1LKV | Genus

Total Genus 76

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	76
sequence length	213
structure length	213
Chain Sequence	DPVQLVNFLQSEHPQTIAVVLSYLDPPVAAQILGALPEELQTEVLKRIALLERTSPEVVKEIERNLEKKISGFVSRTFSKVGGIDTAAEIMNNLDRTTEKKIMDKLVQENPELADEIRRRMFVFEDILKLDDRSIQLVLREVDTRDLALALKGASDELKEKIFKNMSKRAAALLKDELEYMGPVRLKDVEEAQQKIINIIRRLEEAGEIVIAR

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Structural protein
source organism	Thermotoga maritima
publication title	Crystal structure of the middle and C-terminal domains of the flagellar rotor protein FliG. pubmed doi rcsb
molecule keywords	FLAGELLAR MOTOR SWITCH PROTEIN FLIG
total genus	76
structure length	213
sequence length	213
ec nomenclature
pdb deposition date	2002-04-25

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
X	PF01706	FliG_C	FliG C-terminal domain
X	PF14841	FliG_M	FliG middle domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.10.220.30	Mainly Alpha	Orthogonal Bundle	Annexin V; domain 1	Annexin V; domain 1	1lkvX01
1.10.220.30	Mainly Alpha	Orthogonal Bundle	Annexin V; domain 1	Annexin V; domain 1	1lkvX02

1QC7A 4FQ0C 4FHRB 3SOHB 3USWA 3USYA 3HJLA 3AJCA 1LKVX
chains in the Genus database with same CATH superfamily

1HAKA 1A8BA 4Z21A 2QEZA 1W3WA 2IE6A 2XO3A 1BCZA 1PBVA 1M9IA 2HSNA 1I4AA 1C1KA 1YCNA 3ANYA 3ABQA 2IE7A 2K6XA 4EVHA 2H0MA 2H0LA 3L8NA 2IICA 1A8AA 1XJLA 4MDVA 1Q8DA 1N42A 2HYWA 4KN7X 1AVRA 1AOWA 1YJ0A 1BC3A 4JK1X 1AIIA 4JWLA 1SAVA 3AO0A 4C0AA 1HVGA 1N44A 1RE0B 1AVCA 4Q2SA 1R8ME 1S9DE 4JXHA 1XT0B 4FQ0C 1KU1A 2R09A 4JMOA 1W7BA 1AXNA 1R4AE 4MDUA 1MCXA 4C7PA 1ANNA 1HM6A 1AEIA 1UPTB 2HYVA 2HYUA 3ABOA 2R0DA 1ALAA 1AVHA 1W45A 1R8QE 2ZHJA 1BCYA 1G5NA 4EVFA 2XO2A 3TW5A 4JMIA 3SOHB 4D7QA 1R8SE 1ANXA 4D7RA 3LTLA 1N41A 2VXGA 4FHRB 1BC0A 4OIYA 1HVEA 1BO9A 4A4PA 3ABRA 4X9PA 1ANWA 4HREA 3USYA 3BRXA 1DK5A 2H0KA 1XSZA 1LKVX 1BC9A 2OY9A 3HJLA 3SWVA 3AJCA 2II2A 1YGMA 2Q4CA 1QC7A 1HVFA 3USWA 1BC1A 1BCWA 1N00A 4KMUX 1DM5A 2ZHIA 3ABSA 1YIIA 4KN4X 2ZOCA 1HVDA 4L5MA 2RANA
chains in the Genus database with same CATH topology

4Z21A 2R0DA 3USYA 4JK1X 4JWLA 1XSZA 1R8QE 1LKVX 1PBVA 1BC9A 4C0AA 2HSNA 3HJLA 3SWVA 1RE0B 3AJCA 1R8ME 3TW5A 4JMIA 1S9DE 4JXHA 1XT0B 4D7QA 1QC7A 4FQ0C 1KU1A 2R09A 1R8SE 4JMOA 3SOHB 2K6XA 4KMUX 3USWA 4D7RA 3L8NA 3LTLA 4C7PA 4FHRB 4OIYA 1Q8DA 4KN4X 4A4PA 4KN7X 4L5MA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 1QC7 A;  4FQ0 C;  4FHR B;  3SOH B;  3USW A;  3USY A;  3HJL A;  3AJC A;  1LKV X; 
#chains in the Genus database with same CATH topology
 1HAK A;  1A8B A;  4Z21 A;  2QEZ A;  1W3W A;  2IE6 A;  2XO3 A;  1BCZ A;  1PBV A;  1M9I A;  2HSN A;  1I4A A;  1C1K A;  1YCN A;  3ANY A;  3ABQ A;  2IE7 A;  2K6X A;  4EVH A;  2H0M A;  2H0L A;  3L8N A;  2IIC A;  1A8A A;  1XJL A;  4MDV A;  1Q8D A;  1N42 A;  2HYW A;  4KN7 X;  1AVR A;  1AOW A;  1YJ0 A;  1BC3 A;  4JK1 X;  1AII A;  4JWL A;  1SAV A;  3AO0 A;  4C0A A;  1HVG A;  1N44 A;  1RE0 B;  1AVC A;  4Q2S A;  1R8M E;  1S9D E;  4JXH A;  1XT0 B;  4FQ0 C;  1KU1 A;  2R09 A;  4JMO A;  1W7B A;  1AXN A;  1R4A E;  4MDU A;  1MCX A;  4C7P A;  1ANN A;  1HM6 A;  1AEI A;  1UPT B;  2HYV A;  2HYU A;  3ABO A;  2R0D A;  1ALA A;  1AVH A;  1W45 A;  1R8Q E;  2ZHJ A;  1BCY A;  1G5N A;  4EVF A;  2XO2 A;  3TW5 A;  4JMI A;  3SOH B;  4D7Q A;  1R8S E;  1ANX A;  4D7R A;  3LTL A;  1N41 A;  2VXG A;  4FHR B;  1BC0 A;  4OIY A;  1HVE A;  1BO9 A;  4A4P A;  3ABR A;  4X9P A;  1ANW A;  4HRE A;  3USY A;  3BRX A;  1DK5 A;  2H0K A;  1XSZ A;  1LKV X;  1BC9 A;  2OY9 A;  3HJL A;  3SWV A;  3AJC A;  2II2 A;  1YGM A;  2Q4C A;  1QC7 A;  1HVF A;  3USW A;  1BC1 A;  1BCW A;  1N00 A;  4KMU X;  1DM5 A;  2ZHI A;  3ABS A;  1YII A;  4KN4 X;  2ZOC A;  1HVD A;  4L5M A;  2RAN A; 
#chains in the Genus database with same CATH homology
 4Z21 A;  2R0D A;  3USY A;  4JK1 X;  4JWL A;  1XSZ A;  1R8Q E;  1LKV X;  1PBV A;  1BC9 A;  4C0A A;  2HSN A;  3HJL A;  3SWV A;  1RE0 B;  3AJC A;  1R8M E;  3TW5 A;  4JMI A;  1S9D E;  4JXH A;  1XT0 B;  4D7Q A;  1QC7 A;  4FQ0 C;  1KU1 A;  2R09 A;  1R8S E;  4JMO A;  3SOH B;  2K6X A;  4KMU X;  3USW A;  4D7R A;  3L8N A;  3LTL A;  4C7P A;  4FHR B;  4OIY A;  1Q8D A;  4KN4 X;  4A4P A;  4KN7 X;  4L5M A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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1LKVX

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations