2I0SD

Crystal structure of aromatic amine dehydrogenase ttq-phenylacetaldehyde adduct
Total Genus 34
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
34
Knots found
sequence length
124
structure length
123
Chain Sequence
HISLNPDLANEDEVNSCDYWRHCAVDGFLCSCCGGTTTTCPPGSTPSPISIGTCHNPHDGKDYLISYHDCCGKTACGRCQCNTQTRERPGYEFFLHNDVNWCMANENSTFHCTTSVLVGLAKN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase
molecule keywords Aromatic amine dehydrogenase
publication title New insights into the reductive half-reaction mechanism of aromatic amine dehydrogenase revealed by reaction with carbinolamine substrates.
pubmed doi rcsb
total genus 34
structure length 123
sequence length 124
chains with identical sequence H
other databases KnotProt 2.0: K
ec nomenclature ec 1.4.9.2: Aralkylamine dehydrogenase (azurin).
pdb deposition date 2006-08-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
D PF02975 Me-amine-dh_L Methylamine dehydrogenase, L chain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.30.10 Mainly Beta Sandwich Electron Transport Ethylamine Dehydrogenase Methylamine/Aralkylamine dehydrogenase light chain 2i0sD00
2AH0D 2H3XB 2HXCD 3C75L 2BBKL 2HKRD 2OJYD 3SVWC 2GC7B 2IUPD 3RLMC 1MAFL 3RN0C 4FA9C 4L1QC 4O1QC 3PXSC 1MG3B 2IUQD 4FAVC 3SXTC 4Y5RC 2HJBD 1MG2B 2AGLD 2J55L 2AGXD 3L4OC 2MADL 2HKMD 2I0RD 3L4MC 2OK6D 4L3GC 2IAAB 2HJ4D 3ORVC 2GC4B 4FA5C 2J57K 4L3HC 2AGZD 2MTAL 3SWSC 4K3IC 2AGWD 4FA4C 3PXTC 1MDAL 2I0SD 2I0TD 2IUVD 2OK4D 3RMZC 2J56L 3PXWC 3SLEC 4FA1C 2AGYD 4FB1C 3SJLC 2AH1D 2IURD 2OIZD 2Q7QD 1MAEL 3RN1C 4FANC 2H47B
chains in the Genus database with same CATH superfamily
2AH0D 2H3XB 2HXCD 3C75L 2BBKL 2HKRD 2OJYD 3SVWC 2GC7B 2IUPD 3RLMC 1MAFL 3RN0C 4FA9C 4L1QC 4O1QC 3PXSC 1MG3B 2IUQD 4FAVC 3SXTC 4Y5RC 2HJBD 1MG2B 2AGLD 2J55L 2AGXD 3L4OC 2MADL 2HKMD 2I0RD 3L4MC 2OK6D 4L3GC 2IAAB 2HJ4D 3ORVC 2GC4B 4FA5C 2J57K 4L3HC 2AGZD 2MTAL 3SWSC 4K3IC 2AGWD 4FA4C 3PXTC 1MDAL 2I0SD 2I0TD 2IUVD 2OK4D 3RMZC 2J56L 3PXWC 3SLEC 4FA1C 2AGYD 4FB1C 3SJLC 2AH1D 2IURD 2OIZD 2Q7QD 1MAEL 3RN1C 4FANC 2H47B
chains in the Genus database with same CATH topology
2AH0D 2H3XB 2HXCD 3C75L 2BBKL 2HKRD 2OJYD 3SVWC 2GC7B 2IUPD 3RLMC 1MAFL 3RN0C 4FA9C 4L1QC 4O1QC 3PXSC 1MG3B 2IUQD 4FAVC 3SXTC 4Y5RC 2HJBD 1MG2B 2AGLD 2J55L 2AGXD 3L4OC 2MADL 2HKMD 2I0RD 3L4MC 2OK6D 4L3GC 2IAAB 2HJ4D 3ORVC 2GC4B 4FA5C 2J57K 4L3HC 2AGZD 2MTAL 3SWSC 4K3IC 2AGWD 4FA4C 3PXTC 1MDAL 2I0SD 2I0TD 2IUVD 2OK4D 3RMZC 2J56L 3PXWC 3SLEC 4FA1C 2AGYD 4FB1C 3SJLC 2AH1D 2IURD 2OIZD 2Q7QD 1MAEL 3RN1C 4FANC 2H47B
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2AH0 D;  2H3X B;  2HXC D;  3C75 L;  2BBK L;  2HKR D;  2OJY D;  3SVW C;  2GC7 B;  2IUP D;  3RLM C;  1MAF L;  3RN0 C;  4FA9 C;  4L1Q C;  4O1Q C;  3PXS C;  1MG3 B;  2IUQ D;  4FAV C;  3SXT C;  4Y5R C;  2HJB D;  1MG2 B;  2AGL D;  2J55 L;  2AGX D;  3L4O C;  2MAD L;  2HKM D;  2I0R D;  3L4M C;  2OK6 D;  4L3G C;  2IAA B;  2HJ4 D;  3ORV C;  2GC4 B;  4FA5 C;  2J57 K;  4L3H C;  2AGZ D;  2MTA L;  3SWS C;  4K3I C;  2AGW D;  4FA4 C;  3PXT C;  1MDA L;  2I0S D;  2I0T D;  2IUV D;  2OK4 D;  3RMZ C;  2J56 L;  3PXW C;  3SLE C;  4FA1 C;  2AGY D;  4FB1 C;  3SJL C;  2AH1 D;  2IUR D;  2OIZ D;  2Q7Q D;  1MAE L;  3RN1 C;  4FAN C;  2H47 B; 
#chains in the Genus database with same CATH topology
 2AH0 D;  2H3X B;  2HXC D;  3C75 L;  2BBK L;  2HKR D;  2OJY D;  3SVW C;  2GC7 B;  2IUP D;  3RLM C;  1MAF L;  3RN0 C;  4FA9 C;  4L1Q C;  4O1Q C;  3PXS C;  1MG3 B;  2IUQ D;  4FAV C;  3SXT C;  4Y5R C;  2HJB D;  1MG2 B;  2AGL D;  2J55 L;  2AGX D;  3L4O C;  2MAD L;  2HKM D;  2I0R D;  3L4M C;  2OK6 D;  4L3G C;  2IAA B;  2HJ4 D;  3ORV C;  2GC4 B;  4FA5 C;  2J57 K;  4L3H C;  2AGZ D;  2MTA L;  3SWS C;  4K3I C;  2AGW D;  4FA4 C;  3PXT C;  1MDA L;  2I0S D;  2I0T D;  2IUV D;  2OK4 D;  3RMZ C;  2J56 L;  3PXW C;  3SLE C;  4FA1 C;  2AGY D;  4FB1 C;  3SJL C;  2AH1 D;  2IUR D;  2OIZ D;  2Q7Q D;  1MAE L;  3RN1 C;  4FAN C;  2H47 B; 
#chains in the Genus database with same CATH homology
 2AH0 D;  2H3X B;  2HXC D;  3C75 L;  2BBK L;  2HKR D;  2OJY D;  3SVW C;  2GC7 B;  2IUP D;  3RLM C;  1MAF L;  3RN0 C;  4FA9 C;  4L1Q C;  4O1Q C;  3PXS C;  1MG3 B;  2IUQ D;  4FAV C;  3SXT C;  4Y5R C;  2HJB D;  1MG2 B;  2AGL D;  2J55 L;  2AGX D;  3L4O C;  2MAD L;  2HKM D;  2I0R D;  3L4M C;  2OK6 D;  4L3G C;  2IAA B;  2HJ4 D;  3ORV C;  2GC4 B;  4FA5 C;  2J57 K;  4L3H C;  2AGZ D;  2MTA L;  3SWS C;  4K3I C;  2AGW D;  4FA4 C;  3PXT C;  1MDA L;  2I0S D;  2I0T D;  2IUV D;  2OK4 D;  3RMZ C;  2J56 L;  3PXW C;  3SLE C;  4FA1 C;  2AGY D;  4FB1 C;  3SJL C;  2AH1 D;  2IUR D;  2OIZ D;  2Q7Q D;  1MAE L;  3RN1 C;  4FAN C;  2H47 B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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