4BG4B

Crystal structure of litopenaeus vannamei arginine kinase in a ternary analog complex with arginine, adp-mg and no3
Total Genus 125
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
125
sequence length
356
structure length
355
Chain Sequence
MADAAVIEKLEAGFKKLEAATDCRSLLKKYLTKDVFDKLKDKKTSLGATLLDVIQSGVENLDSGVGIYAPDAEAYTLFAPLFDPIIEDYHVGFKQTDKHPNKDFGDVNSFVNVDPEGKFVISTRVRCGRSMQGYPFNPCLTESQYKEMEAKVSSTLSSLEGELKGTYYPLTGMSKEVQQKLIDDHFLFKEGDRFLQAANARYWPAGRGIYHNDNKTFLVWVNEEDHLRIISMQMGGDLGQVFRRLTSAVNEIEKRIPFSHHDRLGFLTFCPTNLGTTVRASVHIKLPKLAANREKLEEVAGKYNLQVRGTRGEHTEAEGGIYDISNKRRMGLTEFQAVKEMQDGILELIKIEKEM
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal Structure of Shrimp Arginine Kinase in Binary Complex with Arginine-A Molecular View of the Phosphagen Precursor Binding to the Enzyme.
pubmed doi rcsb
molecule tags Transferase
molecule keywords ARGININE KINASE
total genus 125
structure length 355
sequence length 356
ec nomenclature ec 2.7.3.3: Arginine kinase.
pdb deposition date 2013-03-22

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF00217 ATP-gua_Ptrans ATP:guanido phosphotransferase, C-terminal catalytic domain
B PF02807 ATP-gua_PtransN ATP:guanido phosphotransferase, N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.135.10 Mainly Alpha Orthogonal Bundle Transferase Creatine Kinase; Chain A, domain 1 ATP:guanido phosphotransferase, N-terminal domain 4bg4B01
3.30.590.10 Alpha Beta 2-Layer Sandwich Creatine Kinase; Chain A, domain 2 Glutamine synthetase/guanido kinase, catalytic domain 4bg4B02
4BG4B 1M15A 1QH4A 2J1QA 4GVYA 1HTOA 4XYCA 3ZXRA 4LNFA 2WHIA 4LNNA 1I0EA 5J9AA 3DREA 4S0RA 3ZXVA 4Q2RA 2BVCA 4RF7A 3M10A 3DRBA 2GLSA 1LGRA 4S17A 4Z9MA 1HTQA 3L2EA 5J99A 4LNKA 3JU6A 1BG0A 3L2DA 1QK1A 1F1HA 3JU5A 2WGSA 3JPZA 4AM1A 1SD0A 4GVZA 2CRKA 4BG4A 3JQ3A 3NG0A 4HPPA 4RF9A 4ACFA 1RL9A 1G0WA 3L2EB 4RF8A 3B6RA 1VRPA 2LGSA 4GW0A 1U6RA 4GW2A 4RF6A 4BHLA 1F52A 1P52A 4LNIA 1CRKA 1P50A 4LNOA 1FPYA
chains in the Genus database with same CATH superfamily
1M15A 1HTOA 2WHIA 3DREA 3NZTA 4Q2RA 2BVCA 3M10A 3DRBA 2D3BA 1LGRA 4Z9MA 4AM1A 2CRKA 2QC8A 1RL9A 1G0WA 2D32A 2LGSA 1U6RA 4RF6A 4LNOA 2GWCA 1P50A 4BG4B 1QH4A 4GVYA 4XYCA 4LNNA 4S0RA 4S17A 1HTQA 4LNKA 1F1HA 2WGSA 1SD0A 4GVZA 4HPPA 2D3CA 4GW0A 2J1QA 3ZXRA 1I0EA 1R8GA 2OJWA 2D3AA 2UU7A 2GLSA 3L2EA 3LVWA 1BG0A 3IG8A 1QK1A 3JU5A 3JPZA 3NG0A 4RF9A 4BAXA 3LN7A 1P52A 4GW2A 4BHLA 4LNIA 1CRKA 4ACFA 1FPYA 1VA6A 4LNFA 3ZXVA 1TT4A 5J9AA 4RF7A 3IG5A 3LVVA 5J99A 3FKYA 3JU6A 3L2DA 2GWDA 4BG4A 3JQ3A 3L2EB 3B6RA 1VRPA 2D33A 1V4GA 3LN6A 1F52A 4RF8A
chains in the Genus database with same CATH topology
4BG4B 1M15A 1QH4A 2J1QA 4GVYA 1HTOA 4XYCA 3ZXRA 4LNFA 2WHIA 4LNNA 1I0EA 5J9AA 3DREA 4S0RA 3ZXVA 4Q2RA 2BVCA 4RF7A 3M10A 3DRBA 2GLSA 1LGRA 4S17A 4Z9MA 1HTQA 3L2EA 5J99A 4LNKA 3JU6A 1BG0A 3L2DA 1QK1A 1F1HA 3JU5A 2WGSA 3JPZA 4AM1A 1SD0A 4GVZA 2CRKA 4BG4A 3JQ3A 3NG0A 4HPPA 4RF9A 4ACFA 1RL9A 1G0WA 3L2EB 4RF8A 3B6RA 1VRPA 2LGSA 4GW0A 1U6RA 4GW2A 4RF6A 4BHLA 1F52A 1P52A 4LNIA 1CRKA 1P50A 4LNOA 1FPYA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4BG4 B;  1M15 A;  1QH4 A;  2J1Q A;  4GVY A;  1HTO A;  4XYC A;  3ZXR A;  4LNF A;  2WHI A;  4LNN A;  1I0E A;  5J9A A;  3DRE A;  4S0R A;  3ZXV A;  4Q2R A;  2BVC A;  4RF7 A;  3M10 A;  3DRB A;  2GLS A;  1LGR A;  4S17 A;  4Z9M A;  1HTQ A;  3L2E A;  5J99 A;  4LNK A;  3JU6 A;  1BG0 A;  3L2D A;  1QK1 A;  1F1H A;  3JU5 A;  2WGS A;  3JPZ A;  4AM1 A;  1SD0 A;  4GVZ A;  2CRK A;  4BG4 A;  3JQ3 A;  3NG0 A;  4HPP A;  4RF9 A;  4ACF A;  1RL9 A;  1G0W A;  3L2E B;  4RF8 A;  3B6R A;  1VRP A;  2LGS A;  4GW0 A;  1U6R A;  4GW2 A;  4RF6 A;  4BHL A;  1F52 A;  1P52 A;  4LNI A;  1CRK A;  1P50 A;  4LNO A;  1FPY A; 
#chains in the Genus database with same CATH topology
 1M15 A;  1HTO A;  2WHI A;  3DRE A;  3NZT A;  4Q2R A;  2BVC A;  3M10 A;  3DRB A;  2D3B A;  1LGR A;  4Z9M A;  4AM1 A;  2CRK A;  2QC8 A;  1RL9 A;  1G0W A;  2D32 A;  2LGS A;  1U6R A;  4RF6 A;  4LNO A;  2GWC A;  1P50 A;  4BG4 B;  1QH4 A;  4GVY A;  4XYC A;  4LNN A;  4S0R A;  4S17 A;  1HTQ A;  4LNK A;  1F1H A;  2WGS A;  1SD0 A;  4GVZ A;  4HPP A;  2D3C A;  4GW0 A;  2J1Q A;  3ZXR A;  1I0E A;  1R8G A;  2OJW A;  2D3A A;  2UU7 A;  2GLS A;  3L2E A;  3LVW A;  1BG0 A;  3IG8 A;  1QK1 A;  3JU5 A;  3JPZ A;  3NG0 A;  4RF9 A;  4BAX A;  3LN7 A;  1P52 A;  4GW2 A;  4BHL A;  4LNI A;  1CRK A;  4ACF A;  1FPY A;  1VA6 A;  4LNF A;  3ZXV A;  1TT4 A;  5J9A A;  4RF7 A;  3IG5 A;  3LVV A;  5J99 A;  3FKY A;  3JU6 A;  3L2D A;  2GWD A;  4BG4 A;  3JQ3 A;  3L2E B;  3B6R A;  1VRP A;  2D33 A;  1V4G A;  3LN6 A;  1F52 A;  4RF8 A; 
#chains in the Genus database with same CATH homology
 4BG4 B;  1M15 A;  1QH4 A;  2J1Q A;  4GVY A;  1HTO A;  4XYC A;  3ZXR A;  4LNF A;  2WHI A;  4LNN A;  1I0E A;  5J9A A;  3DRE A;  4S0R A;  3ZXV A;  4Q2R A;  2BVC A;  4RF7 A;  3M10 A;  3DRB A;  2GLS A;  1LGR A;  4S17 A;  4Z9M A;  1HTQ A;  3L2E A;  5J99 A;  4LNK A;  3JU6 A;  1BG0 A;  3L2D A;  1QK1 A;  1F1H A;  3JU5 A;  2WGS A;  3JPZ A;  4AM1 A;  1SD0 A;  4GVZ A;  2CRK A;  4BG4 A;  3JQ3 A;  3NG0 A;  4HPP A;  4RF9 A;  4ACF A;  1RL9 A;  1G0W A;  3L2E B;  4RF8 A;  3B6R A;  1VRP A;  2LGS A;  4GW0 A;  1U6R A;  4GW2 A;  4RF6 A;  4BHL A;  1F52 A;  1P52 A;  4LNI A;  1CRK A;  1P50 A;  4LNO A;  1FPY A; 
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similar chains in the Genus database (?% sequence similarity)
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