3IG8A 4LNIA 4RF9A 3L2EB 4RF6A 1TT4A 2BVCA 4ACFA 1FPYA 4BHLA 1BG0A 1QH4A 5J99A 3NZTA 4GVZA 2GWCA 3DRBA 3B6RA 2J1QA 1F1HA 1V4GA 1VA6A 2WGSA 2GWDA 1HTQA 3NG0A 4RF7A 1QK1A 4Q2RA 3LVWA 4XYCA 3JQ3A 3LN6A 3ZXRA 4GW0A 2D32A 4GVYA 2D3BA 4RF8A 3L2DA 2D3CA 3LVVA 4BG4A 2GLSA 1VRPA 4GW2A 4S0RA 1M15A 3L2EA 2QC8A 3FKYA 4BG4B 4LNNA 2UU7A 3ZXVA 1RL9A 3JPZA 3M10A 4AM1A 3JU5A 5J9AA 4Z9MA 2OJWA 4HPPA 3DREA 2CRKA 1LGRA 3LN7A 2WHIA 3JU6A 1HTOA 1P52A 1G0WA 1F52A
chains in the Genus database with same CATH topology
4BHLA 2LGSA 1BG0A 1QH4A 3ZXVA 5J99A 1I0EA 1RL9A 3JPZA 4GVZA 3DRBA 4GVYA 1U6RA 3M10A 4RF8A 3B6RA 2J1QA 4AM1A 1F1HA 4LNFA 3L2DA 4S17A 1CRKA 3JU5A 4LNKA 4BG4A 1P50A 4Z9MA 5J9AA 1SD0A 2GLSA 2WGSA 1VRPA 4GW2A 4S0RA 1M15A 1HTQA 3L2EA 3NG0A 4RF7A 1QK1A 4HPPA 3DREA 4Q2RA 2CRKA 4BG4B 1LGRA 4LNOA 2WHIA 3JQ3A 4XYCA 3ZXRA 3JU6A 4LNIA 4RF9A 3L2EB 1HTOA 4RF6A 1P52A 2BVCA 4ACFA 1G0WA 1FPYA 4LNNA 4GW0A 1F52A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4BHL A;  2LGS A;  1BG0 A;  1QH4 A;  3ZXV A;  5J99 A;  1I0E A;  1RL9 A;  3JPZ A;  4GVZ A;  3DRB A;  4GVY A;  1U6R A;  3M10 A;  4RF8 A;  3B6R A;  2J1Q A;  4AM1 A;  1F1H A;  4LNF A;  3L2D A;  4S17 A;  1CRK A;  3JU5 A;  4LNK A;  4BG4 A;  1P50 A;  4Z9M A;  5J9A A;  1SD0 A;  2GLS A;  2WGS A;  1VRP A;  4GW2 A;  4S0R A;  1M15 A;  1HTQ A;  3L2E A;  3NG0 A;  4RF7 A;  1QK1 A;  4HPP A;  3DRE A;  4Q2R A;  2CRK A;  4BG4 B;  1LGR A;  4LNO A;  2WHI A;  3JQ3 A;  4XYC A;  3ZXR A;  3JU6 A;  4LNI A;  4RF9 A;  3L2E B;  1HTO A;  4RF6 A;  1P52 A;  2BVC A;  4ACF A;  1G0W A;  1FPY A;  4LNN A;  4GW0 A;  1F52 A; 
#chains in the Genus database with same CATH topology
 2LGS A;  4BAX A;  1I0E A;  3IG5 A;  1U6R A;  4LNF A;  4S17 A;  1CRK A;  2D33 A;  4LNK A;  1P50 A;  1SD0 A;  2D3A A;  1R8G A;  4LNO A;  3IG8 A;  4LNI A;  4RF9 A;  3L2E B;  4RF6 A;  1TT4 A;  2BVC A;  4ACF A;  1FPY A;  4BHL A;  1BG0 A;  1QH4 A;  5J99 A;  3NZT A;  4GVZ A;  2GWC A;  3DRB A;  3B6R A;  2J1Q A;  1F1H A;  1V4G A;  1VA6 A;  2WGS A;  2GWD A;  1HTQ A;  3NG0 A;  4RF7 A;  1QK1 A;  4Q2R A;  3LVW A;  4XYC A;  3JQ3 A;  3LN6 A;  3ZXR A;  4GW0 A;  2D32 A;  4GVY A;  2D3B A;  4RF8 A;  3L2D A;  2D3C A;  3LVV A;  4BG4 A;  2GLS A;  1VRP A;  4GW2 A;  4S0R A;  1M15 A;  3L2E A;  2QC8 A;  3FKY A;  4BG4 B;  4LNN A;  2UU7 A;  3ZXV A;  1RL9 A;  3JPZ A;  3M10 A;  4AM1 A;  3JU5 A;  5J9A A;  4Z9M A;  2OJW A;  4HPP A;  3DRE A;  2CRK A;  1LGR A;  3LN7 A;  2WHI A;  3JU6 A;  1HTO A;  1P52 A;  1G0W A;  1F52 A; 
#chains in the Genus database with same CATH homology
 4BHL A;  2LGS A;  1BG0 A;  1QH4 A;  3ZXV A;  5J99 A;  1I0E A;  1RL9 A;  3JPZ A;  4GVZ A;  3DRB A;  4GVY A;  1U6R A;  3M10 A;  4RF8 A;  3B6R A;  2J1Q A;  4AM1 A;  1F1H A;  4LNF A;  3L2D A;  4S17 A;  1CRK A;  3JU5 A;  4LNK A;  4BG4 A;  1P50 A;  4Z9M A;  5J9A A;  1SD0 A;  2GLS A;  2WGS A;  1VRP A;  4GW2 A;  4S0R A;  1M15 A;  1HTQ A;  3L2E A;  3NG0 A;  4RF7 A;  1QK1 A;  4HPP A;  3DRE A;  4Q2R A;  2CRK A;  4BG4 B;  1LGR A;  4LNO A;  2WHI A;  3JQ3 A;  4XYC A;  3ZXR A;  3JU6 A;  4LNI A;  4RF9 A;  3L2E B;  1HTO A;  4RF6 A;  1P52 A;  2BVC A;  4ACF A;  1G0W A;  1FPY A;  4LNN A;  4GW0 A;  1F52 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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