4GW2A

Crystal structure of arginine kinase in complex with l-ornithine, mgadp, and nitrate.
Total Genus 128
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
128
sequence length
356
structure length
356
Chain Sequence
VDQATLDKLEAGFKKLQEASDCKSLLKKHLTKDVFDSIKNKKTGMGATLLDVIQSGVENLDSGVGIYAPDAESYRTFGPLFDPIIDDYHGGFKLTDKHPPKQWGDINTLVGLDPAGQFIISTRVRCGRSLQGYPFNPCLTAEQYKEMEEKVSSTLSSMEDELKGTYYPLTGMSKATQQQLIDDHFLFKEGDRFLQTANACRYWPTGRGIFHNDAKTFLVWVNEEDHLRIISMQKGGDLKTVYKRLVTAVDNIESKLPFSHDDRFGFLTFCPTNLGTTMRASVHIQLPKLAKDRKVLEDIASKFNLQVRGTRGEHTESEGGVYDISNKRRLGLTEYQAVREMQDGILEMIKMEKAAAA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structures of arginine kinase in complex with ADP, nitrate, and various phosphagen analogs.
pubmed doi rcsb
source organism Limulus polyphemus
molecule tags Transferase
molecule keywords Arginine kinase
total genus 128
structure length 356
sequence length 356
ec nomenclature ec 2.7.3.3: Arginine kinase.
pdb deposition date 2012-08-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00217 ATP-gua_Ptrans ATP:guanido phosphotransferase, C-terminal catalytic domain
A PF02807 ATP-gua_PtransN ATP:guanido phosphotransferase, N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.135.10 Mainly Alpha Orthogonal Bundle Transferase Creatine Kinase; Chain A, domain 1 ATP:guanido phosphotransferase, N-terminal domain 4gw2A01
3.30.590.10 Alpha Beta 2-Layer Sandwich Creatine Kinase; Chain A, domain 2 Glutamine synthetase/guanido kinase, catalytic domain 4gw2A02
3DRBA 4AM1A 4LNNA 1F52A 1VRPA 2GLSA 1SD0A 4XYCA 1LGRA 1CRKA 2BVCA 3JU5A 4S0RA 4RF9A 1U6RA 4Q2RA 1G0WA 4BHLA 3ZXVA 1RL9A 1P52A 1HTOA 3JQ3A 1M15A 5J99A 2LGSA 4LNFA 4GVYA 4LNKA 4S17A 4ACFA 1QK1A 1I0EA 2CRKA 4GVZA 4RF7A 4HPPA 3JPZA 4RF6A 1QH4A 4RF8A 4GW2A 3JU6A 4Z9MA 3ZXRA 5J9AA 2WGSA 1P50A 4BG4A 1HTQA 1BG0A 3L2EA 4LNOA 3NG0A 3L2DA 2J1QA 3B6RA 3L2EB 4GW0A 4BG4B 2WHIA 3M10A 1F1HA 4LNIA 3DREA 1FPYA
chains in the Genus database with same CATH superfamily
4AM1A 1SD0A 1G0WA 3ZXVA 1RL9A 4LNFA 4LNKA 4RF6A 4BG4A 3L2EA 2WHIA 3LVWA 1VRPA 1LGRA 1CRKA 2BVCA 3JU5A 1VA6A 4RF9A 2D3CA 5J99A 1I0EA 4RF7A 1V4GA 2D3BA 3JPZA 3JU6A 3ZXRA 5J9AA 3LN7A 3LN6A 1HTQA 3NG0A 2J1QA 3B6RA 4GW0A 4BG4B 1TT4A 1F1HA 2UU7A 3DRBA 2D3AA 1F52A 2GWCA 4XYCA 1U6RA 4BHLA 1HTOA 3JQ3A 2D32A 4GVYA 4S17A 2CRKA 4RF8A 2OJWA 2D33A 4LNIA 3DREA 4LNNA 2GLSA 4S0RA 4Q2RA 2GWDA 3FKYA 3IG8A 1P52A 3NZTA 1M15A 1R8GA 2LGSA 3IG5A 4ACFA 1QK1A 4GVZA 4HPPA 1QH4A 4GW2A 4Z9MA 2WGSA 1P50A 4BAXA 1BG0A 4LNOA 3L2DA 3L2EB 2QC8A 3M10A 3LVVA 1FPYA
chains in the Genus database with same CATH topology
3DRBA 4AM1A 4LNNA 1F52A 1VRPA 2GLSA 1SD0A 4XYCA 1LGRA 1CRKA 2BVCA 3JU5A 4S0RA 4RF9A 1U6RA 4Q2RA 1G0WA 4BHLA 3ZXVA 1RL9A 1P52A 1HTOA 3JQ3A 1M15A 5J99A 2LGSA 4LNFA 4GVYA 4LNKA 4S17A 4ACFA 1QK1A 1I0EA 2CRKA 4GVZA 4RF7A 4HPPA 3JPZA 4RF6A 1QH4A 4RF8A 4GW2A 3JU6A 4Z9MA 3ZXRA 5J9AA 2WGSA 1P50A 4BG4A 1HTQA 1BG0A 3L2EA 4LNOA 3NG0A 3L2DA 2J1QA 3B6RA 3L2EB 4GW0A 4BG4B 2WHIA 3M10A 1F1HA 4LNIA 3DREA 1FPYA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3DRB A;  4AM1 A;  4LNN A;  1F52 A;  1VRP A;  2GLS A;  1SD0 A;  4XYC A;  1LGR A;  1CRK A;  2BVC A;  3JU5 A;  4S0R A;  4RF9 A;  1U6R A;  4Q2R A;  1G0W A;  4BHL A;  3ZXV A;  1RL9 A;  1P52 A;  1HTO A;  3JQ3 A;  1M15 A;  5J99 A;  2LGS A;  4LNF A;  4GVY A;  4LNK A;  4S17 A;  4ACF A;  1QK1 A;  1I0E A;  2CRK A;  4GVZ A;  4RF7 A;  4HPP A;  3JPZ A;  4RF6 A;  1QH4 A;  4RF8 A;  4GW2 A;  3JU6 A;  4Z9M A;  3ZXR A;  5J9A A;  2WGS A;  1P50 A;  4BG4 A;  1HTQ A;  1BG0 A;  3L2E A;  4LNO A;  3NG0 A;  3L2D A;  2J1Q A;  3B6R A;  3L2E B;  4GW0 A;  4BG4 B;  2WHI A;  3M10 A;  1F1H A;  4LNI A;  3DRE A;  1FPY A; 
#chains in the Genus database with same CATH topology
 4AM1 A;  1SD0 A;  1G0W A;  3ZXV A;  1RL9 A;  4LNF A;  4LNK A;  4RF6 A;  4BG4 A;  3L2E A;  2WHI A;  3LVW A;  1VRP A;  1LGR A;  1CRK A;  2BVC A;  3JU5 A;  1VA6 A;  4RF9 A;  2D3C A;  5J99 A;  1I0E A;  4RF7 A;  1V4G A;  2D3B A;  3JPZ A;  3JU6 A;  3ZXR A;  5J9A A;  3LN7 A;  3LN6 A;  1HTQ A;  3NG0 A;  2J1Q A;  3B6R A;  4GW0 A;  4BG4 B;  1TT4 A;  1F1H A;  2UU7 A;  3DRB A;  2D3A A;  1F52 A;  2GWC A;  4XYC A;  1U6R A;  4BHL A;  1HTO A;  3JQ3 A;  2D32 A;  4GVY A;  4S17 A;  2CRK A;  4RF8 A;  2OJW A;  2D33 A;  4LNI A;  3DRE A;  4LNN A;  2GLS A;  4S0R A;  4Q2R A;  2GWD A;  3FKY A;  3IG8 A;  1P52 A;  3NZT A;  1M15 A;  1R8G A;  2LGS A;  3IG5 A;  4ACF A;  1QK1 A;  4GVZ A;  4HPP A;  1QH4 A;  4GW2 A;  4Z9M A;  2WGS A;  1P50 A;  4BAX A;  1BG0 A;  4LNO A;  3L2D A;  3L2E B;  2QC8 A;  3M10 A;  3LVV A;  1FPY A; 
#chains in the Genus database with same CATH homology
 3DRB A;  4AM1 A;  4LNN A;  1F52 A;  1VRP A;  2GLS A;  1SD0 A;  4XYC A;  1LGR A;  1CRK A;  2BVC A;  3JU5 A;  4S0R A;  4RF9 A;  1U6R A;  4Q2R A;  1G0W A;  4BHL A;  3ZXV A;  1RL9 A;  1P52 A;  1HTO A;  3JQ3 A;  1M15 A;  5J99 A;  2LGS A;  4LNF A;  4GVY A;  4LNK A;  4S17 A;  4ACF A;  1QK1 A;  1I0E A;  2CRK A;  4GVZ A;  4RF7 A;  4HPP A;  3JPZ A;  4RF6 A;  1QH4 A;  4RF8 A;  4GW2 A;  3JU6 A;  4Z9M A;  3ZXR A;  5J9A A;  2WGS A;  1P50 A;  4BG4 A;  1HTQ A;  1BG0 A;  3L2E A;  4LNO A;  3NG0 A;  3L2D A;  2J1Q A;  3B6R A;  3L2E B;  4GW0 A;  4BG4 B;  2WHI A;  3M10 A;  1F1H A;  4LNI A;  3DRE A;  1FPY A; 
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