3M10A

Substrate-free form of arginine kinase
Total Genus 122
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
122
sequence length
356
structure length
347
Chain Sequence
b'VDQATLDKLEAGFKKLQEASDCKSLLKKHLTKDVFDSIKNKKTGMGATLLDVIQSGVENLDSGVGIYAPDAESYRTFGPLFDPIIDDYHGGFKLTDKHPPKQWGDINTLVGLDPAGQFIISTRVRCGRSLQGYPFNPCLTAEQYKEMEEKVSSTLSSMEDELKGTYYPLTGMSKATQQQLIDDHFLFKEGDRFLQTANACRYWPTGRGIFHNDAKTFLVWVNEEDHLRIISMQKGGDLKTVYKRLVTAVDNIESKLPFSHDDRFGFLTFCPTNLGTTMRASVHIQLPKLAKDRKVLEDIASKFNLQVRGGGVYDISNKRRLGLTEYQAVREMQDGILEMIKMEKAAA'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Arginine kinase
publication title Arginine kinase: joint crystallographic and NMR RDC analyses link substrate-associated motions to intrinsic flexibility.
pubmed doi rcsb
source organism Limulus polyphemus
molecule tags Transferase
total genus 122
structure length 347
sequence length 356
chains with identical sequence B
ec nomenclature ec 2.7.3.3: Arginine kinase.
pdb deposition date 2010-03-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00217 ATP-gua_Ptrans ATP:guanido phosphotransferase, C-terminal catalytic domain
A PF02807 ATP-gua_PtransN ATP:guanido phosphotransferase, N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.135.10 Mainly Alpha Orthogonal Bundle Transferase Creatine Kinase; Chain A, domain 1 ATP:guanido phosphotransferase, N-terminal domain 3m10A01
3.30.590.10 Alpha Beta 2-Layer Sandwich Creatine Kinase; Chain A, domain 2 Glutamine synthetase/guanido kinase, catalytic domain 3m10A02
3JQ3A 3M10A 3B6RA 1FPYA 4LNFA 2CRKA 1M15A 3DRBA 4XYCA 1I0EA 1RL9A 4RF8A 1HTOA 4BHLA 3ZXRA 1LGRA 4LNIA 4Q2RA 1QH4A 2LGSA 1U6RA 3JU6A 1HTQA 4GW2A 1CRKA 1G0WA 1VRPA 3DREA 2GLSA 5J9AA 4GW0A 4LNNA 3JU5A 4GVYA 1BG0A 2BVCA 1P52A 4HPPA 3JPZA 2J1QA 4RF9A 4ACFA 1P50A 3NG0A 4LNKA 2WGSA 4S17A 3L2EA 5J99A 1F52A 4LNOA 3L2EB 2WHIA 1QK1A 4RF7A 4BG4A 4RF6A 4S0RA 4BG4B 1F1HA 4Z9MA 1SD0A 4AM1A 4GVZA 3L2DA 3ZXVA
chains in the Genus database with same CATH superfamily
3JQ3A 3M10A 1FPYA 1RL9A 4RF8A 1HTOA 4BHLA 1V4GA 4Q2RA 2LGSA 1VA6A 2D3CA 4LNNA 2BVCA 4S17A 3L2EA 3LVVA 1F52A 2D33A 1QK1A 3LVWA 4BG4B 1SD0A 3LN7A 4GVZA 4LNFA 3B6RA 1R8GA 2CRKA 1QH4A 1U6RA 3JU6A 1HTQA 4GW2A 4GW0A 4GVYA 4HPPA 4RF9A 4ACFA 3NG0A 2WGSA 5J99A 4BG4A 4RF6A 2QC8A 4LNOA 3IG5A 3ZXVA 1M15A 2UU7A 1CRKA 1VRPA 3DREA 2GLSA 5J9AA 2D3AA 3JU5A 2J1QA 3IG8A 2D32A 2WHIA 1TT4A 2D3BA 3FKYA 4S0RA 4Z9MA 2GWDA 4XYCA 3DRBA 1I0EA 3ZXRA 1LGRA 4LNIA 2OJWA 1G0WA 1BG0A 2GWCA 1P52A 3JPZA 3LN6A 4BAXA 1P50A 4LNKA 3L2EB 3NZTA 4RF7A 1F1HA 4AM1A 3L2DA
chains in the Genus database with same CATH topology
3JQ3A 3M10A 3B6RA 1FPYA 4LNFA 2CRKA 1M15A 3DRBA 4XYCA 1I0EA 1RL9A 4RF8A 1HTOA 4BHLA 3ZXRA 1LGRA 4LNIA 4Q2RA 1QH4A 2LGSA 1U6RA 3JU6A 1HTQA 4GW2A 1CRKA 1G0WA 1VRPA 3DREA 2GLSA 5J9AA 4GW0A 4LNNA 3JU5A 4GVYA 1BG0A 2BVCA 1P52A 4HPPA 3JPZA 2J1QA 4RF9A 4ACFA 1P50A 3NG0A 4LNKA 2WGSA 4S17A 3L2EA 5J99A 1F52A 4LNOA 3L2EB 2WHIA 1QK1A 4RF7A 4BG4A 4RF6A 4S0RA 4BG4B 1F1HA 4Z9MA 1SD0A 4AM1A 4GVZA 3L2DA 3ZXVA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3JQ3 A;  3M10 A;  3B6R A;  1FPY A;  4LNF A;  2CRK A;  1M15 A;  3DRB A;  4XYC A;  1I0E A;  1RL9 A;  4RF8 A;  1HTO A;  4BHL A;  3ZXR A;  1LGR A;  4LNI A;  4Q2R A;  1QH4 A;  2LGS A;  1U6R A;  3JU6 A;  1HTQ A;  4GW2 A;  1CRK A;  1G0W A;  1VRP A;  3DRE A;  2GLS A;  5J9A A;  4GW0 A;  4LNN A;  3JU5 A;  4GVY A;  1BG0 A;  2BVC A;  1P52 A;  4HPP A;  3JPZ A;  2J1Q A;  4RF9 A;  4ACF A;  1P50 A;  3NG0 A;  4LNK A;  2WGS A;  4S17 A;  3L2E A;  5J99 A;  1F52 A;  4LNO A;  3L2E B;  2WHI A;  1QK1 A;  4RF7 A;  4BG4 A;  4RF6 A;  4S0R A;  4BG4 B;  1F1H A;  4Z9M A;  1SD0 A;  4AM1 A;  4GVZ A;  3L2D A;  3ZXV A; 
#chains in the Genus database with same CATH topology
 3JQ3 A;  3M10 A;  1FPY A;  1RL9 A;  4RF8 A;  1HTO A;  4BHL A;  1V4G A;  4Q2R A;  2LGS A;  1VA6 A;  2D3C A;  4LNN A;  2BVC A;  4S17 A;  3L2E A;  3LVV A;  1F52 A;  2D33 A;  1QK1 A;  3LVW A;  4BG4 B;  1SD0 A;  3LN7 A;  4GVZ A;  4LNF A;  3B6R A;  1R8G A;  2CRK A;  1QH4 A;  1U6R A;  3JU6 A;  1HTQ A;  4GW2 A;  4GW0 A;  4GVY A;  4HPP A;  4RF9 A;  4ACF A;  3NG0 A;  2WGS A;  5J99 A;  4BG4 A;  4RF6 A;  2QC8 A;  4LNO A;  3IG5 A;  3ZXV A;  1M15 A;  2UU7 A;  1CRK A;  1VRP A;  3DRE A;  2GLS A;  5J9A A;  2D3A A;  3JU5 A;  2J1Q A;  3IG8 A;  2D32 A;  2WHI A;  1TT4 A;  2D3B A;  3FKY A;  4S0R A;  4Z9M A;  2GWD A;  4XYC A;  3DRB A;  1I0E A;  3ZXR A;  1LGR A;  4LNI A;  2OJW A;  1G0W A;  1BG0 A;  2GWC A;  1P52 A;  3JPZ A;  3LN6 A;  4BAX A;  1P50 A;  4LNK A;  3L2E B;  3NZT A;  4RF7 A;  1F1H A;  4AM1 A;  3L2D A; 
#chains in the Genus database with same CATH homology
 3JQ3 A;  3M10 A;  3B6R A;  1FPY A;  4LNF A;  2CRK A;  1M15 A;  3DRB A;  4XYC A;  1I0E A;  1RL9 A;  4RF8 A;  1HTO A;  4BHL A;  3ZXR A;  1LGR A;  4LNI A;  4Q2R A;  1QH4 A;  2LGS A;  1U6R A;  3JU6 A;  1HTQ A;  4GW2 A;  1CRK A;  1G0W A;  1VRP A;  3DRE A;  2GLS A;  5J9A A;  4GW0 A;  4LNN A;  3JU5 A;  4GVY A;  1BG0 A;  2BVC A;  1P52 A;  4HPP A;  3JPZ A;  2J1Q A;  4RF9 A;  4ACF A;  1P50 A;  3NG0 A;  4LNK A;  2WGS A;  4S17 A;  3L2E A;  5J99 A;  1F52 A;  4LNO A;  3L2E B;  2WHI A;  1QK1 A;  4RF7 A;  4BG4 A;  4RF6 A;  4S0R A;  4BG4 B;  1F1H A;  4Z9M A;  1SD0 A;  4AM1 A;  4GVZ A;  3L2D A;  3ZXV A; 
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