1TT4A

Structure of np459575, a predicted glutathione synthase from salmonella typhimurium
Total Genus 106
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
106
sequence length
366
structure length
354
Chain Sequence
DFHVSEPYTLGIELEMQVINPPGYDLSQDSSTLIDAVKPQLTAGEIKHDITESMLEMATGVCRDIDQAAAQLSAMQHVILQAASEHHLGICGGGTHPFQKWRTLENFGYLIQQATVFGQHVHVGCANGDDAIYLLHGLSHFVPHFIALSAASPYMQGADTRFACARLNIFSAFPDNGPMPWVSNWQEFAGLFRRLSYTTMIDSIKDLHWDIRPSPAFGTVEVRVMDTPLTLDHAINMAGLIQATAHWLLTERPFKPQEQDYLLYKFNRFQACRYGLEGVLTDAYTGDRRRLADDTLRLLDNVTPSARKLGADSAIDALRLQVKKGGNEAQYMREFIADGGSLIGLVQKHCEIWA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structure of NP459575, a predicted glutathione synthase from Salmonella typhimurium
rcsb
source organism Salmonella typhimurium
molecule tags Structural genomics, unknown function
molecule keywords putative cytoplasmic protein
total genus 106
structure length 354
sequence length 366
chains with identical sequence B
ec nomenclature ec 6.3.2.2: Glutamate--cysteine ligase.
pdb deposition date 2004-06-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF04107 GCS2 Glutamate-cysteine ligase family 2(GCS2)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.590.20 Alpha Beta 2-Layer Sandwich Creatine Kinase; Chain A, domain 2 Creatine Kinase; Chain A, domain 2 1tt4A00
1V4GA 2D33A 3LN6A 2GWDA 3LN7A 1VA6A 3NZTA 1R8GA 2D32A 2GWCA 1TT4A
chains in the Genus database with same CATH superfamily
5J9AA 2D3CA 1LGRA 3DREA 2D3BA 3JQ3A 1U6RA 2GWDA 4BHLA 1FPYA 2UU7A 4GW2A 4BG4A 1I0EA 4ACFA 2LGSA 1VA6A 1R8GA 3IG5A 1P52A 3B6RA 3LVVA 2D33A 3LN7A 4RF7A 4Z9MA 3IG8A 4LNFA 3NG0A 1V4GA 1HTOA 4BG4B 4GVYA 3FKYA 1HTQA 2CRKA 1G0WA 1M15A 4S17A 2OJWA 2WHIA 3L2EA 2D3AA 1VRPA 3JU6A 3ZXRA 1BG0A 3L2DA 4HPPA 2WGSA 3NZTA 4Q2RA 3ZXVA 4LNIA 3LN6A 1P50A 4GVZA 3M10A 2D32A 2GWCA 1CRKA 1SD0A 3DRBA 3L2EB 4S0RA 5J99A 2GLSA 4XYCA 1F1HA 4RF9A 4RF6A 1TT4A 1F52A 2QC8A 4AM1A 4RF8A 4LNNA 3LVWA 4LNOA 2J1QA 1QH4A 1QK1A 3JPZA 4BAXA 4LNKA 1RL9A 4GW0A 2BVCA 3JU5A
chains in the Genus database with same CATH topology
3LVVA 2D33A 3LN7A 2D3CA 2D3BA 1TT4A 2QC8A 2GWDA 3NZTA 2UU7A 3IG8A 3LVWA 1V4GA 3LN6A 3FKYA 2D32A 2GWCA 4BAXA 1VA6A 2OJWA 1R8GA 3IG5A 2D3AA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1V4G A;  2D33 A;  3LN6 A;  2GWD A;  3LN7 A;  1VA6 A;  3NZT A;  1R8G A;  2D32 A;  2GWC A;  1TT4 A; 
#chains in the Genus database with same CATH topology
 5J9A A;  2D3C A;  1LGR A;  3DRE A;  2D3B A;  3JQ3 A;  1U6R A;  2GWD A;  4BHL A;  1FPY A;  2UU7 A;  4GW2 A;  4BG4 A;  1I0E A;  4ACF A;  2LGS A;  1VA6 A;  1R8G A;  3IG5 A;  1P52 A;  3B6R A;  3LVV A;  2D33 A;  3LN7 A;  4RF7 A;  4Z9M A;  3IG8 A;  4LNF A;  3NG0 A;  1V4G A;  1HTO A;  4BG4 B;  4GVY A;  3FKY A;  1HTQ A;  2CRK A;  1G0W A;  1M15 A;  4S17 A;  2OJW A;  2WHI A;  3L2E A;  2D3A A;  1VRP A;  3JU6 A;  3ZXR A;  1BG0 A;  3L2D A;  4HPP A;  2WGS A;  3NZT A;  4Q2R A;  3ZXV A;  4LNI A;  3LN6 A;  1P50 A;  4GVZ A;  3M10 A;  2D32 A;  2GWC A;  1CRK A;  1SD0 A;  3DRB A;  3L2E B;  4S0R A;  5J99 A;  2GLS A;  4XYC A;  1F1H A;  4RF9 A;  4RF6 A;  1TT4 A;  1F52 A;  2QC8 A;  4AM1 A;  4RF8 A;  4LNN A;  3LVW A;  4LNO A;  2J1Q A;  1QH4 A;  1QK1 A;  3JPZ A;  4BAX A;  4LNK A;  1RL9 A;  4GW0 A;  2BVC A;  3JU5 A; 
#chains in the Genus database with same CATH homology
 3LVV A;  2D33 A;  3LN7 A;  2D3C A;  2D3B A;  1TT4 A;  2QC8 A;  2GWD A;  3NZT A;  2UU7 A;  3IG8 A;  3LVW A;  1V4G A;  3LN6 A;  3FKY A;  2D32 A;  2GWC A;  4BAX A;  1VA6 A;  2OJW A;  1R8G A;  3IG5 A;  2D3A A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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