1TT4A

Structure of np459575, a predicted glutathione synthase from salmonella typhimurium
Total Genus 106
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
106
sequence length
366
structure length
354
Chain Sequence
DFHVSEPYTLGIELEMQVINPPGYDLSQDSSTLIDAVKPQLTAGEIKHDITESMLEMATGVCRDIDQAAAQLSAMQHVILQAASEHHLGICGGGTHPFQKWRTLENFGYLIQQATVFGQHVHVGCANGDDAIYLLHGLSHFVPHFIALSAASPYMQGADTRFACARLNIFSAFPDNGPMPWVSNWQEFAGLFRRLSYTTMIDSIKDLHWDIRPSPAFGTVEVRVMDTPLTLDHAINMAGLIQATAHWLLTERPFKPQEQDYLLYKFNRFQACRYGLEGVLTDAYTGDRRRLADDTLRLLDNVTPSARKLGADSAIDALRLQVKKGGNEAQYMREFIADGGSLIGLVQKHCEIWA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structure of NP459575, a predicted glutathione synthase from Salmonella typhimurium
rcsb
molecule tags Structural genomics, unknown function
source organism Salmonella typhimurium
molecule keywords putative cytoplasmic protein
total genus 106
structure length 354
sequence length 366
chains with identical sequence B
ec nomenclature ec 6.3.2.2: Glutamate--cysteine ligase.
pdb deposition date 2004-06-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF04107 GCS2 Glutamate-cysteine ligase family 2(GCS2)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.590.20 Alpha Beta 2-Layer Sandwich Creatine Kinase; Chain A, domain 2 Creatine Kinase; Chain A, domain 2 1tt4A00
2GWCA 2D32A 1V4GA 2GWDA 3NZTA 3LN7A 3LN6A 1R8GA 1TT4A 1VA6A 2D33A
chains in the Genus database with same CATH superfamily
1CRKA 3L2EB 2D3CA 1R8GA 3M10A 4LNOA 4LNNA 3LN6A 1HTQA 4BAXA 4LNKA 4GW0A 2D3AA 4RF7A 4XYCA 1RL9A 4S17A 4RF9A 1BG0A 2GWCA 4BG4A 1SD0A 4LNIA 4RF6A 1F52A 1VA6A 1P52A 2D33A 5J9AA 1QH4A 4GVYA 1F1HA 2D32A 3NZTA 1LGRA 3IG5A 1I0EA 1M15A 1QK1A 2D3BA 3JQ3A 1U6RA 1V4GA 2BVCA 3JPZA 3LN7A 4BG4B 3JU5A 4S0RA 3ZXVA 2LGSA 4AM1A 3ZXRA 1FPYA 1VRPA 2J1QA 1HTOA 4Q2RA 2UU7A 1G0WA 3FKYA 3NG0A 3B6RA 2GWDA 2WGSA 2QC8A 4LNFA 3IG8A 4GVZA 4ACFA 4GW2A 2WHIA 3JU6A 5J99A 3L2EA 3L2DA 3DRBA 3LVWA 4RF8A 4Z9MA 2CRKA 4HPPA 2OJWA 3LVVA 1TT4A 1P50A 3DREA 4BHLA 2GLSA
chains in the Genus database with same CATH topology
2GWCA 2D3CA 1R8GA 3LVWA 1VA6A 2D33A 3LN6A 2UU7A 2D32A 3NZTA 4BAXA 2OJWA 3IG5A 3LVVA 1TT4A 2D3BA 3FKYA 2D3AA 1V4GA 2GWDA 2QC8A 3IG8A 3LN7A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2GWC A;  2D32 A;  1V4G A;  2GWD A;  3NZT A;  3LN7 A;  3LN6 A;  1R8G A;  1TT4 A;  1VA6 A;  2D33 A; 
#chains in the Genus database with same CATH topology
 1CRK A;  3L2E B;  2D3C A;  1R8G A;  3M10 A;  4LNO A;  4LNN A;  3LN6 A;  1HTQ A;  4BAX A;  4LNK A;  4GW0 A;  2D3A A;  4RF7 A;  4XYC A;  1RL9 A;  4S17 A;  4RF9 A;  1BG0 A;  2GWC A;  4BG4 A;  1SD0 A;  4LNI A;  4RF6 A;  1F52 A;  1VA6 A;  1P52 A;  2D33 A;  5J9A A;  1QH4 A;  4GVY A;  1F1H A;  2D32 A;  3NZT A;  1LGR A;  3IG5 A;  1I0E A;  1M15 A;  1QK1 A;  2D3B A;  3JQ3 A;  1U6R A;  1V4G A;  2BVC A;  3JPZ A;  3LN7 A;  4BG4 B;  3JU5 A;  4S0R A;  3ZXV A;  2LGS A;  4AM1 A;  3ZXR A;  1FPY A;  1VRP A;  2J1Q A;  1HTO A;  4Q2R A;  2UU7 A;  1G0W A;  3FKY A;  3NG0 A;  3B6R A;  2GWD A;  2WGS A;  2QC8 A;  4LNF A;  3IG8 A;  4GVZ A;  4ACF A;  4GW2 A;  2WHI A;  3JU6 A;  5J99 A;  3L2E A;  3L2D A;  3DRB A;  3LVW A;  4RF8 A;  4Z9M A;  2CRK A;  4HPP A;  2OJW A;  3LVV A;  1TT4 A;  1P50 A;  3DRE A;  4BHL A;  2GLS A; 
#chains in the Genus database with same CATH homology
 2GWC A;  2D3C A;  1R8G A;  3LVW A;  1VA6 A;  2D33 A;  3LN6 A;  2UU7 A;  2D32 A;  3NZT A;  4BAX A;  2OJW A;  3IG5 A;  3LVV A;  1TT4 A;  2D3B A;  3FKY A;  2D3A A;  1V4G A;  2GWD A;  2QC8 A;  3IG8 A;  3LN7 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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