4GVYA

Crystal structure of arginine kinase in complex with l-citrulline and mgadp
Total Genus 129
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
129
sequence length
356
structure length
356
Chain Sequence
b'VDQATLDKLEAGFKKLQEASDCKSLLKKHLTKDVFDSIKNKKTGMGATLLDVIQSGVENLDSGVGIYAPDAESYRTFGPLFDPIIDDYHGGFKLTDKHPPKQWGDINTLVGLDPAGQFIISTRVRCGRSLQGYPFNPCLTAEQYKEMEEKVSSTLSSMEDELKGTYYPLTGMSKATQQQLIDDHFLFKEGDRFLQTANACRYWPTGRGIFHNDAKTFLVWVNEEDHLRIISMQKGGDLKTVYKRLVTAVDNIESKLPFSHDDRFGFLTFCPTNLGTTMRASVHIQLPKLAKDRKVLEDIASKFNLQVRGTRGEHTESEGGVYDISNKRRLGLTEYQAVREMQDGILEMIKMEKAAA'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Arginine kinase
publication title Crystal structures of arginine kinase in complex with ADP, nitrate, and various phosphagen analogs.
pubmed doi rcsb
source organism Limulus polyphemus
molecule tags Transferase
total genus 129
structure length 356
sequence length 356
ec nomenclature ec 2.7.3.3: Arginine kinase.
pdb deposition date 2012-08-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00217 ATP-gua_Ptrans ATP:guanido phosphotransferase, C-terminal catalytic domain
A PF02807 ATP-gua_PtransN ATP:guanido phosphotransferase, N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.135.10 Mainly Alpha Orthogonal Bundle Transferase Creatine Kinase; Chain A, domain 1 ATP:guanido phosphotransferase, N-terminal domain 4gvyA01
3.30.590.10 Alpha Beta 2-Layer Sandwich Creatine Kinase; Chain A, domain 2 Glutamine synthetase/guanido kinase, catalytic domain 4gvyA02
1P50A 4LNIA 4S17A 4GW2A 3DREA 3DRBA 3JPZA 5J9AA 2WGSA 3NG0A 4Z9MA 5J99A 3JU5A 3L2DA 1HTOA 4AM1A 4RF9A 3ZXVA 4S0RA 4BG4B 2WHIA 4ACFA 3L2EB 4BG4A 2J1QA 3L2EA 4RF8A 4RF7A 1CRKA 4GVYA 4XYCA 1HTQA 1LGRA 1QH4A 2LGSA 4GW0A 1G0WA 1F1HA 4GVZA 1FPYA 4Q2RA 4LNOA 4LNNA 3B6RA 3M10A 1RL9A 1SD0A 4RF6A 1I0EA 2GLSA 2CRKA 3JU6A 1P52A 1BG0A 1M15A 4HPPA 3ZXRA 4LNFA 3JQ3A 4LNKA 1F52A 1QK1A 1VRPA 1U6RA 4BHLA 2BVCA
chains in the Genus database with same CATH superfamily
3DRBA 5J9AA 2OJWA 2D3BA 4ACFA 3IG5A 2D3CA 4BG4A 3LN6A 4XYCA 3LN7A 1TT4A 1F1HA 4GVZA 1FPYA 1SD0A 1I0EA 1P52A 2D3AA 3ZXRA 3JQ3A 4LNKA 4BAXA 1F52A 1QK1A 1P50A 4S17A 4GW2A 3DREA 2WGSA 3L2DA 3ZXVA 3L2EB 3NZTA 2J1QA 1VA6A 4RF8A 2QC8A 1HTQA 4Q2RA 4LNNA 1RL9A 4RF6A 2CRKA 3JU6A 4HPPA 1V4GA 4LNIA 3NG0A 4Z9MA 2D33A 5J99A 3JU5A 2GWCA 4BG4B 3FKYA 2UU7A 4RF7A 1CRKA 4GVYA 1LGRA 1QH4A 2LGSA 4GW0A 2GWDA 3LVVA 4LNOA 2GLSA 1BG0A 1M15A 4LNFA 1U6RA 4BHLA 3JPZA 1HTOA 4AM1A 4RF9A 4S0RA 2WHIA 3IG8A 3L2EA 2D32A 1G0WA 1R8GA 3B6RA 3M10A 3LVWA 1VRPA 2BVCA
chains in the Genus database with same CATH topology
1P50A 4LNIA 4S17A 4GW2A 3DREA 3DRBA 3JPZA 5J9AA 2WGSA 3NG0A 4Z9MA 5J99A 3JU5A 3L2DA 1HTOA 4AM1A 4RF9A 3ZXVA 4S0RA 4BG4B 2WHIA 4ACFA 3L2EB 4BG4A 2J1QA 3L2EA 4RF8A 4RF7A 1CRKA 4GVYA 4XYCA 1HTQA 1LGRA 1QH4A 2LGSA 4GW0A 1G0WA 1F1HA 4GVZA 1FPYA 4Q2RA 4LNOA 4LNNA 3B6RA 3M10A 1RL9A 1SD0A 4RF6A 1I0EA 2GLSA 2CRKA 3JU6A 1P52A 1BG0A 1M15A 4HPPA 3ZXRA 4LNFA 3JQ3A 4LNKA 1F52A 1QK1A 1VRPA 1U6RA 4BHLA 2BVCA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1P50 A;  4LNI A;  4S17 A;  4GW2 A;  3DRE A;  3DRB A;  3JPZ A;  5J9A A;  2WGS A;  3NG0 A;  4Z9M A;  5J99 A;  3JU5 A;  3L2D A;  1HTO A;  4AM1 A;  4RF9 A;  3ZXV A;  4S0R A;  4BG4 B;  2WHI A;  4ACF A;  3L2E B;  4BG4 A;  2J1Q A;  3L2E A;  4RF8 A;  4RF7 A;  1CRK A;  4GVY A;  4XYC A;  1HTQ A;  1LGR A;  1QH4 A;  2LGS A;  4GW0 A;  1G0W A;  1F1H A;  4GVZ A;  1FPY A;  4Q2R A;  4LNO A;  4LNN A;  3B6R A;  3M10 A;  1RL9 A;  1SD0 A;  4RF6 A;  1I0E A;  2GLS A;  2CRK A;  3JU6 A;  1P52 A;  1BG0 A;  1M15 A;  4HPP A;  3ZXR A;  4LNF A;  3JQ3 A;  4LNK A;  1F52 A;  1QK1 A;  1VRP A;  1U6R A;  4BHL A;  2BVC A; 
#chains in the Genus database with same CATH topology
 3DRB A;  5J9A A;  2OJW A;  2D3B A;  4ACF A;  3IG5 A;  2D3C A;  4BG4 A;  3LN6 A;  4XYC A;  3LN7 A;  1TT4 A;  1F1H A;  4GVZ A;  1FPY A;  1SD0 A;  1I0E A;  1P52 A;  2D3A A;  3ZXR A;  3JQ3 A;  4LNK A;  4BAX A;  1F52 A;  1QK1 A;  1P50 A;  4S17 A;  4GW2 A;  3DRE A;  2WGS A;  3L2D A;  3ZXV A;  3L2E B;  3NZT A;  2J1Q A;  1VA6 A;  4RF8 A;  2QC8 A;  1HTQ A;  4Q2R A;  4LNN A;  1RL9 A;  4RF6 A;  2CRK A;  3JU6 A;  4HPP A;  1V4G A;  4LNI A;  3NG0 A;  4Z9M A;  2D33 A;  5J99 A;  3JU5 A;  2GWC A;  4BG4 B;  3FKY A;  2UU7 A;  4RF7 A;  1CRK A;  4GVY A;  1LGR A;  1QH4 A;  2LGS A;  4GW0 A;  2GWD A;  3LVV A;  4LNO A;  2GLS A;  1BG0 A;  1M15 A;  4LNF A;  1U6R A;  4BHL A;  3JPZ A;  1HTO A;  4AM1 A;  4RF9 A;  4S0R A;  2WHI A;  3IG8 A;  3L2E A;  2D32 A;  1G0W A;  1R8G A;  3B6R A;  3M10 A;  3LVW A;  1VRP A;  2BVC A; 
#chains in the Genus database with same CATH homology
 1P50 A;  4LNI A;  4S17 A;  4GW2 A;  3DRE A;  3DRB A;  3JPZ A;  5J9A A;  2WGS A;  3NG0 A;  4Z9M A;  5J99 A;  3JU5 A;  3L2D A;  1HTO A;  4AM1 A;  4RF9 A;  3ZXV A;  4S0R A;  4BG4 B;  2WHI A;  4ACF A;  3L2E B;  4BG4 A;  2J1Q A;  3L2E A;  4RF8 A;  4RF7 A;  1CRK A;  4GVY A;  4XYC A;  1HTQ A;  1LGR A;  1QH4 A;  2LGS A;  4GW0 A;  1G0W A;  1F1H A;  4GVZ A;  1FPY A;  4Q2R A;  4LNO A;  4LNN A;  3B6R A;  3M10 A;  1RL9 A;  1SD0 A;  4RF6 A;  1I0E A;  2GLS A;  2CRK A;  3JU6 A;  1P52 A;  1BG0 A;  1M15 A;  4HPP A;  3ZXR A;  4LNF A;  3JQ3 A;  4LNK A;  1F52 A;  1QK1 A;  1VRP A;  1U6R A;  4BHL A;  2BVC A; 
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