1HAKA

Crystal structure of recombinant human placental annexin v complexed with k-201 as a calcium channel activity inhibitor
Total Genus 119

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
119
sequence length
318
structure length
318
Chain Sequence
QVLRGTVTDFPGFDERADAETLRKAMKGLGTDEESILTLLTSRSNAQRQEISAAFKTLFGRDLLDDLKSELTGKFEKLIVALMKPSRLYDAYELKHALKGAGTNEKVLTEIIASRTPEELRAIKQVYEEEYGSSLEDDVVGDTSGYYQRMLVVLLQANRDPDAGIDEAQVEQDAQALFQAGELKWGTDEEKFITIFGTRSVSHLRKVFDKYMTISGFQIEETIDRETSGNLEQLLLAVVKSIRSIPAYLAETLYYAMKGAGTDDHTLIRVMVSRSEIDLFNIRKEFRKNFATSLYSMIKGDTSGDYKKALLLLCGEDD
5010015020025030030025020015010050
020406080100Genus Matrix

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
AH1 (17-28)EMPTYTIV2 (29-32)AH4 (65-72)TIV1 (28-31)AH2 (35-44)AH3 (47-61)AH5 (75-85)O3 (264-266)AH6 (88-99)AH7 (107-116)AH16 (266-276)AH9 (137-144)TII2 (100-103)TIV3 (103-106)TIV5 (227-230)AH10 (147-158)AH14 (232-245)AH8 (119-133)AH11 (169-185)AH13 (203-217)TI'1 (185-188)3H1 (221-224)O2 (189-191)TIV4 (226-229)AH19 (306-316)AH17 (280-292)AH18 (296-303)TII1 (12-15)AH12 (192-200)AH15 (247-259)TI1 (276-279)O1 (133-135)Updating...
connected with : NaN
molecule tags Calcium/phospholipid-binding
source organism Homo sapiens
publication title Crystal structure of annexin V with its ligand K-201 as a calcium channel activity inhibitor.
pubmed doi rcsb
molecule keywords ANNEXIN V
total genus 119
structure length 318
sequence length 318
chains with identical sequence B
ec nomenclature
pdb deposition date 1997-12-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00191 Annexin Annexin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.220.10 Mainly Alpha Orthogonal Bundle Annexin V; domain 1 Annexin 1hakA02
1.10.220.10 Mainly Alpha Orthogonal Bundle Annexin V; domain 1 Annexin 1hakA04
1.10.220.10 Mainly Alpha Orthogonal Bundle Annexin V; domain 1 Annexin 1hakA01
1.10.220.10 Mainly Alpha Orthogonal Bundle Annexin V; domain 1 Annexin 1hakA03
2Q4CA 1N41A 2RANA 2HYVA 1DM5A 4EVFA 1N42A 1YIIA 1BC3A 1A8BA 1G5NA 2H0MA 1N00A 2H0KA 2IE7A 2XO2A 1ANXA 2H0LA 1BCZA 2ZOCA 4X9PA 1ANNA 1W3WA 1MCXA 1W45A 4EVHA 1HAKA 1HVEA 1YJ0A 2IE6A 2II2A 2IICA 4MDVA 1AVRA 1ANWA 1DK5A 2ZHJA 1HM6A 1I4AA 1BC1A 1AOWA 1AIIA 4MDUA 1BC0A 3BRXA 1HVDA 1AEIA 1SAVA 1XJLA 1HVFA 1BCYA 1ALAA 1AVHA 1HVGA 2HYUA 4HREA 1BCWA 1M9IA 2XO3A 1AVCA 1W7BA 2ZHIA 1YCNA 1BO9A 2HYWA 1AXNA 1A8AA 1N44A
chains in the Genus database with same CATH superfamily
1QC7A 4C7PA 2HYVA 4FQ0C 4JMOA 4D7QA 1YIIA 2OY9A 1BC3A 4Q2SA 4L5MA 2XO2A 2QEZA 1BCZA 1YJ0A 3LTLA 2IE6A 1Q8DA 1HM6A 2R09A 1BC1A 1AOWA 1PBVA 1C1KA 1XJLA 1UPTB 1BCYA 4C0AA 1M9IA 2XO3A 2ZHIA 3ABOA 1A8AA 1N41A 2K6XA 1DM5A 1S9DE 1A8BA 1R8ME 2H0MA 1N00A 2H0KA 2IE7A 3TW5A 3ABSA 1R8SE 4X9PA 2R0DA 1HVEA 2HSNA 2II2A 1XT0B 1ANWA 4D7RA 1BC9A 4A4PA 1R4AE 3L8NA 1AEIA 1HVFA 1HVGA 1AVHA 2HYUA 3HJLA 3ABRA 3SWVA 3USWA 2RANA 4EVFA 1G5NA 4JMIA 3AJCA 2ZOCA 1LKVX 1MCXA 3AO0A 1HAKA 4KN7X 1XSZA 4JK1X 2IICA 4FHRB 1AIIA 1RE0B 4MDUA 2VXGA 1SAVA 1ALAA 1BCWA 4KN4X 1YCNA 4KMUX 1YGMA 2Q4CA 1N42A 3ANYA 1KU1A 1ANXA 2H0LA 4OIYA 3USYA 1ANNA 1W3WA 1W45A 4EVHA 4MDVA 1AVRA 2ZHJA 1R8QE 1I4AA 4JWLA 3ABQA 1BC0A 3BRXA 1HVDA 4JXHA 4HREA 3SOHB 4Z21A 1AVCA 1W7BA 1BO9A 2HYWA 1AXNA 1DK5A 1N44A
chains in the Genus database with same CATH topology
2Q4CA 1N41A 2RANA 2HYVA 1DM5A 4EVFA 1N42A 1YIIA 1BC3A 1A8BA 1G5NA 2H0MA 1N00A 2H0KA 2IE7A 2XO2A 1ANXA 2H0LA 1BCZA 2ZOCA 4X9PA 1ANNA 1W3WA 1MCXA 1W45A 4EVHA 1HAKA 1HVEA 1YJ0A 2IE6A 2II2A 2IICA 4MDVA 1AVRA 1ANWA 1DK5A 2ZHJA 1HM6A 1I4AA 1BC1A 1AOWA 1AIIA 4MDUA 1BC0A 3BRXA 1HVDA 1AEIA 1SAVA 1XJLA 1HVFA 1BCYA 1ALAA 1AVHA 1HVGA 2HYUA 4HREA 1BCWA 1M9IA 2XO3A 1AVCA 1W7BA 2ZHIA 1YCNA 1BO9A 2HYWA 1AXNA 1A8AA 1N44A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2Q4C A;  1N41 A;  2RAN A;  2HYV A;  1DM5 A;  4EVF A;  1N42 A;  1YII A;  1BC3 A;  1A8B A;  1G5N A;  2H0M A;  1N00 A;  2H0K A;  2IE7 A;  2XO2 A;  1ANX A;  2H0L A;  1BCZ A;  2ZOC A;  4X9P A;  1ANN A;  1W3W A;  1MCX A;  1W45 A;  4EVH A;  1HAK A;  1HVE A;  1YJ0 A;  2IE6 A;  2II2 A;  2IIC A;  4MDV A;  1AVR A;  1ANW A;  1DK5 A;  2ZHJ A;  1HM6 A;  1I4A A;  1BC1 A;  1AOW A;  1AII A;  4MDU A;  1BC0 A;  3BRX A;  1HVD A;  1AEI A;  1SAV A;  1XJL A;  1HVF A;  1BCY A;  1ALA A;  1AVH A;  1HVG A;  2HYU A;  4HRE A;  1BCW A;  1M9I A;  2XO3 A;  1AVC A;  1W7B A;  2ZHI A;  1YCN A;  1BO9 A;  2HYW A;  1AXN A;  1A8A A;  1N44 A; 
#chains in the Genus database with same CATH topology
 1QC7 A;  4C7P A;  2HYV A;  4FQ0 C;  4JMO A;  4D7Q A;  1YII A;  2OY9 A;  1BC3 A;  4Q2S A;  4L5M A;  2XO2 A;  2QEZ A;  1BCZ A;  1YJ0 A;  3LTL A;  2IE6 A;  1Q8D A;  1HM6 A;  2R09 A;  1BC1 A;  1AOW A;  1PBV A;  1C1K A;  1XJL A;  1UPT B;  1BCY A;  4C0A A;  1M9I A;  2XO3 A;  2ZHI A;  3ABO A;  1A8A A;  1N41 A;  2K6X A;  1DM5 A;  1S9D E;  1A8B A;  1R8M E;  2H0M A;  1N00 A;  2H0K A;  2IE7 A;  3TW5 A;  3ABS A;  1R8S E;  4X9P A;  2R0D A;  1HVE A;  2HSN A;  2II2 A;  1XT0 B;  1ANW A;  4D7R A;  1BC9 A;  4A4P A;  1R4A E;  3L8N A;  1AEI A;  1HVF A;  1HVG A;  1AVH A;  2HYU A;  3HJL A;  3ABR A;  3SWV A;  3USW A;  2RAN A;  4EVF A;  1G5N A;  4JMI A;  3AJC A;  2ZOC A;  1LKV X;  1MCX A;  3AO0 A;  1HAK A;  4KN7 X;  1XSZ A;  4JK1 X;  2IIC A;  4FHR B;  1AII A;  1RE0 B;  4MDU A;  2VXG A;  1SAV A;  1ALA A;  1BCW A;  4KN4 X;  1YCN A;  4KMU X;  1YGM A;  2Q4C A;  1N42 A;  3ANY A;  1KU1 A;  1ANX A;  2H0L A;  4OIY A;  3USY A;  1ANN A;  1W3W A;  1W45 A;  4EVH A;  4MDV A;  1AVR A;  2ZHJ A;  1R8Q E;  1I4A A;  4JWL A;  3ABQ A;  1BC0 A;  3BRX A;  1HVD A;  4JXH A;  4HRE A;  3SOH B;  4Z21 A;  1AVC A;  1W7B A;  1BO9 A;  2HYW A;  1AXN A;  1DK5 A;  1N44 A; 
#chains in the Genus database with same CATH homology
 2Q4C A;  1N41 A;  2RAN A;  2HYV A;  1DM5 A;  4EVF A;  1N42 A;  1YII A;  1BC3 A;  1A8B A;  1G5N A;  2H0M A;  1N00 A;  2H0K A;  2IE7 A;  2XO2 A;  1ANX A;  2H0L A;  1BCZ A;  2ZOC A;  4X9P A;  1ANN A;  1W3W A;  1MCX A;  1W45 A;  4EVH A;  1HAK A;  1HVE A;  1YJ0 A;  2IE6 A;  2II2 A;  2IIC A;  4MDV A;  1AVR A;  1ANW A;  1DK5 A;  2ZHJ A;  1HM6 A;  1I4A A;  1BC1 A;  1AOW A;  1AII A;  4MDU A;  1BC0 A;  3BRX A;  1HVD A;  1AEI A;  1SAV A;  1XJL A;  1HVF A;  1BCY A;  1ALA A;  1AVH A;  1HVG A;  2HYU A;  4HRE A;  1BCW A;  1M9I A;  2XO3 A;  1AVC A;  1W7B A;  2ZHI A;  1YCN A;  1BO9 A;  2HYW A;  1AXN A;  1A8A A;  1N44 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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