1M15A

Transition state structure of arginine kinase
Total Genus 132
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
132
sequence length
356
structure length
356
Chain Sequence
b'VDQATLDKLEAGFKKLQEASDCKSLLKKHLTKDVFDSIKNKKTGMGATLLDVIQSGVENLDSGVGIYAPDAESYRTFGPLFDPIIDDYHGGFKLTDKHPPKQWGDINTLVGLDPAGQFIISTRVRCGRSLQGYPFNPCLTAEQYKEMEEKVSSTLSSMEDELKGTYYPLTGMSKATQQQLIDDHFLFKEGDRFLQTANACRYWPTGRGIFHNDAKTFLVWVNEEDHLRIISMQKGGDLKTVYKRLVTAVDNIESKLPFSHDDRFGFLTFCPTNLGTTMRASVHIQLPKLAKDRKVLEDIASKFNLQVRGTRGEHTESEGGVYDISNKRRLGLTEYQAVREMQDGILEMIKMEKAAA'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords arginine kinase
publication title Refinement of the arginine kinase transition-state analogue complex at 1.2 A resolution: mechanistic insights.
pubmed doi rcsb
source organism Limulus polyphemus
molecule tags Transferase
total genus 132
structure length 356
sequence length 356
ec nomenclature ec 2.7.3.3: Arginine kinase.
pdb deposition date 2002-06-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00217 ATP-gua_Ptrans ATP:guanido phosphotransferase, C-terminal catalytic domain
A PF02807 ATP-gua_PtransN ATP:guanido phosphotransferase, N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.135.10 Mainly Alpha Orthogonal Bundle Transferase Creatine Kinase; Chain A, domain 1 ATP:guanido phosphotransferase, N-terminal domain 1m15A01
3.30.590.10 Alpha Beta 2-Layer Sandwich Creatine Kinase; Chain A, domain 2 Glutamine synthetase/guanido kinase, catalytic domain 1m15A02
1HTQA 2WHIA 3JU6A 4ACFA 4GVZA 4RF7A 3L2DA 5J9AA 2GLSA 4AM1A 1SD0A 3ZXRA 1VRPA 4LNIA 3JU5A 1P52A 1F52A 2J1QA 4Q2RA 2CRKA 3DREA 1F1HA 4GW0A 4GVYA 1LGRA 3JQ3A 4LNKA 3L2EB 4BG4B 1QK1A 4LNFA 1P50A 1U6RA 4RF9A 4S17A 1CRKA 3NG0A 2WGSA 1BG0A 1RL9A 4RF8A 5J99A 4BG4A 3JPZA 2BVCA 4LNOA 1QH4A 4BHLA 4S0RA 3L2EA 3ZXVA 3M10A 3DRBA 4GW2A 4Z9MA 1M15A 1I0EA 1HTOA 4XYCA 4HPPA 4LNNA 1FPYA 1G0WA 3B6RA 4RF6A 2LGSA
chains in the Genus database with same CATH superfamily
3FKYA 4RF7A 2GLSA 1VRPA 2UU7A 3JU5A 1F52A 4GVYA 3JQ3A 2OJWA 4RF8A 2BVCA 1QH4A 4BHLA 3L2EA 3DRBA 1M15A 1HTOA 1FPYA 1G0WA 1V4GA 4BAXA 2D3CA 4ACFA 3L2DA 5J9AA 3ZXRA 4LNIA 1R8GA 2GWDA 4LNKA 1QK1A 1P50A 4RF9A 3NG0A 4S0RA 2D3BA 3M10A 3LVWA 4Z9MA 4HPPA 2LGSA 3IG5A 1HTQA 2D3AA 2QC8A 2D32A 4AM1A 1P52A 2J1QA 4Q2RA 2CRKA 3DREA 1LGRA 4GW0A 3LN6A 4BG4B 3NZTA 1U6RA 4S17A 1BG0A 1VA6A 4BG4A 3ZXVA 4GW2A 3IG8A 1I0EA 4XYCA 2GWCA 3B6RA 4RF6A 2D33A 2WHIA 3JU6A 4GVZA 1SD0A 1F1HA 3L2EB 4LNFA 3LVVA 1CRKA 2WGSA 1RL9A 5J99A 3JPZA 4LNOA 1TT4A 3LN7A 4LNNA
chains in the Genus database with same CATH topology
1HTQA 2WHIA 3JU6A 4ACFA 4GVZA 4RF7A 3L2DA 5J9AA 2GLSA 4AM1A 1SD0A 3ZXRA 1VRPA 4LNIA 3JU5A 1P52A 1F52A 2J1QA 4Q2RA 2CRKA 3DREA 1F1HA 4GW0A 4GVYA 1LGRA 3JQ3A 4LNKA 3L2EB 4BG4B 1QK1A 4LNFA 1P50A 1U6RA 4RF9A 4S17A 1CRKA 3NG0A 2WGSA 1BG0A 1RL9A 4RF8A 5J99A 4BG4A 3JPZA 2BVCA 4LNOA 1QH4A 4BHLA 4S0RA 3L2EA 3ZXVA 3M10A 3DRBA 4GW2A 4Z9MA 1M15A 1I0EA 1HTOA 4XYCA 4HPPA 4LNNA 1FPYA 1G0WA 3B6RA 4RF6A 2LGSA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1HTQ A;  2WHI A;  3JU6 A;  4ACF A;  4GVZ A;  4RF7 A;  3L2D A;  5J9A A;  2GLS A;  4AM1 A;  1SD0 A;  3ZXR A;  1VRP A;  4LNI A;  3JU5 A;  1P52 A;  1F52 A;  2J1Q A;  4Q2R A;  2CRK A;  3DRE A;  1F1H A;  4GW0 A;  4GVY A;  1LGR A;  3JQ3 A;  4LNK A;  3L2E B;  4BG4 B;  1QK1 A;  4LNF A;  1P50 A;  1U6R A;  4RF9 A;  4S17 A;  1CRK A;  3NG0 A;  2WGS A;  1BG0 A;  1RL9 A;  4RF8 A;  5J99 A;  4BG4 A;  3JPZ A;  2BVC A;  4LNO A;  1QH4 A;  4BHL A;  4S0R A;  3L2E A;  3ZXV A;  3M10 A;  3DRB A;  4GW2 A;  4Z9M A;  1M15 A;  1I0E A;  1HTO A;  4XYC A;  4HPP A;  4LNN A;  1FPY A;  1G0W A;  3B6R A;  4RF6 A;  2LGS A; 
#chains in the Genus database with same CATH topology
 3FKY A;  4RF7 A;  2GLS A;  1VRP A;  2UU7 A;  3JU5 A;  1F52 A;  4GVY A;  3JQ3 A;  2OJW A;  4RF8 A;  2BVC A;  1QH4 A;  4BHL A;  3L2E A;  3DRB A;  1M15 A;  1HTO A;  1FPY A;  1G0W A;  1V4G A;  4BAX A;  2D3C A;  4ACF A;  3L2D A;  5J9A A;  3ZXR A;  4LNI A;  1R8G A;  2GWD A;  4LNK A;  1QK1 A;  1P50 A;  4RF9 A;  3NG0 A;  4S0R A;  2D3B A;  3M10 A;  3LVW A;  4Z9M A;  4HPP A;  2LGS A;  3IG5 A;  1HTQ A;  2D3A A;  2QC8 A;  2D32 A;  4AM1 A;  1P52 A;  2J1Q A;  4Q2R A;  2CRK A;  3DRE A;  1LGR A;  4GW0 A;  3LN6 A;  4BG4 B;  3NZT A;  1U6R A;  4S17 A;  1BG0 A;  1VA6 A;  4BG4 A;  3ZXV A;  4GW2 A;  3IG8 A;  1I0E A;  4XYC A;  2GWC A;  3B6R A;  4RF6 A;  2D33 A;  2WHI A;  3JU6 A;  4GVZ A;  1SD0 A;  1F1H A;  3L2E B;  4LNF A;  3LVV A;  1CRK A;  2WGS A;  1RL9 A;  5J99 A;  3JPZ A;  4LNO A;  1TT4 A;  3LN7 A;  4LNN A; 
#chains in the Genus database with same CATH homology
 1HTQ A;  2WHI A;  3JU6 A;  4ACF A;  4GVZ A;  4RF7 A;  3L2D A;  5J9A A;  2GLS A;  4AM1 A;  1SD0 A;  3ZXR A;  1VRP A;  4LNI A;  3JU5 A;  1P52 A;  1F52 A;  2J1Q A;  4Q2R A;  2CRK A;  3DRE A;  1F1H A;  4GW0 A;  4GVY A;  1LGR A;  3JQ3 A;  4LNK A;  3L2E B;  4BG4 B;  1QK1 A;  4LNF A;  1P50 A;  1U6R A;  4RF9 A;  4S17 A;  1CRK A;  3NG0 A;  2WGS A;  1BG0 A;  1RL9 A;  4RF8 A;  5J99 A;  4BG4 A;  3JPZ A;  2BVC A;  4LNO A;  1QH4 A;  4BHL A;  4S0R A;  3L2E A;  3ZXV A;  3M10 A;  3DRB A;  4GW2 A;  4Z9M A;  1M15 A;  1I0E A;  1HTO A;  4XYC A;  4HPP A;  4LNN A;  1FPY A;  1G0W A;  3B6R A;  4RF6 A;  2LGS A; 
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similar chains in the Genus database (?% sequence similarity)
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