4GVYA

Crystal structure of arginine kinase in complex with l-citrulline and mgadp
Total Genus 129
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
129
sequence length
356
structure length
356
Chain Sequence
VDQATLDKLEAGFKKLQEASDCKSLLKKHLTKDVFDSIKNKKTGMGATLLDVIQSGVENLDSGVGIYAPDAESYRTFGPLFDPIIDDYHGGFKLTDKHPPKQWGDINTLVGLDPAGQFIISTRVRCGRSLQGYPFNPCLTAEQYKEMEEKVSSTLSSMEDELKGTYYPLTGMSKATQQQLIDDHFLFKEGDRFLQTANACRYWPTGRGIFHNDAKTFLVWVNEEDHLRIISMQKGGDLKTVYKRLVTAVDNIESKLPFSHDDRFGFLTFCPTNLGTTMRASVHIQLPKLAKDRKVLEDIASKFNLQVRGTRGEHTESEGGVYDISNKRRLGLTEYQAVREMQDGILEMIKMEKAAA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structures of arginine kinase in complex with ADP, nitrate, and various phosphagen analogs.
pubmed doi rcsb
source organism Limulus polyphemus
molecule tags Transferase
molecule keywords Arginine kinase
total genus 129
structure length 356
sequence length 356
ec nomenclature ec 2.7.3.3: Arginine kinase.
pdb deposition date 2012-08-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00217 ATP-gua_Ptrans ATP:guanido phosphotransferase, C-terminal catalytic domain
A PF02807 ATP-gua_PtransN ATP:guanido phosphotransferase, N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.135.10 Mainly Alpha Orthogonal Bundle Transferase Creatine Kinase; Chain A, domain 1 ATP:guanido phosphotransferase, N-terminal domain 4gvyA01
3.30.590.10 Alpha Beta 2-Layer Sandwich Creatine Kinase; Chain A, domain 2 Glutamine synthetase/guanido kinase, catalytic domain 4gvyA02
3ZXVA 1F52A 4BG4B 2WHIA 4S0RA 3M10A 4LNFA 1CRKA 3B6RA 5J99A 2J1QA 1P52A 1QK1A 4XYCA 4GW0A 3DREA 1QH4A 4Q2RA 3JU5A 3JPZA 4AM1A 4ACFA 4RF7A 4LNOA 4RF8A 4Z9MA 3NG0A 1LGRA 3L2DA 1BG0A 1HTOA 3L2EB 4GW2A 4RF6A 5J9AA 2GLSA 4HPPA 1SD0A 4BG4A 1HTQA 4GVZA 1I0EA 3L2EA 1F1HA 2BVCA 4LNKA 2CRKA 1G0WA 3JU6A 2LGSA 2WGSA 3ZXRA 1M15A 4S17A 4LNNA 4RF9A 1FPYA 1U6RA 4LNIA 3JQ3A 1P50A 1VRPA 3DRBA 1RL9A 4GVYA 4BHLA
chains in the Genus database with same CATH superfamily
4S0RA 4GW0A 4Q2RA 2GWDA 4LNOA 4RF8A 3NG0A 1BG0A 3L2EB 2QC8A 5J9AA 2D3BA 1F1HA 3JU6A 2WGSA 3LVWA 2GWCA 3LN6A 3JQ3A 4LNFA 1VRPA 4BHLA 4BG4B 2WHIA 2OJWA 2D3AA 2J1QA 2UU7A 1QH4A 3IG8A 3JU5A 3JPZA 1VA6A 4RF7A 4BAXA 3L2DA 1HTOA 4RF6A 1SD0A 4BG4A 1HTQA 4GVZA 3LVVA 1I0EA 4LNKA 1G0WA 4LNNA 4RF9A 1TT4A 3DRBA 1F52A 3M10A 5J99A 1P52A 1QK1A 3DREA 4ACFA 1R8GA 4Z9MA 3NZTA 4GW2A 2D32A 4HPPA 2BVCA 2CRKA 2D33A 2D3CA 1M15A 4S17A 1FPYA 4LNIA 1U6RA 1P50A 3FKYA 4GVYA 3ZXVA 1CRKA 3B6RA 3LN7A 4XYCA 4AM1A 1LGRA 2GLSA 2LGSA 3ZXRA 1V4GA 3L2EA 3IG5A 1RL9A
chains in the Genus database with same CATH topology
3ZXVA 1F52A 4BG4B 2WHIA 4S0RA 3M10A 4LNFA 1CRKA 3B6RA 5J99A 2J1QA 1P52A 1QK1A 4XYCA 4GW0A 3DREA 1QH4A 4Q2RA 3JU5A 3JPZA 4AM1A 4ACFA 4RF7A 4LNOA 4RF8A 4Z9MA 3NG0A 1LGRA 3L2DA 1BG0A 1HTOA 3L2EB 4GW2A 4RF6A 5J9AA 2GLSA 4HPPA 1SD0A 4BG4A 1HTQA 4GVZA 1I0EA 3L2EA 1F1HA 2BVCA 4LNKA 2CRKA 1G0WA 3JU6A 2LGSA 2WGSA 3ZXRA 1M15A 4S17A 4LNNA 4RF9A 1FPYA 1U6RA 4LNIA 3JQ3A 1P50A 1VRPA 3DRBA 1RL9A 4GVYA 4BHLA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3ZXV A;  1F52 A;  4BG4 B;  2WHI A;  4S0R A;  3M10 A;  4LNF A;  1CRK A;  3B6R A;  5J99 A;  2J1Q A;  1P52 A;  1QK1 A;  4XYC A;  4GW0 A;  3DRE A;  1QH4 A;  4Q2R A;  3JU5 A;  3JPZ A;  4AM1 A;  4ACF A;  4RF7 A;  4LNO A;  4RF8 A;  4Z9M A;  3NG0 A;  1LGR A;  3L2D A;  1BG0 A;  1HTO A;  3L2E B;  4GW2 A;  4RF6 A;  5J9A A;  2GLS A;  4HPP A;  1SD0 A;  4BG4 A;  1HTQ A;  4GVZ A;  1I0E A;  3L2E A;  1F1H A;  2BVC A;  4LNK A;  2CRK A;  1G0W A;  3JU6 A;  2LGS A;  2WGS A;  3ZXR A;  1M15 A;  4S17 A;  4LNN A;  4RF9 A;  1FPY A;  1U6R A;  4LNI A;  3JQ3 A;  1P50 A;  1VRP A;  3DRB A;  1RL9 A;  4GVY A;  4BHL A; 
#chains in the Genus database with same CATH topology
 4S0R A;  4GW0 A;  4Q2R A;  2GWD A;  4LNO A;  4RF8 A;  3NG0 A;  1BG0 A;  3L2E B;  2QC8 A;  5J9A A;  2D3B A;  1F1H A;  3JU6 A;  2WGS A;  3LVW A;  2GWC A;  3LN6 A;  3JQ3 A;  4LNF A;  1VRP A;  4BHL A;  4BG4 B;  2WHI A;  2OJW A;  2D3A A;  2J1Q A;  2UU7 A;  1QH4 A;  3IG8 A;  3JU5 A;  3JPZ A;  1VA6 A;  4RF7 A;  4BAX A;  3L2D A;  1HTO A;  4RF6 A;  1SD0 A;  4BG4 A;  1HTQ A;  4GVZ A;  3LVV A;  1I0E A;  4LNK A;  1G0W A;  4LNN A;  4RF9 A;  1TT4 A;  3DRB A;  1F52 A;  3M10 A;  5J99 A;  1P52 A;  1QK1 A;  3DRE A;  4ACF A;  1R8G A;  4Z9M A;  3NZT A;  4GW2 A;  2D32 A;  4HPP A;  2BVC A;  2CRK A;  2D33 A;  2D3C A;  1M15 A;  4S17 A;  1FPY A;  4LNI A;  1U6R A;  1P50 A;  3FKY A;  4GVY A;  3ZXV A;  1CRK A;  3B6R A;  3LN7 A;  4XYC A;  4AM1 A;  1LGR A;  2GLS A;  2LGS A;  3ZXR A;  1V4G A;  3L2E A;  3IG5 A;  1RL9 A; 
#chains in the Genus database with same CATH homology
 3ZXV A;  1F52 A;  4BG4 B;  2WHI A;  4S0R A;  3M10 A;  4LNF A;  1CRK A;  3B6R A;  5J99 A;  2J1Q A;  1P52 A;  1QK1 A;  4XYC A;  4GW0 A;  3DRE A;  1QH4 A;  4Q2R A;  3JU5 A;  3JPZ A;  4AM1 A;  4ACF A;  4RF7 A;  4LNO A;  4RF8 A;  4Z9M A;  3NG0 A;  1LGR A;  3L2D A;  1BG0 A;  1HTO A;  3L2E B;  4GW2 A;  4RF6 A;  5J9A A;  2GLS A;  4HPP A;  1SD0 A;  4BG4 A;  1HTQ A;  4GVZ A;  1I0E A;  3L2E A;  1F1H A;  2BVC A;  4LNK A;  2CRK A;  1G0W A;  3JU6 A;  2LGS A;  2WGS A;  3ZXR A;  1M15 A;  4S17 A;  4LNN A;  4RF9 A;  1FPY A;  1U6R A;  4LNI A;  3JQ3 A;  1P50 A;  1VRP A;  3DRB A;  1RL9 A;  4GVY A;  4BHL A; 
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similar chains in the Genus database (?% sequence similarity)
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