1G5NA

Annexin v complex with heparin oligosaccharides
Total Genus 127

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
127
sequence length
318
structure length
318
Chain Sequence
ALRGTVTDFSGFDGRADAEVLRKAMKGLGTDEDSILNLLTARSNAQRQQIAEEFKTLFGRDLVNDMKSELTGKFEKLIVALMKPSRLYDAYELKHALKGAGTDEKVLTEIIASRTPEELRAIKQAYEEEYGSNLEDDVVGDTSGYYQRMLVVLLQANRDPDTAIDDAQVELDAQALFQAGELKWGTDEEKFITILGTRSVSHLRRVFDKYMTISGFQIEETIDRETSGNLENLLLAVVKSIRSIPAYLAETLYYAMKGAGTDDHTLIRVIVSRSEIDLFNIRKEFRKNFATSLYSMIKGDTSGDYKKALLLLCGGEDD
5010015020025030030025020015010050
020406080100120Genus Matrix

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
AH2 (33-41)AH3 (45-59)AH6 (86-98)AH8 (117-131)AH7 (105-114)AH10 (145-156)AH17 (264-275)AH9 (135-142)AH11 (167-181)AH12 (189-198)AH13 (201-215)TIV1 (184-187)AH14 (219-226)AH15 (229-243)AH16 (245-255)TI2 (255-258)AH18 (279-290)AH20 (304-314)AH19 (294-300)AH1 (15-26)TII1 (10-13)AH5 (73-83)EMPTYTI1 (181-184)TIV2 (275-278)AH4 (63-70)Updating...
connected with : NaN
molecule tags Blood clotting
source organism Rattus norvegicus
publication title Annexin V--heparin oligosaccharide complex suggests heparan sulfate--mediated assembly on cell surfaces.
pubmed doi rcsb
molecule keywords ANNEXIN V
total genus 127
structure length 318
sequence length 318
ec nomenclature
pdb deposition date 2000-11-01

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00191 Annexin Annexin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.220.10 Mainly Alpha Orthogonal Bundle Annexin V; domain 1 Annexin 1g5nA02
1.10.220.10 Mainly Alpha Orthogonal Bundle Annexin V; domain 1 Annexin 1g5nA04
1.10.220.10 Mainly Alpha Orthogonal Bundle Annexin V; domain 1 Annexin 1g5nA01
1.10.220.10 Mainly Alpha Orthogonal Bundle Annexin V; domain 1 Annexin 1g5nA03
1M9IA 4EVFA 2ZHIA 1YJ0A 1HVDA 2HYWA 1AOWA 2H0LA 1ALAA 1HVEA 1AVCA 2IE7A 1DK5A 1BC1A 2ZHJA 1HM6A 3BRXA 4EVHA 2Q4CA 1AXNA 1BCYA 1G5NA 2XO2A 4X9PA 1HVGA 1MCXA 4MDUA 2HYVA 4MDVA 1ANWA 1N41A 2IICA 1ANNA 1ANXA 2II2A 2H0MA 2RANA 2H0KA 2ZOCA 4HREA 1DM5A 1AIIA 2HYUA 1HAKA 1A8AA 1AVRA 1N00A 1BC0A 1I4AA 1BCZA 1AEIA 1XJLA 1W3WA 1YCNA 1BC3A 1YIIA 2IE6A 1W45A 1BCWA 1W7BA 1AVHA 1N42A 1SAVA 1BO9A 1HVFA 1A8BA 2XO3A 1N44A
chains in the Genus database with same CATH superfamily
3ABOA 3TW5A 1UPTB 4EVFA 1QC7A 1HVDA 1HVEA 1DK5A 1BC1A 2QEZA 1G5NA 3SOHB 1HVGA 1S9DE 4JMIA 1ANWA 2RANA 2ZOCA 3ABRA 4HREA 1AIIA 1AVRA 1BC0A 3ANYA 4KN7X 1BC3A 2OY9A 1BCWA 1SAVA 1XT0B 1M9IA 1R8QE 4D7QA 2R09A 3SWVA 2R0DA 3ABQA 2ZHJA 4Q2SA 1PBVA 4X9PA 1MCXA 2IICA 1ANXA 2H0KA 3ABSA 4OIYA 2HYUA 1HAKA 4A4PA 4FQ0C 1XJLA 1YCNA 2VXGA 1YIIA 2IE6A 1W7BA 4JXHA 4JMOA 3AO0A 1YJ0A 3USYA 2IE7A 1YGMA 1C1KA 2HYWA 2H0LA 1ALAA 3BRXA 3LTLA 4EVHA 1HM6A 2Q4CA 1AXNA 3HJLA 4MDUA 2HYVA 4MDVA 4KMUX 1ANNA 1RE0B 2II2A 1DM5A 1LKVX 1A8AA 1I4AA 1AEIA 3AJCA 2HSNA 1W45A 1AVHA 1N42A 1BO9A 4JWLA 1A8BA 2XO3A 4D7RA 4JK1X 1Q8DA 2ZHIA 1AOWA 4KN4X 1AVCA 1BC9A 4FHRB 4Z21A 1BCYA 1KU1A 1XSZA 2XO2A 2K6XA 1N41A 2H0MA 1R8SE 4C0AA 1R8ME 1R4AE 3USWA 1N00A 1BCZA 4L5MA 1W3WA 3L8NA 4C7PA 1HVFA 1N44A
chains in the Genus database with same CATH topology
1M9IA 4EVFA 2ZHIA 1YJ0A 1HVDA 2HYWA 1AOWA 2H0LA 1ALAA 1HVEA 1AVCA 2IE7A 1DK5A 1BC1A 2ZHJA 1HM6A 3BRXA 4EVHA 2Q4CA 1AXNA 1BCYA 1G5NA 2XO2A 4X9PA 1HVGA 1MCXA 4MDUA 2HYVA 4MDVA 1ANWA 1N41A 2IICA 1ANNA 1ANXA 2II2A 2H0MA 2RANA 2H0KA 2ZOCA 4HREA 1DM5A 1AIIA 2HYUA 1HAKA 1A8AA 1AVRA 1N00A 1BC0A 1I4AA 1BCZA 1AEIA 1XJLA 1W3WA 1YCNA 1BC3A 1YIIA 2IE6A 1W45A 1BCWA 1W7BA 1AVHA 1N42A 1SAVA 1BO9A 1HVFA 1A8BA 2XO3A 1N44A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1M9I A;  4EVF A;  2ZHI A;  1YJ0 A;  1HVD A;  2HYW A;  1AOW A;  2H0L A;  1ALA A;  1HVE A;  1AVC A;  2IE7 A;  1DK5 A;  1BC1 A;  2ZHJ A;  1HM6 A;  3BRX A;  4EVH A;  2Q4C A;  1AXN A;  1BCY A;  1G5N A;  2XO2 A;  4X9P A;  1HVG A;  1MCX A;  4MDU A;  2HYV A;  4MDV A;  1ANW A;  1N41 A;  2IIC A;  1ANN A;  1ANX A;  2II2 A;  2H0M A;  2RAN A;  2H0K A;  2ZOC A;  4HRE A;  1DM5 A;  1AII A;  2HYU A;  1HAK A;  1A8A A;  1AVR A;  1N00 A;  1BC0 A;  1I4A A;  1BCZ A;  1AEI A;  1XJL A;  1W3W A;  1YCN A;  1BC3 A;  1YII A;  2IE6 A;  1W45 A;  1BCW A;  1W7B A;  1AVH A;  1N42 A;  1SAV A;  1BO9 A;  1HVF A;  1A8B A;  2XO3 A;  1N44 A; 
#chains in the Genus database with same CATH topology
 3ABO A;  3TW5 A;  1UPT B;  4EVF A;  1QC7 A;  1HVD A;  1HVE A;  1DK5 A;  1BC1 A;  2QEZ A;  1G5N A;  3SOH B;  1HVG A;  1S9D E;  4JMI A;  1ANW A;  2RAN A;  2ZOC A;  3ABR A;  4HRE A;  1AII A;  1AVR A;  1BC0 A;  3ANY A;  4KN7 X;  1BC3 A;  2OY9 A;  1BCW A;  1SAV A;  1XT0 B;  1M9I A;  1R8Q E;  4D7Q A;  2R09 A;  3SWV A;  2R0D A;  3ABQ A;  2ZHJ A;  4Q2S A;  1PBV A;  4X9P A;  1MCX A;  2IIC A;  1ANX A;  2H0K A;  3ABS A;  4OIY A;  2HYU A;  1HAK A;  4A4P A;  4FQ0 C;  1XJL A;  1YCN A;  2VXG A;  1YII A;  2IE6 A;  1W7B A;  4JXH A;  4JMO A;  3AO0 A;  1YJ0 A;  3USY A;  2IE7 A;  1YGM A;  1C1K A;  2HYW A;  2H0L A;  1ALA A;  3BRX A;  3LTL A;  4EVH A;  1HM6 A;  2Q4C A;  1AXN A;  3HJL A;  4MDU A;  2HYV A;  4MDV A;  4KMU X;  1ANN A;  1RE0 B;  2II2 A;  1DM5 A;  1LKV X;  1A8A A;  1I4A A;  1AEI A;  3AJC A;  2HSN A;  1W45 A;  1AVH A;  1N42 A;  1BO9 A;  4JWL A;  1A8B A;  2XO3 A;  4D7R A;  4JK1 X;  1Q8D A;  2ZHI A;  1AOW A;  4KN4 X;  1AVC A;  1BC9 A;  4FHR B;  4Z21 A;  1BCY A;  1KU1 A;  1XSZ A;  2XO2 A;  2K6X A;  1N41 A;  2H0M A;  1R8S E;  4C0A A;  1R8M E;  1R4A E;  3USW A;  1N00 A;  1BCZ A;  4L5M A;  1W3W A;  3L8N A;  4C7P A;  1HVF A;  1N44 A; 
#chains in the Genus database with same CATH homology
 1M9I A;  4EVF A;  2ZHI A;  1YJ0 A;  1HVD A;  2HYW A;  1AOW A;  2H0L A;  1ALA A;  1HVE A;  1AVC A;  2IE7 A;  1DK5 A;  1BC1 A;  2ZHJ A;  1HM6 A;  3BRX A;  4EVH A;  2Q4C A;  1AXN A;  1BCY A;  1G5N A;  2XO2 A;  4X9P A;  1HVG A;  1MCX A;  4MDU A;  2HYV A;  4MDV A;  1ANW A;  1N41 A;  2IIC A;  1ANN A;  1ANX A;  2II2 A;  2H0M A;  2RAN A;  2H0K A;  2ZOC A;  4HRE A;  1DM5 A;  1AII A;  2HYU A;  1HAK A;  1A8A A;  1AVR A;  1N00 A;  1BC0 A;  1I4A A;  1BCZ A;  1AEI A;  1XJL A;  1W3W A;  1YCN A;  1BC3 A;  1YII A;  2IE6 A;  1W45 A;  1BCW A;  1W7B A;  1AVH A;  1N42 A;  1SAV A;  1BO9 A;  1HVF A;  1A8B A;  2XO3 A;  1N44 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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