3ORVC

Crystal structure of the y294h-maug/pre-methylamine dehydrogenase complex
Total Genus 32
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
32
sequence length
124
structure length
123
Chain Sequence
TDPRAKWVPQDNDIQACDYWRHCSIDGNICDCSGGSLTNCPPGTKLATASVASCYNPTDGQSYLIAYRDCCGYNVSGRCPCLNTEGELPVYRPEFANDIIWCFGAEDDAMTYHCTISPIVGKA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Methylamine utilization protein mauG
publication title Functional Importance of Tyrosine 294 and the Catalytic Selectivity for the Bis-Fe(IV) State of MauG Revealed by Replacement of This Axial Heme Ligand with Histidine .
pubmed doi rcsb
source organism Paracoccus denitrificans
molecule tags Oxidoreductase/electron transport
total genus 32
structure length 123
sequence length 124
chains with identical sequence E
ec nomenclature ec 1.4.9.1: Methylamine dehydrogenase (amicyanin).
pdb deposition date 2010-09-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
C PF02975 Me-amine-dh_L Methylamine dehydrogenase, L chain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.30.10 Mainly Beta Sandwich Electron Transport Ethylamine Dehydrogenase Methylamine/Aralkylamine dehydrogenase light chain 3orvC00
2OK4D 3L4MC 1MDAL 3L4OC 2J55L 3RMZC 2IURD 4K3IC 4FB1C 2H47B 4FAVC 3RN1C 2BBKL 4L3HC 3RLMC 3C75L 3PXTC 2I0RD 2GC7B 2AGWD 3SJLC 4FANC 3ORVC 2AGLD 2HJBD 2IAAB 2AGYD 2OJYD 3PXSC 4FA4C 2IUPD 4FA1C 4FA9C 2AH1D 2MTAL 2HXCD 2HKMD 1MAEL 2IUVD 2MADL 1MG2B 2OK6D 2HKRD 3PXWC 2I0SD 2GC4B 3SWSC 2AGXD 3SLEC 3SVWC 2HJ4D 2AH0D 3RN0C 4Y5RC 4L3GC 2Q7QD 1MG3B 2J57K 2H3XB 4L1QC 2AGZD 1MAFL 3SXTC 2J56L 2OIZD 4FA5C 4O1QC 2IUQD 2I0TD
chains in the Genus database with same CATH superfamily
2OK4D 3L4MC 1MDAL 3L4OC 2J55L 3RMZC 2IURD 4K3IC 4FB1C 2H47B 4FAVC 3RN1C 2BBKL 4L3HC 3RLMC 3C75L 3PXTC 2I0RD 2GC7B 2AGWD 3SJLC 4FANC 3ORVC 2AGLD 2HJBD 2IAAB 2AGYD 2OJYD 3PXSC 4FA4C 2IUPD 4FA1C 4FA9C 2AH1D 2MTAL 2HXCD 2HKMD 1MAEL 2IUVD 2MADL 1MG2B 2OK6D 2HKRD 3PXWC 2I0SD 2GC4B 3SWSC 2AGXD 3SLEC 3SVWC 2HJ4D 2AH0D 3RN0C 4Y5RC 4L3GC 2Q7QD 1MG3B 2J57K 2H3XB 4L1QC 2AGZD 1MAFL 3SXTC 2J56L 2OIZD 4FA5C 4O1QC 2IUQD 2I0TD
chains in the Genus database with same CATH topology
2OK4D 3L4MC 1MDAL 3L4OC 2J55L 3RMZC 2IURD 4K3IC 4FB1C 2H47B 4FAVC 3RN1C 2BBKL 4L3HC 3RLMC 3C75L 3PXTC 2I0RD 2GC7B 2AGWD 3SJLC 4FANC 3ORVC 2AGLD 2HJBD 2IAAB 2AGYD 2OJYD 3PXSC 4FA4C 2IUPD 4FA1C 4FA9C 2AH1D 2MTAL 2HXCD 2HKMD 1MAEL 2IUVD 2MADL 1MG2B 2OK6D 2HKRD 3PXWC 2I0SD 2GC4B 3SWSC 2AGXD 3SLEC 3SVWC 2HJ4D 2AH0D 3RN0C 4Y5RC 4L3GC 2Q7QD 1MG3B 2J57K 2H3XB 4L1QC 2AGZD 1MAFL 3SXTC 2J56L 2OIZD 4FA5C 4O1QC 2IUQD 2I0TD
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2OK4 D;  3L4M C;  1MDA L;  3L4O C;  2J55 L;  3RMZ C;  2IUR D;  4K3I C;  4FB1 C;  2H47 B;  4FAV C;  3RN1 C;  2BBK L;  4L3H C;  3RLM C;  3C75 L;  3PXT C;  2I0R D;  2GC7 B;  2AGW D;  3SJL C;  4FAN C;  3ORV C;  2AGL D;  2HJB D;  2IAA B;  2AGY D;  2OJY D;  3PXS C;  4FA4 C;  2IUP D;  4FA1 C;  4FA9 C;  2AH1 D;  2MTA L;  2HXC D;  2HKM D;  1MAE L;  2IUV D;  2MAD L;  1MG2 B;  2OK6 D;  2HKR D;  3PXW C;  2I0S D;  2GC4 B;  3SWS C;  2AGX D;  3SLE C;  3SVW C;  2HJ4 D;  2AH0 D;  3RN0 C;  4Y5R C;  4L3G C;  2Q7Q D;  1MG3 B;  2J57 K;  2H3X B;  4L1Q C;  2AGZ D;  1MAF L;  3SXT C;  2J56 L;  2OIZ D;  4FA5 C;  4O1Q C;  2IUQ D;  2I0T D; 
#chains in the Genus database with same CATH topology
 2OK4 D;  3L4M C;  1MDA L;  3L4O C;  2J55 L;  3RMZ C;  2IUR D;  4K3I C;  4FB1 C;  2H47 B;  4FAV C;  3RN1 C;  2BBK L;  4L3H C;  3RLM C;  3C75 L;  3PXT C;  2I0R D;  2GC7 B;  2AGW D;  3SJL C;  4FAN C;  3ORV C;  2AGL D;  2HJB D;  2IAA B;  2AGY D;  2OJY D;  3PXS C;  4FA4 C;  2IUP D;  4FA1 C;  4FA9 C;  2AH1 D;  2MTA L;  2HXC D;  2HKM D;  1MAE L;  2IUV D;  2MAD L;  1MG2 B;  2OK6 D;  2HKR D;  3PXW C;  2I0S D;  2GC4 B;  3SWS C;  2AGX D;  3SLE C;  3SVW C;  2HJ4 D;  2AH0 D;  3RN0 C;  4Y5R C;  4L3G C;  2Q7Q D;  1MG3 B;  2J57 K;  2H3X B;  4L1Q C;  2AGZ D;  1MAF L;  3SXT C;  2J56 L;  2OIZ D;  4FA5 C;  4O1Q C;  2IUQ D;  2I0T D; 
#chains in the Genus database with same CATH homology
 2OK4 D;  3L4M C;  1MDA L;  3L4O C;  2J55 L;  3RMZ C;  2IUR D;  4K3I C;  4FB1 C;  2H47 B;  4FAV C;  3RN1 C;  2BBK L;  4L3H C;  3RLM C;  3C75 L;  3PXT C;  2I0R D;  2GC7 B;  2AGW D;  3SJL C;  4FAN C;  3ORV C;  2AGL D;  2HJB D;  2IAA B;  2AGY D;  2OJY D;  3PXS C;  4FA4 C;  2IUP D;  4FA1 C;  4FA9 C;  2AH1 D;  2MTA L;  2HXC D;  2HKM D;  1MAE L;  2IUV D;  2MAD L;  1MG2 B;  2OK6 D;  2HKR D;  3PXW C;  2I0S D;  2GC4 B;  3SWS C;  2AGX D;  3SLE C;  3SVW C;  2HJ4 D;  2AH0 D;  3RN0 C;  4Y5R C;  4L3G C;  2Q7Q D;  1MG3 B;  2J57 K;  2H3X B;  4L1Q C;  2AGZ D;  1MAF L;  3SXT C;  2J56 L;  2OIZ D;  4FA5 C;  4O1Q C;  2IUQ D;  2I0T D; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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