4GW0A

Crystal structure of arginine kinase in complex with imino-l-ornithine, mgadp, and nitrate.
Total Genus 132
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
132
sequence length
356
structure length
356
Chain Sequence
VDQATLDKLEAGFKKLQEASDCKSLLKKHLTKDVFDSIKNKKTGMGATLLDVIQSGVENLDSGVGIYAPDAESYRTFGPLFDPIIDDYHGGFKLTDKHPPKQWGDINTLVGLDPAGQFIISTRVRCGRSLQGYPFNPCLTAEQYKEMEEKVSSTLSSMEDELKGTYYPLTGMSKATQQQLIDDHFLFKEGDRFLQTANACRYWPTGRGIFHNDAKTFLVWVNEEDHLRIISMQKGGDLKTVYKRLVTAVDNIESKLPFSHDDRFGFLTFCPTNLGTTMRASVHIQLPKLAKDRKVLEDIASKFNLQVRGTRGEHTESEGGVYDISNKRRLGLTEYQAVREMQDGILEMIKMEKAAA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structures of arginine kinase in complex with ADP, nitrate, and various phosphagen analogs.
pubmed doi rcsb
source organism Limulus polyphemus
molecule tags Transferase
molecule keywords Arginine kinase
total genus 132
structure length 356
sequence length 356
ec nomenclature ec 2.7.3.3: Arginine kinase.
pdb deposition date 2012-08-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00217 ATP-gua_Ptrans ATP:guanido phosphotransferase, C-terminal catalytic domain
A PF02807 ATP-gua_PtransN ATP:guanido phosphotransferase, N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.135.10 Mainly Alpha Orthogonal Bundle Transferase Creatine Kinase; Chain A, domain 1 ATP:guanido phosphotransferase, N-terminal domain 4gw0A01
3.30.590.10 Alpha Beta 2-Layer Sandwich Creatine Kinase; Chain A, domain 2 Glutamine synthetase/guanido kinase, catalytic domain 4gw0A02
3NG0A 1CRKA 4RF6A 1HTQA 2CRKA 1BG0A 4S17A 5J99A 4LNKA 1QH4A 4BG4B 5J9AA 2GLSA 3JPZA 4RF8A 1I0EA 3ZXRA 2LGSA 3B6RA 4RF7A 1G0WA 3L2EB 1FPYA 4GVZA 1QK1A 4RF9A 2WGSA 4HPPA 1SD0A 3L2EA 2WHIA 1LGRA 4GW2A 1RL9A 2J1QA 4S0RA 1HTOA 1P52A 4ACFA 4LNIA 1U6RA 4GW0A 4BG4A 3JQ3A 4BHLA 4LNOA 1P50A 4LNFA 4AM1A 4Z9MA 4GVYA 2BVCA 3L2DA 4Q2RA 1VRPA 4XYCA 1F52A 1M15A 1F1HA 3DRBA 3JU5A 3ZXVA 3M10A 4LNNA 3DREA 3JU6A
chains in the Genus database with same CATH superfamily
1CRKA 5J99A 2D32A 5J9AA 2GLSA 2UU7A 2LGSA 3B6RA 1G0WA 1SD0A 1VA6A 2OJWA 3L2EA 1TT4A 4ACFA 4LNIA 4GW0A 4BG4A 3LVWA 2GWCA 1F1HA 4XYCA 4BG4B 3DREA 1R8GA 3NZTA 4S17A 2QC8A 4GVZA 2WHIA 2D3CA 1LGRA 4S0RA 1RL9A 3JQ3A 1P50A 2D3AA 4LNFA 4Z9MA 1VRPA 1M15A 4HPPA 4LNNA 3LVVA 2CRKA 1BG0A 1I0EA 3IG5A 4RF9A 2GWDA 4GW2A 2J1QA 1P52A 1U6RA 2D33A 4BHLA 4LNOA 2BVCA 3L2DA 4Q2RA 1F52A 3ZXVA 3JU5A 3LN6A 1V4GA 3JU6A 3NG0A 4RF6A 4LNKA 3LN7A 1QH4A 3JPZA 3IG8A 3ZXRA 4RF7A 3L2EB 1FPYA 1QK1A 2D3BA 2WGSA 1HTOA 3FKYA 4AM1A 4GVYA 3M10A 4BAXA 1HTQA 4RF8A 3DRBA
chains in the Genus database with same CATH topology
3NG0A 1CRKA 4RF6A 1HTQA 2CRKA 1BG0A 4S17A 5J99A 4LNKA 1QH4A 4BG4B 5J9AA 2GLSA 3JPZA 4RF8A 1I0EA 3ZXRA 2LGSA 3B6RA 4RF7A 1G0WA 3L2EB 1FPYA 4GVZA 1QK1A 4RF9A 2WGSA 4HPPA 1SD0A 3L2EA 2WHIA 1LGRA 4GW2A 1RL9A 2J1QA 4S0RA 1HTOA 1P52A 4ACFA 4LNIA 1U6RA 4GW0A 4BG4A 3JQ3A 4BHLA 4LNOA 1P50A 4LNFA 4AM1A 4Z9MA 4GVYA 2BVCA 3L2DA 4Q2RA 1VRPA 4XYCA 1F52A 1M15A 1F1HA 3DRBA 3JU5A 3ZXVA 3M10A 4LNNA 3DREA 3JU6A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3NG0 A;  1CRK A;  4RF6 A;  1HTQ A;  2CRK A;  1BG0 A;  4S17 A;  5J99 A;  4LNK A;  1QH4 A;  4BG4 B;  5J9A A;  2GLS A;  3JPZ A;  4RF8 A;  1I0E A;  3ZXR A;  2LGS A;  3B6R A;  4RF7 A;  1G0W A;  3L2E B;  1FPY A;  4GVZ A;  1QK1 A;  4RF9 A;  2WGS A;  4HPP A;  1SD0 A;  3L2E A;  2WHI A;  1LGR A;  4GW2 A;  1RL9 A;  2J1Q A;  4S0R A;  1HTO A;  1P52 A;  4ACF A;  4LNI A;  1U6R A;  4GW0 A;  4BG4 A;  3JQ3 A;  4BHL A;  4LNO A;  1P50 A;  4LNF A;  4AM1 A;  4Z9M A;  4GVY A;  2BVC A;  3L2D A;  4Q2R A;  1VRP A;  4XYC A;  1F52 A;  1M15 A;  1F1H A;  3DRB A;  3JU5 A;  3ZXV A;  3M10 A;  4LNN A;  3DRE A;  3JU6 A; 
#chains in the Genus database with same CATH topology
 1CRK A;  5J99 A;  2D32 A;  5J9A A;  2GLS A;  2UU7 A;  2LGS A;  3B6R A;  1G0W A;  1SD0 A;  1VA6 A;  2OJW A;  3L2E A;  1TT4 A;  4ACF A;  4LNI A;  4GW0 A;  4BG4 A;  3LVW A;  2GWC A;  1F1H A;  4XYC A;  4BG4 B;  3DRE A;  1R8G A;  3NZT A;  4S17 A;  2QC8 A;  4GVZ A;  2WHI A;  2D3C A;  1LGR A;  4S0R A;  1RL9 A;  3JQ3 A;  1P50 A;  2D3A A;  4LNF A;  4Z9M A;  1VRP A;  1M15 A;  4HPP A;  4LNN A;  3LVV A;  2CRK A;  1BG0 A;  1I0E A;  3IG5 A;  4RF9 A;  2GWD A;  4GW2 A;  2J1Q A;  1P52 A;  1U6R A;  2D33 A;  4BHL A;  4LNO A;  2BVC A;  3L2D A;  4Q2R A;  1F52 A;  3ZXV A;  3JU5 A;  3LN6 A;  1V4G A;  3JU6 A;  3NG0 A;  4RF6 A;  4LNK A;  3LN7 A;  1QH4 A;  3JPZ A;  3IG8 A;  3ZXR A;  4RF7 A;  3L2E B;  1FPY A;  1QK1 A;  2D3B A;  2WGS A;  1HTO A;  3FKY A;  4AM1 A;  4GVY A;  3M10 A;  4BAX A;  1HTQ A;  4RF8 A;  3DRB A; 
#chains in the Genus database with same CATH homology
 3NG0 A;  1CRK A;  4RF6 A;  1HTQ A;  2CRK A;  1BG0 A;  4S17 A;  5J99 A;  4LNK A;  1QH4 A;  4BG4 B;  5J9A A;  2GLS A;  3JPZ A;  4RF8 A;  1I0E A;  3ZXR A;  2LGS A;  3B6R A;  4RF7 A;  1G0W A;  3L2E B;  1FPY A;  4GVZ A;  1QK1 A;  4RF9 A;  2WGS A;  4HPP A;  1SD0 A;  3L2E A;  2WHI A;  1LGR A;  4GW2 A;  1RL9 A;  2J1Q A;  4S0R A;  1HTO A;  1P52 A;  4ACF A;  4LNI A;  1U6R A;  4GW0 A;  4BG4 A;  3JQ3 A;  4BHL A;  4LNO A;  1P50 A;  4LNF A;  4AM1 A;  4Z9M A;  4GVY A;  2BVC A;  3L2D A;  4Q2R A;  1VRP A;  4XYC A;  1F52 A;  1M15 A;  1F1H A;  3DRB A;  3JU5 A;  3ZXV A;  3M10 A;  4LNN A;  3DRE A;  3JU6 A; 
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