5J9AA

Ambient temperature transition state structure of arginine kinase - crystal 11/form ii
Total Genus 132
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
132
sequence length
356
structure length
356
Chain Sequence
VDQATLDKLEAGFKKLQEASDCKSLLKKHLTKDVFDSIKNKKTGMGATLLDVIQSGVENLDSGVGIYAPDAESYRTFGPLFDPIIDDYHGGFKLTDKHPPKQWGDINTLVGLDPAGQFIISTRVRCGRSLQGYPFNPCLTAEQYKEMEEKVSSTLSSMEDELKGTYYPLTGMSKATQQQLIDDHFLFKEGDRFLQTANACRYWPTGRGIFHNDAKTFLVWVNEEDHLRIISMQKGGDLKTVYKRLVTAVDNIESKLPFSHDDRFGFLTFCPTNLGTTMRASVHIQLPKLAKDRKVLEDIASKFNLQVRGTRGEHTESEGGVYDISNKRRLGLTEYQAVREMQDGILEMIKMEKAAA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title The Sampling of Conformational Dynamics in Ambient-Temperature Crystal Structures of Arginine Kinase.
pubmed doi rcsb
source organism Limulus polyphemus
molecule tags Transferase
molecule keywords Arginine kinase
total genus 132
structure length 356
sequence length 356
ec nomenclature ec 2.7.3.3: Arginine kinase.
pdb deposition date 2016-04-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00217 ATP-gua_Ptrans ATP:guanido phosphotransferase, C-terminal catalytic domain
A PF02807 ATP-gua_PtransN ATP:guanido phosphotransferase, N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.135.10 Mainly Alpha Orthogonal Bundle Transferase Creatine Kinase; Chain A, domain 1 ATP:guanido phosphotransferase, N-terminal domain 5j9aA01
3.30.590.10 Alpha Beta 2-Layer Sandwich Creatine Kinase; Chain A, domain 2 Glutamine synthetase/guanido kinase, catalytic domain 5j9aA02
1QH4A 3L2DA 4RF6A 3DREA 1G0WA 4S0RA 2WGSA 4GW0A 3ZXRA 3L2EB 4RF7A 4GVYA 1LGRA 3B6RA 4BG4A 4GVZA 4RF8A 4GW2A 4LNKA 4LNIA 4LNNA 3L2EA 2CRKA 3JPZA 1F52A 4BG4B 1HTOA 3DRBA 3JU6A 5J9AA 2LGSA 4Z9MA 1HTQA 4ACFA 2J1QA 1P52A 1QK1A 5J99A 1U6RA 4LNOA 1F1HA 1CRKA 2BVCA 1RL9A 4LNFA 4RF9A 3ZXVA 1P50A 4S17A 4HPPA 1FPYA 4Q2RA 1SD0A 3JU5A 1M15A 2WHIA 1I0EA 3JQ3A 2GLSA 3M10A 3NG0A 4AM1A 4BHLA 4XYCA 1BG0A 1VRPA
chains in the Genus database with same CATH superfamily
3DREA 4RF7A 4GVYA 3LN6A 4LNIA 4LNNA 1R8GA 4BG4B 3JU6A 1HTQA 1U6RA 3IG8A 3FKYA 1P50A 3JU5A 2GLSA 3NG0A 4XYCA 4LNKA 1VRPA 4RF6A 1G0WA 3ZXRA 1LGRA 3B6RA 4BG4A 4GW2A 1V4GA 1F52A 1HTOA 3DRBA 2LGSA 4Z9MA 4LNOA 4LNFA 2D3BA 3ZXVA 4S17A 2UU7A 2D3AA 1M15A 1I0EA 3M10A 2GWCA 3LN7A 2D33A 2WGSA 4GW0A 4GVZA 2QC8A 1TT4A 3JPZA 3LVVA 2GWDA 2J1QA 1QK1A 5J99A 1CRKA 2BVCA 4HPPA 4Q2RA 2D32A 3JQ3A 2OJWA 1QH4A 3L2DA 4S0RA 3L2EB 4RF8A 3IG5A 3L2EA 2CRKA 5J9AA 2D3CA 3LVWA 1VA6A 3NZTA 4AM1A 4ACFA 1P52A 1F1HA 4BAXA 1RL9A 4RF9A 1SD0A 2WHIA 1FPYA 4BHLA 1BG0A
chains in the Genus database with same CATH topology
1QH4A 3L2DA 4RF6A 3DREA 1G0WA 4S0RA 2WGSA 4GW0A 3ZXRA 3L2EB 4RF7A 4GVYA 1LGRA 3B6RA 4BG4A 4GVZA 4RF8A 4GW2A 4LNKA 4LNIA 4LNNA 3L2EA 2CRKA 3JPZA 1F52A 4BG4B 1HTOA 3DRBA 3JU6A 5J9AA 2LGSA 4Z9MA 1HTQA 4ACFA 2J1QA 1P52A 1QK1A 5J99A 1U6RA 4LNOA 1F1HA 1CRKA 2BVCA 1RL9A 4LNFA 4RF9A 3ZXVA 1P50A 4S17A 4HPPA 1FPYA 4Q2RA 1SD0A 3JU5A 1M15A 2WHIA 1I0EA 3JQ3A 2GLSA 3M10A 3NG0A 4AM1A 4BHLA 4XYCA 1BG0A 1VRPA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1QH4 A;  3L2D A;  4RF6 A;  3DRE A;  1G0W A;  4S0R A;  2WGS A;  4GW0 A;  3ZXR A;  3L2E B;  4RF7 A;  4GVY A;  1LGR A;  3B6R A;  4BG4 A;  4GVZ A;  4RF8 A;  4GW2 A;  4LNK A;  4LNI A;  4LNN A;  3L2E A;  2CRK A;  3JPZ A;  1F52 A;  4BG4 B;  1HTO A;  3DRB A;  3JU6 A;  5J9A A;  2LGS A;  4Z9M A;  1HTQ A;  4ACF A;  2J1Q A;  1P52 A;  1QK1 A;  5J99 A;  1U6R A;  4LNO A;  1F1H A;  1CRK A;  2BVC A;  1RL9 A;  4LNF A;  4RF9 A;  3ZXV A;  1P50 A;  4S17 A;  4HPP A;  1FPY A;  4Q2R A;  1SD0 A;  3JU5 A;  1M15 A;  2WHI A;  1I0E A;  3JQ3 A;  2GLS A;  3M10 A;  3NG0 A;  4AM1 A;  4BHL A;  4XYC A;  1BG0 A;  1VRP A; 
#chains in the Genus database with same CATH topology
 3DRE A;  4RF7 A;  4GVY A;  3LN6 A;  4LNI A;  4LNN A;  1R8G A;  4BG4 B;  3JU6 A;  1HTQ A;  1U6R A;  3IG8 A;  3FKY A;  1P50 A;  3JU5 A;  2GLS A;  3NG0 A;  4XYC A;  4LNK A;  1VRP A;  4RF6 A;  1G0W A;  3ZXR A;  1LGR A;  3B6R A;  4BG4 A;  4GW2 A;  1V4G A;  1F52 A;  1HTO A;  3DRB A;  2LGS A;  4Z9M A;  4LNO A;  4LNF A;  2D3B A;  3ZXV A;  4S17 A;  2UU7 A;  2D3A A;  1M15 A;  1I0E A;  3M10 A;  2GWC A;  3LN7 A;  2D33 A;  2WGS A;  4GW0 A;  4GVZ A;  2QC8 A;  1TT4 A;  3JPZ A;  3LVV A;  2GWD A;  2J1Q A;  1QK1 A;  5J99 A;  1CRK A;  2BVC A;  4HPP A;  4Q2R A;  2D32 A;  3JQ3 A;  2OJW A;  1QH4 A;  3L2D A;  4S0R A;  3L2E B;  4RF8 A;  3IG5 A;  3L2E A;  2CRK A;  5J9A A;  2D3C A;  3LVW A;  1VA6 A;  3NZT A;  4AM1 A;  4ACF A;  1P52 A;  1F1H A;  4BAX A;  1RL9 A;  4RF9 A;  1SD0 A;  2WHI A;  1FPY A;  4BHL A;  1BG0 A; 
#chains in the Genus database with same CATH homology
 1QH4 A;  3L2D A;  4RF6 A;  3DRE A;  1G0W A;  4S0R A;  2WGS A;  4GW0 A;  3ZXR A;  3L2E B;  4RF7 A;  4GVY A;  1LGR A;  3B6R A;  4BG4 A;  4GVZ A;  4RF8 A;  4GW2 A;  4LNK A;  4LNI A;  4LNN A;  3L2E A;  2CRK A;  3JPZ A;  1F52 A;  4BG4 B;  1HTO A;  3DRB A;  3JU6 A;  5J9A A;  2LGS A;  4Z9M A;  1HTQ A;  4ACF A;  2J1Q A;  1P52 A;  1QK1 A;  5J99 A;  1U6R A;  4LNO A;  1F1H A;  1CRK A;  2BVC A;  1RL9 A;  4LNF A;  4RF9 A;  3ZXV A;  1P50 A;  4S17 A;  4HPP A;  1FPY A;  4Q2R A;  1SD0 A;  3JU5 A;  1M15 A;  2WHI A;  1I0E A;  3JQ3 A;  2GLS A;  3M10 A;  3NG0 A;  4AM1 A;  4BHL A;  4XYC A;  1BG0 A;  1VRP A; 
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similar chains in the Genus database (?% sequence similarity)
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