1MAEL

The active site structure of methylamine dehydrogenase: hydrazines identify c6 as the reactive site of the tryptophan derived quinone cofactor
Total Genus 31
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
31
sequence length
124
structure length
123
Chain Sequence
VDPRAKWQPQDNDIQACDYWRHCSIDGNICDCSGGSLTNCPPGTKLATASVASCYNPTDGQSYLIAYRDCCGYNVSGRCPCLNTEGELPVYRPEFANDIIWCFGAEDDAMTYHCTISPIVGKA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYTIV2 (84-87)TI1 (8-11)TI2 (19-22)O1 (23-88)TI6 (28-31)TI9 (64-67)TI3 (22-25)TI10 (96-99)TI4 (25-28)S5 (75-78)TII3 (109-112)3H3 (113-115)S1 (32-34)TI5 (26-29)3H1 (36-38)TIV1 (38-41)O3 (36-121)TI7 (42-45)S4 (68-72)S2 (51-52)TII2 (91-94)TI8 (63-66)S3 (59-63)S7 (119-123)3H2 (100-102)S6 (87-89)TIV4 (103-106)TII1 (47-50)Updating...
connected with : NaN
publication title Active site structure of methylamine dehydrogenase: hydrazines identify C6 as the reactive site of the tryptophan-derived quinone cofactor.
pubmed doi rcsb
molecule tags Oxidoreductase(chnh2(d)-deaminating)
source organism Paracoccus versutus
molecule keywords METHYLAMINE DEHYDROGENASE (LIGHT SUBUNIT)
total genus 31
structure length 123
sequence length 124
ec nomenclature ec 1.4.9.1: Methylamine dehydrogenase (amicyanin).
pdb deposition date 1992-05-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
L PF02975 Me-amine-dh_L Methylamine dehydrogenase, L chain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.30.10 Mainly Beta Sandwich Electron Transport Ethylamine Dehydrogenase Methylamine/Aralkylamine dehydrogenase light chain 1maeL00
2IUVD 2OK6D 3SVWC 3RN0C 3SWSC 3PXSC 2IUPD 4FA9C 2IURD 3ORVC 2AGLD 4L1QC 2IUQD 2MTAL 3SXTC 2I0SD 4Y5RC 4L3HC 4FA1C 2AH1D 3L4MC 4FA4C 2OJYD 3PXWC 1MAEL 2HJBD 2J56L 3SLEC 3PXTC 3RMZC 2HKMD 1MG2B 3RLMC 2AGYD 1MG3B 2AGXD 2H3XB 2Q7QD 2BBKL 2I0RD 2OIZD 3C75L 1MDAL 4FANC 3L4OC 2AGWD 3RN1C 2H47B 2GC7B 2J55L 2HXCD 2HJ4D 4L3GC 2AGZD 4K3IC 4FB1C 2GC4B 2I0TD 4FA5C 2AH0D 4FAVC 2HKRD 3SJLC 4O1QC 2MADL 2OK4D 1MAFL 2IAAB 2J57K
chains in the Genus database with same CATH superfamily
2IUVD 2OK6D 3SVWC 3RN0C 3SWSC 3PXSC 2IUPD 4FA9C 2IURD 3ORVC 2AGLD 4L1QC 2IUQD 2MTAL 3SXTC 2I0SD 4Y5RC 4L3HC 4FA1C 2AH1D 3L4MC 4FA4C 2OJYD 3PXWC 1MAEL 2HJBD 2J56L 3SLEC 3PXTC 3RMZC 2HKMD 1MG2B 3RLMC 2AGYD 1MG3B 2AGXD 2H3XB 2Q7QD 2BBKL 2I0RD 2OIZD 3C75L 1MDAL 4FANC 3L4OC 2AGWD 3RN1C 2H47B 2GC7B 2J55L 2HXCD 2HJ4D 4L3GC 2AGZD 4K3IC 4FB1C 2GC4B 2I0TD 4FA5C 2AH0D 4FAVC 2HKRD 3SJLC 4O1QC 2MADL 2OK4D 1MAFL 2IAAB 2J57K
chains in the Genus database with same CATH topology
2IUVD 2OK6D 3SVWC 3RN0C 3SWSC 3PXSC 2IUPD 4FA9C 2IURD 3ORVC 2AGLD 4L1QC 2IUQD 2MTAL 3SXTC 2I0SD 4Y5RC 4L3HC 4FA1C 2AH1D 3L4MC 4FA4C 2OJYD 3PXWC 1MAEL 2HJBD 2J56L 3SLEC 3PXTC 3RMZC 2HKMD 1MG2B 3RLMC 2AGYD 1MG3B 2AGXD 2H3XB 2Q7QD 2BBKL 2I0RD 2OIZD 3C75L 1MDAL 4FANC 3L4OC 2AGWD 3RN1C 2H47B 2GC7B 2J55L 2HXCD 2HJ4D 4L3GC 2AGZD 4K3IC 4FB1C 2GC4B 2I0TD 4FA5C 2AH0D 4FAVC 2HKRD 3SJLC 4O1QC 2MADL 2OK4D 1MAFL 2IAAB 2J57K
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2IUV D;  2OK6 D;  3SVW C;  3RN0 C;  3SWS C;  3PXS C;  2IUP D;  4FA9 C;  2IUR D;  3ORV C;  2AGL D;  4L1Q C;  2IUQ D;  2MTA L;  3SXT C;  2I0S D;  4Y5R C;  4L3H C;  4FA1 C;  2AH1 D;  3L4M C;  4FA4 C;  2OJY D;  3PXW C;  1MAE L;  2HJB D;  2J56 L;  3SLE C;  3PXT C;  3RMZ C;  2HKM D;  1MG2 B;  3RLM C;  2AGY D;  1MG3 B;  2AGX D;  2H3X B;  2Q7Q D;  2BBK L;  2I0R D;  2OIZ D;  3C75 L;  1MDA L;  4FAN C;  3L4O C;  2AGW D;  3RN1 C;  2H47 B;  2GC7 B;  2J55 L;  2HXC D;  2HJ4 D;  4L3G C;  2AGZ D;  4K3I C;  4FB1 C;  2GC4 B;  2I0T D;  4FA5 C;  2AH0 D;  4FAV C;  2HKR D;  3SJL C;  4O1Q C;  2MAD L;  2OK4 D;  1MAF L;  2IAA B;  2J57 K; 
#chains in the Genus database with same CATH topology
 2IUV D;  2OK6 D;  3SVW C;  3RN0 C;  3SWS C;  3PXS C;  2IUP D;  4FA9 C;  2IUR D;  3ORV C;  2AGL D;  4L1Q C;  2IUQ D;  2MTA L;  3SXT C;  2I0S D;  4Y5R C;  4L3H C;  4FA1 C;  2AH1 D;  3L4M C;  4FA4 C;  2OJY D;  3PXW C;  1MAE L;  2HJB D;  2J56 L;  3SLE C;  3PXT C;  3RMZ C;  2HKM D;  1MG2 B;  3RLM C;  2AGY D;  1MG3 B;  2AGX D;  2H3X B;  2Q7Q D;  2BBK L;  2I0R D;  2OIZ D;  3C75 L;  1MDA L;  4FAN C;  3L4O C;  2AGW D;  3RN1 C;  2H47 B;  2GC7 B;  2J55 L;  2HXC D;  2HJ4 D;  4L3G C;  2AGZ D;  4K3I C;  4FB1 C;  2GC4 B;  2I0T D;  4FA5 C;  2AH0 D;  4FAV C;  2HKR D;  3SJL C;  4O1Q C;  2MAD L;  2OK4 D;  1MAF L;  2IAA B;  2J57 K; 
#chains in the Genus database with same CATH homology
 2IUV D;  2OK6 D;  3SVW C;  3RN0 C;  3SWS C;  3PXS C;  2IUP D;  4FA9 C;  2IUR D;  3ORV C;  2AGL D;  4L1Q C;  2IUQ D;  2MTA L;  3SXT C;  2I0S D;  4Y5R C;  4L3H C;  4FA1 C;  2AH1 D;  3L4M C;  4FA4 C;  2OJY D;  3PXW C;  1MAE L;  2HJB D;  2J56 L;  3SLE C;  3PXT C;  3RMZ C;  2HKM D;  1MG2 B;  3RLM C;  2AGY D;  1MG3 B;  2AGX D;  2H3X B;  2Q7Q D;  2BBK L;  2I0R D;  2OIZ D;  3C75 L;  1MDA L;  4FAN C;  3L4O C;  2AGW D;  3RN1 C;  2H47 B;  2GC7 B;  2J55 L;  2HXC D;  2HJ4 D;  4L3G C;  2AGZ D;  4K3I C;  4FB1 C;  2GC4 B;  2I0T D;  4FA5 C;  2AH0 D;  4FAV C;  2HKR D;  3SJL C;  4O1Q C;  2MAD L;  2OK4 D;  1MAF L;  2IAA B;  2J57 K; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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