1P50A

Transition state structure of an arginine kinase mutant
Total Genus 122
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
122
sequence length
356
structure length
356
Chain Sequence
VDQATLDKLEAGFKKLQEASDCKSLLKKHLTKDVFDSIKNKKTGMGATLLDVIQSGVENLDSGVGIYAPDAESYRTFGPLFDPIIDDYHGGFKLTDKHPPKQWGDINTLVGLDPAGQFIISTRVRCGRSLQGYPFNPCLTAEQYKEMEEKVSSTLSSMEDELKGTYYPLTGMSKATQQQLIDDHFLFKEGDRFLQTANACRYWPTGRGIFHNDAKTFLVWVNEQDHLRIISMQKGGDLKTVYKRLVTAVDNIESKLPFSHDDRFGFLTFCPTNLGTTMRASVHIQLPKLAKDRKVLEDIASKFNLQVRGTRGEHTESEGGVYDISNKRRLGLTEYQAVREMQDGILEMIKMEKAAA
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Transferase
source organism Limulus polyphemus
publication title The putative catalytic bases have, at most, an accessory role in the mechanism of arginine kinase.
pubmed doi rcsb
molecule keywords Arginine kinase
total genus 122
structure length 356
sequence length 356
ec nomenclature ec 2.7.3.3: Arginine kinase.
pdb deposition date 2003-04-24

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00217 ATP-gua_Ptrans ATP:guanido phosphotransferase, C-terminal catalytic domain
A PF02807 ATP-gua_PtransN ATP:guanido phosphotransferase, N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.135.10 Mainly Alpha Orthogonal Bundle Transferase Creatine Kinase; Chain A, domain 1 ATP:guanido phosphotransferase, N-terminal domain 1p50A01
3.30.590.10 Alpha Beta 2-Layer Sandwich Creatine Kinase; Chain A, domain 2 Glutamine synthetase/guanido kinase, catalytic domain 1p50A02
1I0EA 1G0WA 3ZXRA 3JPZA 4ACFA 1HTOA 1RL9A 4BG4B 2BVCA 4LNKA 1CRKA 2CRKA 1U6RA 3L2EA 3L2DA 4Z9MA 4BG4A 5J99A 3M10A 2WGSA 4GW0A 4LNIA 4LNNA 4LNFA 2GLSA 1P52A 3DREA 2WHIA 1HTQA 4RF9A 3JU5A 4HPPA 4S17A 1M15A 1SD0A 3JQ3A 3DRBA 4Q2RA 4AM1A 5J9AA 3NG0A 1BG0A 4S0RA 4RF7A 1F1HA 4LNOA 3B6RA 3ZXVA 3JU6A 4BHLA 1QH4A 4RF6A 1LGRA 1QK1A 4GW2A 2LGSA 3L2EB 1F52A 2J1QA 4GVZA 1VRPA 4RF8A 1FPYA 4XYCA 4GVYA 1P50A
chains in the Genus database with same CATH superfamily
1VA6A 1HTOA 1V4GA 4LNIA 3L2DA 2WGSA 2D3BA 2GLSA 3DREA 2WHIA 5J9AA 3NG0A 3IG5A 2QC8A 4BHLA 3FKYA 3L2EB 1BG0A 2J1QA 4RF8A 1G0WA 4LNKA 1CRKA 3L2EA 4ACFA 2OJWA 1HTQA 2D3CA 4HPPA 3DRBA 2GWDA 3LN7A 3IG8A 1F1HA 3B6RA 3ZXVA 3JU6A 1LGRA 4GVZA 1FPYA 4XYCA 2D3AA 1I0EA 1P50A 3JPZA 2GWCA 1RL9A 2BVCA 2CRKA 1U6RA 5J99A 4Z9MA 3M10A 2UU7A 4LNNA 4BAXA 1P52A 4RF9A 3JU5A 1TT4A 4S17A 3JQ3A 4RF7A 4RF6A 1QK1A 4GW2A 2LGSA 4BG4B 2D32A 3ZXRA 3LVWA 3LVVA 4BG4A 2D33A 4GW0A 4LNFA 1R8GA 1M15A 1SD0A 4S0RA 4AM1A 4Q2RA 3NZTA 4LNOA 1QH4A 1F52A 3LN6A 1VRPA 4GVYA
chains in the Genus database with same CATH topology
1I0EA 1G0WA 3ZXRA 3JPZA 4ACFA 1HTOA 1RL9A 4BG4B 2BVCA 4LNKA 1CRKA 2CRKA 1U6RA 3L2EA 3L2DA 4Z9MA 4BG4A 5J99A 3M10A 2WGSA 4GW0A 4LNIA 4LNNA 4LNFA 2GLSA 1P52A 3DREA 2WHIA 1HTQA 4RF9A 3JU5A 4HPPA 4S17A 1M15A 1SD0A 3JQ3A 3DRBA 4Q2RA 4AM1A 5J9AA 3NG0A 1BG0A 4S0RA 4RF7A 1F1HA 4LNOA 3B6RA 3ZXVA 3JU6A 4BHLA 1QH4A 4RF6A 1LGRA 1QK1A 4GW2A 2LGSA 3L2EB 1F52A 2J1QA 4GVZA 1VRPA 4RF8A 1FPYA 4XYCA 4GVYA 1P50A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1I0E A;  1G0W A;  3ZXR A;  3JPZ A;  4ACF A;  1HTO A;  1RL9 A;  4BG4 B;  2BVC A;  4LNK A;  1CRK A;  2CRK A;  1U6R A;  3L2E A;  3L2D A;  4Z9M A;  4BG4 A;  5J99 A;  3M10 A;  2WGS A;  4GW0 A;  4LNI A;  4LNN A;  4LNF A;  2GLS A;  1P52 A;  3DRE A;  2WHI A;  1HTQ A;  4RF9 A;  3JU5 A;  4HPP A;  4S17 A;  1M15 A;  1SD0 A;  3JQ3 A;  3DRB A;  4Q2R A;  4AM1 A;  5J9A A;  3NG0 A;  1BG0 A;  4S0R A;  4RF7 A;  1F1H A;  4LNO A;  3B6R A;  3ZXV A;  3JU6 A;  4BHL A;  1QH4 A;  4RF6 A;  1LGR A;  1QK1 A;  4GW2 A;  2LGS A;  3L2E B;  1F52 A;  2J1Q A;  4GVZ A;  1VRP A;  4RF8 A;  1FPY A;  4XYC A;  4GVY A;  1P50 A; 
#chains in the Genus database with same CATH topology
 1VA6 A;  1HTO A;  1V4G A;  4LNI A;  3L2D A;  2WGS A;  2D3B A;  2GLS A;  3DRE A;  2WHI A;  5J9A A;  3NG0 A;  3IG5 A;  2QC8 A;  4BHL A;  3FKY A;  3L2E B;  1BG0 A;  2J1Q A;  4RF8 A;  1G0W A;  4LNK A;  1CRK A;  3L2E A;  4ACF A;  2OJW A;  1HTQ A;  2D3C A;  4HPP A;  3DRB A;  2GWD A;  3LN7 A;  3IG8 A;  1F1H A;  3B6R A;  3ZXV A;  3JU6 A;  1LGR A;  4GVZ A;  1FPY A;  4XYC A;  2D3A A;  1I0E A;  1P50 A;  3JPZ A;  2GWC A;  1RL9 A;  2BVC A;  2CRK A;  1U6R A;  5J99 A;  4Z9M A;  3M10 A;  2UU7 A;  4LNN A;  4BAX A;  1P52 A;  4RF9 A;  3JU5 A;  1TT4 A;  4S17 A;  3JQ3 A;  4RF7 A;  4RF6 A;  1QK1 A;  4GW2 A;  2LGS A;  4BG4 B;  2D32 A;  3ZXR A;  3LVW A;  3LVV A;  4BG4 A;  2D33 A;  4GW0 A;  4LNF A;  1R8G A;  1M15 A;  1SD0 A;  4S0R A;  4AM1 A;  4Q2R A;  3NZT A;  4LNO A;  1QH4 A;  1F52 A;  3LN6 A;  1VRP A;  4GVY A; 
#chains in the Genus database with same CATH homology
 1I0E A;  1G0W A;  3ZXR A;  3JPZ A;  4ACF A;  1HTO A;  1RL9 A;  4BG4 B;  2BVC A;  4LNK A;  1CRK A;  2CRK A;  1U6R A;  3L2E A;  3L2D A;  4Z9M A;  4BG4 A;  5J99 A;  3M10 A;  2WGS A;  4GW0 A;  4LNI A;  4LNN A;  4LNF A;  2GLS A;  1P52 A;  3DRE A;  2WHI A;  1HTQ A;  4RF9 A;  3JU5 A;  4HPP A;  4S17 A;  1M15 A;  1SD0 A;  3JQ3 A;  3DRB A;  4Q2R A;  4AM1 A;  5J9A A;  3NG0 A;  1BG0 A;  4S0R A;  4RF7 A;  1F1H A;  4LNO A;  3B6R A;  3ZXV A;  3JU6 A;  4BHL A;  1QH4 A;  4RF6 A;  1LGR A;  1QK1 A;  4GW2 A;  2LGS A;  3L2E B;  1F52 A;  2J1Q A;  4GVZ A;  1VRP A;  4RF8 A;  1FPY A;  4XYC A;  4GVY A;  1P50 A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...