3M10A

Substrate-free form of arginine kinase
Total Genus 122
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
122
sequence length
356
structure length
347
Chain Sequence
VDQATLDKLEAGFKKLQEASDCKSLLKKHLTKDVFDSIKNKKTGMGATLLDVIQSGVENLDSGVGIYAPDAESYRTFGPLFDPIIDDYHGGFKLTDKHPPKQWGDINTLVGLDPAGQFIISTRVRCGRSLQGYPFNPCLTAEQYKEMEEKVSSTLSSMEDELKGTYYPLTGMSKATQQQLIDDHFLFKEGDRFLQTANACRYWPTGRGIFHNDAKTFLVWVNEEDHLRIISMQKGGDLKTVYKRLVTAVDNIESKLPFSHDDRFGFLTFCPTNLGTTMRASVHIQLPKLAKDRKVLEDIASKFNLQVRGGGVYDISNKRRLGLTEYQAVREMQDGILEMIKMEKAAA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Arginine kinase: joint crystallographic and NMR RDC analyses link substrate-associated motions to intrinsic flexibility.
pubmed doi rcsb
source organism Limulus polyphemus
molecule tags Transferase
molecule keywords Arginine kinase
total genus 122
structure length 347
sequence length 356
chains with identical sequence B
ec nomenclature ec 2.7.3.3: Arginine kinase.
pdb deposition date 2010-03-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00217 ATP-gua_Ptrans ATP:guanido phosphotransferase, C-terminal catalytic domain
A PF02807 ATP-gua_PtransN ATP:guanido phosphotransferase, N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.135.10 Mainly Alpha Orthogonal Bundle Transferase Creatine Kinase; Chain A, domain 1 ATP:guanido phosphotransferase, N-terminal domain 3m10A01
3.30.590.10 Alpha Beta 2-Layer Sandwich Creatine Kinase; Chain A, domain 2 Glutamine synthetase/guanido kinase, catalytic domain 3m10A02
4S17A 3M10A 2J1QA 4GVYA 3L2EB 4LNOA 4GVZA 4LNKA 2GLSA 4AM1A 4XYCA 1CRKA 1F52A 4HPPA 4LNIA 3JU5A 1BG0A 2BVCA 1I0EA 3B6RA 4BG4B 3L2EA 1P50A 1U6RA 3L2DA 1G0WA 2CRKA 3NG0A 3JPZA 1VRPA 1M15A 4RF6A 1RL9A 2LGSA 4S0RA 4BHLA 1QK1A 4LNFA 5J99A 4GW0A 1FPYA 5J9AA 3DREA 4BG4A 3JQ3A 1SD0A 1LGRA 2WGSA 4RF7A 4ACFA 3DRBA 1HTOA 4Z9MA 4GW2A 4LNNA 2WHIA 1F1HA 4Q2RA 3ZXVA 1HTQA 1QH4A 4RF9A 1P52A 3JU6A 4RF8A 3ZXRA
chains in the Genus database with same CATH superfamily
2D32A 4GVYA 3L2EB 2GLSA 2D3CA 1CRKA 2OJWA 1TT4A 3JPZA 2LGSA 4BHLA 4GW0A 5J9AA 3IG8A 1LGRA 3JQ3A 3ZXVA 1HTQA 4RF9A 3LVWA 2BVCA 3JU6A 3LVVA 3LN7A 4S17A 1R8GA 4LNKA 4XYCA 2GWDA 4LNIA 1I0EA 3B6RA 3IG5A 3LN6A 1V4GA 3L2DA 3NG0A 1M15A 4S0RA 4LNFA 3DREA 2QC8A 4RF7A 1HTOA 4Z9MA 4LNNA 1P52A 2GWCA 2UU7A 4GVZA 4AM1A 1F52A 3JU5A 3FKYA 1U6RA 1G0WA 1VRPA 1RL9A 4ACFA 4BG4A 1SD0A 3DRBA 4GW2A 1F1HA 4Q2RA 2D33A 3M10A 2J1QA 4LNOA 4HPPA 1BG0A 4BAXA 1VA6A 4BG4B 3L2EA 1P50A 2CRKA 4RF6A 1QK1A 2D3AA 5J99A 2D3BA 2WGSA 3NZTA 2WHIA 1QH4A 1FPYA 4RF8A 3ZXRA
chains in the Genus database with same CATH topology
4S17A 3M10A 2J1QA 4GVYA 3L2EB 4LNOA 4GVZA 4LNKA 2GLSA 4AM1A 4XYCA 1CRKA 1F52A 4HPPA 4LNIA 3JU5A 1BG0A 2BVCA 1I0EA 3B6RA 4BG4B 3L2EA 1P50A 1U6RA 3L2DA 1G0WA 2CRKA 3NG0A 3JPZA 1VRPA 1M15A 4RF6A 1RL9A 2LGSA 4S0RA 4BHLA 1QK1A 4LNFA 5J99A 4GW0A 1FPYA 5J9AA 3DREA 4BG4A 3JQ3A 1SD0A 1LGRA 2WGSA 4RF7A 4ACFA 3DRBA 1HTOA 4Z9MA 4GW2A 4LNNA 2WHIA 1F1HA 4Q2RA 3ZXVA 1HTQA 1QH4A 4RF9A 1P52A 3JU6A 4RF8A 3ZXRA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4S17 A;  3M10 A;  2J1Q A;  4GVY A;  3L2E B;  4LNO A;  4GVZ A;  4LNK A;  2GLS A;  4AM1 A;  4XYC A;  1CRK A;  1F52 A;  4HPP A;  4LNI A;  3JU5 A;  1BG0 A;  2BVC A;  1I0E A;  3B6R A;  4BG4 B;  3L2E A;  1P50 A;  1U6R A;  3L2D A;  1G0W A;  2CRK A;  3NG0 A;  3JPZ A;  1VRP A;  1M15 A;  4RF6 A;  1RL9 A;  2LGS A;  4S0R A;  4BHL A;  1QK1 A;  4LNF A;  5J99 A;  4GW0 A;  1FPY A;  5J9A A;  3DRE A;  4BG4 A;  3JQ3 A;  1SD0 A;  1LGR A;  2WGS A;  4RF7 A;  4ACF A;  3DRB A;  1HTO A;  4Z9M A;  4GW2 A;  4LNN A;  2WHI A;  1F1H A;  4Q2R A;  3ZXV A;  1HTQ A;  1QH4 A;  4RF9 A;  1P52 A;  3JU6 A;  4RF8 A;  3ZXR A; 
#chains in the Genus database with same CATH topology
 2D32 A;  4GVY A;  3L2E B;  2GLS A;  2D3C A;  1CRK A;  2OJW A;  1TT4 A;  3JPZ A;  2LGS A;  4BHL A;  4GW0 A;  5J9A A;  3IG8 A;  1LGR A;  3JQ3 A;  3ZXV A;  1HTQ A;  4RF9 A;  3LVW A;  2BVC A;  3JU6 A;  3LVV A;  3LN7 A;  4S17 A;  1R8G A;  4LNK A;  4XYC A;  2GWD A;  4LNI A;  1I0E A;  3B6R A;  3IG5 A;  3LN6 A;  1V4G A;  3L2D A;  3NG0 A;  1M15 A;  4S0R A;  4LNF A;  3DRE A;  2QC8 A;  4RF7 A;  1HTO A;  4Z9M A;  4LNN A;  1P52 A;  2GWC A;  2UU7 A;  4GVZ A;  4AM1 A;  1F52 A;  3JU5 A;  3FKY A;  1U6R A;  1G0W A;  1VRP A;  1RL9 A;  4ACF A;  4BG4 A;  1SD0 A;  3DRB A;  4GW2 A;  1F1H A;  4Q2R A;  2D33 A;  3M10 A;  2J1Q A;  4LNO A;  4HPP A;  1BG0 A;  4BAX A;  1VA6 A;  4BG4 B;  3L2E A;  1P50 A;  2CRK A;  4RF6 A;  1QK1 A;  2D3A A;  5J99 A;  2D3B A;  2WGS A;  3NZT A;  2WHI A;  1QH4 A;  1FPY A;  4RF8 A;  3ZXR A; 
#chains in the Genus database with same CATH homology
 4S17 A;  3M10 A;  2J1Q A;  4GVY A;  3L2E B;  4LNO A;  4GVZ A;  4LNK A;  2GLS A;  4AM1 A;  4XYC A;  1CRK A;  1F52 A;  4HPP A;  4LNI A;  3JU5 A;  1BG0 A;  2BVC A;  1I0E A;  3B6R A;  4BG4 B;  3L2E A;  1P50 A;  1U6R A;  3L2D A;  1G0W A;  2CRK A;  3NG0 A;  3JPZ A;  1VRP A;  1M15 A;  4RF6 A;  1RL9 A;  2LGS A;  4S0R A;  4BHL A;  1QK1 A;  4LNF A;  5J99 A;  4GW0 A;  1FPY A;  5J9A A;  3DRE A;  4BG4 A;  3JQ3 A;  1SD0 A;  1LGR A;  2WGS A;  4RF7 A;  4ACF A;  3DRB A;  1HTO A;  4Z9M A;  4GW2 A;  4LNN A;  2WHI A;  1F1H A;  4Q2R A;  3ZXV A;  1HTQ A;  1QH4 A;  4RF9 A;  1P52 A;  3JU6 A;  4RF8 A;  3ZXR A; 
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