1G0WA

Crystal structure of bovine retinal creatine kinase
Total Genus 131
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
131
sequence length
380
structure length
372
Chain Sequence
PFSNSHNTLKLRFPAEDEFPDLSGHNNHMAKVLTPELYAELRAKSTPSGFTVDDVIQTGVDNPGHPYIMTVGCVAGDEESYDVFKELFDPIIEDRHGGYKPTDEHKTDLNPDNLQGGDDLDPNYVLSSRVRTGRSIRGFCLPPHCSRGERRAIEKLAVEALSSLDGDLAGRYYALKSMTEAEQQQLIDDHFLFDKPVSPLLLASGMARDWPDARGIWHNDNKTFLVWINEEDHLRVISMQKGGNMKEVFTRFCNGLTQIETLFKSKNYEFMWNPHLGYILTCPSNLGTGLRAGVHIKLPHLGKHEKFSEVLKRLRLQKRGVGGVFDVSNADRLGFSEVELVQMVVDGVKLLIEMEQRLEQGQAIDDLMPAQK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title The three-dimensional structure of cytosolic bovine retinal creatine kinase.
pubmed doi rcsb
molecule tags Transferase
molecule keywords CREATINE KINASE
total genus 131
structure length 372
sequence length 380
ec nomenclature ec 2.7.3.2: Creatine kinase.
pdb deposition date 2000-10-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00217 ATP-gua_Ptrans ATP:guanido phosphotransferase, C-terminal catalytic domain
A PF02807 ATP-gua_PtransN ATP:guanido phosphotransferase, N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.135.10 Mainly Alpha Orthogonal Bundle Transferase Creatine Kinase; Chain A, domain 1 ATP:guanido phosphotransferase, N-terminal domain 1g0wA01
3.30.590.10 Alpha Beta 2-Layer Sandwich Creatine Kinase; Chain A, domain 2 Glutamine synthetase/guanido kinase, catalytic domain 1g0wA02
2GLSA 1QK1A 5J99A 1M15A 4S17A 2WGSA 4RF8A 4XYCA 4Q2RA 1U6RA 3JU6A 4BG4B 2BVCA 1HTQA 3L2EB 1P52A 5J9AA 1RL9A 3JPZA 4GW2A 3DRBA 4HPPA 1SD0A 2WHIA 2J1QA 4LNNA 4LNOA 4S0RA 1BG0A 1I0EA 4RF7A 1P50A 1LGRA 4Z9MA 4GW0A 4LNFA 1F52A 4AM1A 4RF6A 3NG0A 1F1HA 1CRKA 4GVZA 3L2DA 4LNKA 1HTOA 3ZXRA 4ACFA 1FPYA 3JQ3A 1VRPA 4GVYA 3ZXVA 4RF9A 2LGSA 1QH4A 4BG4A 3JU5A 3L2EA 3B6RA 3DREA 4LNIA 2CRKA 3M10A 1G0WA 4BHLA
chains in the Genus database with same CATH superfamily
5J99A 4XYCA 1U6RA 4BG4B 1HTQA 3L2EB 2J1QA 1I0EA 1LGRA 4Z9MA 4GW0A 4LNFA 1F1HA 1CRKA 1V4GA 3L2DA 1HTOA 3ZXRA 1TT4A 3B6RA 3JU6A 1G0WA 3LVVA 2UU7A 4BAXA 1RL9A 3JPZA 4HPPA 4S0RA 1BG0A 1P50A 2D33A 2D3AA 1VA6A 2QC8A 4LNKA 2D3BA 1FPYA 4RF9A 3DREA 4LNIA 2CRKA 4BHLA 1QK1A 3LN7A 2BVCA 1P52A 5J9AA 1SD0A 4LNOA 4RF7A 3NZTA 3IG5A 4AM1A 4RF6A 4GVZA 2LGSA 3IG8A 1QH4A 3JU5A 3L2EA 2WHIA 3M10A 1M15A 2D3CA 4S17A 4RF8A 2OJWA 4Q2RA 3LVWA 4GW2A 3DRBA 4ACFA 1R8GA 4LNNA 3FKYA 2D32A 1F52A 3NG0A 3LN6A 3JQ3A 1VRPA 4GVYA 3ZXVA 4BG4A 2GWCA 2GWDA 2WGSA 2GLSA
chains in the Genus database with same CATH topology
2GLSA 1QK1A 5J99A 1M15A 4S17A 2WGSA 4RF8A 4XYCA 4Q2RA 1U6RA 3JU6A 4BG4B 2BVCA 1HTQA 3L2EB 1P52A 5J9AA 1RL9A 3JPZA 4GW2A 3DRBA 4HPPA 1SD0A 2WHIA 2J1QA 4LNNA 4LNOA 4S0RA 1BG0A 1I0EA 4RF7A 1P50A 1LGRA 4Z9MA 4GW0A 4LNFA 1F52A 4AM1A 4RF6A 3NG0A 1F1HA 1CRKA 4GVZA 3L2DA 4LNKA 1HTOA 3ZXRA 4ACFA 1FPYA 3JQ3A 1VRPA 4GVYA 3ZXVA 4RF9A 2LGSA 1QH4A 4BG4A 3JU5A 3L2EA 3B6RA 3DREA 4LNIA 2CRKA 3M10A 1G0WA 4BHLA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2GLS A;  1QK1 A;  5J99 A;  1M15 A;  4S17 A;  2WGS A;  4RF8 A;  4XYC A;  4Q2R A;  1U6R A;  3JU6 A;  4BG4 B;  2BVC A;  1HTQ A;  3L2E B;  1P52 A;  5J9A A;  1RL9 A;  3JPZ A;  4GW2 A;  3DRB A;  4HPP A;  1SD0 A;  2WHI A;  2J1Q A;  4LNN A;  4LNO A;  4S0R A;  1BG0 A;  1I0E A;  4RF7 A;  1P50 A;  1LGR A;  4Z9M A;  4GW0 A;  4LNF A;  1F52 A;  4AM1 A;  4RF6 A;  3NG0 A;  1F1H A;  1CRK A;  4GVZ A;  3L2D A;  4LNK A;  1HTO A;  3ZXR A;  4ACF A;  1FPY A;  3JQ3 A;  1VRP A;  4GVY A;  3ZXV A;  4RF9 A;  2LGS A;  1QH4 A;  4BG4 A;  3JU5 A;  3L2E A;  3B6R A;  3DRE A;  4LNI A;  2CRK A;  3M10 A;  1G0W A;  4BHL A; 
#chains in the Genus database with same CATH topology
 5J99 A;  4XYC A;  1U6R A;  4BG4 B;  1HTQ A;  3L2E B;  2J1Q A;  1I0E A;  1LGR A;  4Z9M A;  4GW0 A;  4LNF A;  1F1H A;  1CRK A;  1V4G A;  3L2D A;  1HTO A;  3ZXR A;  1TT4 A;  3B6R A;  3JU6 A;  1G0W A;  3LVV A;  2UU7 A;  4BAX A;  1RL9 A;  3JPZ A;  4HPP A;  4S0R A;  1BG0 A;  1P50 A;  2D33 A;  2D3A A;  1VA6 A;  2QC8 A;  4LNK A;  2D3B A;  1FPY A;  4RF9 A;  3DRE A;  4LNI A;  2CRK A;  4BHL A;  1QK1 A;  3LN7 A;  2BVC A;  1P52 A;  5J9A A;  1SD0 A;  4LNO A;  4RF7 A;  3NZT A;  3IG5 A;  4AM1 A;  4RF6 A;  4GVZ A;  2LGS A;  3IG8 A;  1QH4 A;  3JU5 A;  3L2E A;  2WHI A;  3M10 A;  1M15 A;  2D3C A;  4S17 A;  4RF8 A;  2OJW A;  4Q2R A;  3LVW A;  4GW2 A;  3DRB A;  4ACF A;  1R8G A;  4LNN A;  3FKY A;  2D32 A;  1F52 A;  3NG0 A;  3LN6 A;  3JQ3 A;  1VRP A;  4GVY A;  3ZXV A;  4BG4 A;  2GWC A;  2GWD A;  2WGS A;  2GLS A; 
#chains in the Genus database with same CATH homology
 2GLS A;  1QK1 A;  5J99 A;  1M15 A;  4S17 A;  2WGS A;  4RF8 A;  4XYC A;  4Q2R A;  1U6R A;  3JU6 A;  4BG4 B;  2BVC A;  1HTQ A;  3L2E B;  1P52 A;  5J9A A;  1RL9 A;  3JPZ A;  4GW2 A;  3DRB A;  4HPP A;  1SD0 A;  2WHI A;  2J1Q A;  4LNN A;  4LNO A;  4S0R A;  1BG0 A;  1I0E A;  4RF7 A;  1P50 A;  1LGR A;  4Z9M A;  4GW0 A;  4LNF A;  1F52 A;  4AM1 A;  4RF6 A;  3NG0 A;  1F1H A;  1CRK A;  4GVZ A;  3L2D A;  4LNK A;  1HTO A;  3ZXR A;  4ACF A;  1FPY A;  3JQ3 A;  1VRP A;  4GVY A;  3ZXV A;  4RF9 A;  2LGS A;  1QH4 A;  4BG4 A;  3JU5 A;  3L2E A;  3B6R A;  3DRE A;  4LNI A;  2CRK A;  3M10 A;  1G0W A;  4BHL A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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