2AGYD

Crystal structure of the schiff base intermediate in the reductive half-reaction of aromatic amine dehydrogenase (aadh) with tryptamine. monoclinic form
Total Genus 27
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
27
Knots found
sequence length
109
structure length
108
Chain Sequence
EVNSCDYWRHCAVDGFLCSCCGGTTTTCPPGSTPSPISIGTCHNPHDGKDYLISYHDCCGKTACGRCQCNTQTRERPGYEFFLHNDVNWCMANENSTFHCTTSVLVGL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Aromatic amine dehydrogenase
publication title Atomic description of an enzyme reaction dominated by proton tunneling
pubmed doi rcsb
molecule tags Oxidoreductase
total genus 27
structure length 108
sequence length 109
chains with identical sequence H
other databases KnotProt 2.0: K
ec nomenclature ec 1.4.9.2: Aralkylamine dehydrogenase (azurin).
pdb deposition date 2005-07-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
D PF02975 Me-amine-dh_L Methylamine dehydrogenase, L chain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.30.10 Mainly Beta Sandwich Electron Transport Ethylamine Dehydrogenase Methylamine/Aralkylamine dehydrogenase light chain 2agyD00
3C75L 2IUPD 2HKRD 2Q7QD 2AGLD 3ORVC 2AGXD 2J56L 2J57K 4FA5C 2GC4B 4L3HC 2HJ4D 4K3IC 3SXTC 4FAVC 4Y5RC 2GC7B 4FA4C 3SWSC 3L4MC 2MADL 4FA9C 2H47B 1MAFL 1MG2B 2IUQD 2IURD 2IUVD 3L4OC 3SVWC 2I0SD 2OJYD 2J55L 2OK4D 3PXTC 3SJLC 2HJBD 2AGWD 4L1QC 3RN1C 4FB1C 2I0TD 2OK6D 4FANC 4L3GC 4FA1C 3RN0C 3SLEC 2IAAB 2OIZD 3RMZC 2H3XB 1MG3B 2BBKL 1MAEL 1MDAL 2AGZD 3PXSC 2MTAL 2AH0D 3PXWC 2AH1D 2I0RD 2HKMD 2AGYD 4O1QC 2HXCD 3RLMC
chains in the Genus database with same CATH superfamily
3C75L 2IUPD 2HKRD 2Q7QD 2AGLD 3ORVC 2AGXD 2J56L 2J57K 4FA5C 2GC4B 4L3HC 2HJ4D 4K3IC 3SXTC 4FAVC 4Y5RC 2GC7B 4FA4C 3SWSC 3L4MC 2MADL 4FA9C 2H47B 1MAFL 1MG2B 2IUQD 2IURD 2IUVD 3L4OC 3SVWC 2I0SD 2OJYD 2J55L 2OK4D 3PXTC 3SJLC 2HJBD 2AGWD 4L1QC 3RN1C 4FB1C 2I0TD 2OK6D 4FANC 4L3GC 4FA1C 3RN0C 3SLEC 2IAAB 2OIZD 3RMZC 2H3XB 1MG3B 2BBKL 1MAEL 1MDAL 2AGZD 3PXSC 2MTAL 2AH0D 3PXWC 2AH1D 2I0RD 2HKMD 2AGYD 4O1QC 2HXCD 3RLMC
chains in the Genus database with same CATH topology
3C75L 2IUPD 2HKRD 2Q7QD 2AGLD 3ORVC 2AGXD 2J56L 2J57K 4FA5C 2GC4B 4L3HC 2HJ4D 4K3IC 3SXTC 4FAVC 4Y5RC 2GC7B 4FA4C 3SWSC 3L4MC 2MADL 4FA9C 2H47B 1MAFL 1MG2B 2IUQD 2IURD 2IUVD 3L4OC 3SVWC 2I0SD 2OJYD 2J55L 2OK4D 3PXTC 3SJLC 2HJBD 2AGWD 4L1QC 3RN1C 4FB1C 2I0TD 2OK6D 4FANC 4L3GC 4FA1C 3RN0C 3SLEC 2IAAB 2OIZD 3RMZC 2H3XB 1MG3B 2BBKL 1MAEL 1MDAL 2AGZD 3PXSC 2MTAL 2AH0D 3PXWC 2AH1D 2I0RD 2HKMD 2AGYD 4O1QC 2HXCD 3RLMC
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3C75 L;  2IUP D;  2HKR D;  2Q7Q D;  2AGL D;  3ORV C;  2AGX D;  2J56 L;  2J57 K;  4FA5 C;  2GC4 B;  4L3H C;  2HJ4 D;  4K3I C;  3SXT C;  4FAV C;  4Y5R C;  2GC7 B;  4FA4 C;  3SWS C;  3L4M C;  2MAD L;  4FA9 C;  2H47 B;  1MAF L;  1MG2 B;  2IUQ D;  2IUR D;  2IUV D;  3L4O C;  3SVW C;  2I0S D;  2OJY D;  2J55 L;  2OK4 D;  3PXT C;  3SJL C;  2HJB D;  2AGW D;  4L1Q C;  3RN1 C;  4FB1 C;  2I0T D;  2OK6 D;  4FAN C;  4L3G C;  4FA1 C;  3RN0 C;  3SLE C;  2IAA B;  2OIZ D;  3RMZ C;  2H3X B;  1MG3 B;  2BBK L;  1MAE L;  1MDA L;  2AGZ D;  3PXS C;  2MTA L;  2AH0 D;  3PXW C;  2AH1 D;  2I0R D;  2HKM D;  2AGY D;  4O1Q C;  2HXC D;  3RLM C; 
#chains in the Genus database with same CATH topology
 3C75 L;  2IUP D;  2HKR D;  2Q7Q D;  2AGL D;  3ORV C;  2AGX D;  2J56 L;  2J57 K;  4FA5 C;  2GC4 B;  4L3H C;  2HJ4 D;  4K3I C;  3SXT C;  4FAV C;  4Y5R C;  2GC7 B;  4FA4 C;  3SWS C;  3L4M C;  2MAD L;  4FA9 C;  2H47 B;  1MAF L;  1MG2 B;  2IUQ D;  2IUR D;  2IUV D;  3L4O C;  3SVW C;  2I0S D;  2OJY D;  2J55 L;  2OK4 D;  3PXT C;  3SJL C;  2HJB D;  2AGW D;  4L1Q C;  3RN1 C;  4FB1 C;  2I0T D;  2OK6 D;  4FAN C;  4L3G C;  4FA1 C;  3RN0 C;  3SLE C;  2IAA B;  2OIZ D;  3RMZ C;  2H3X B;  1MG3 B;  2BBK L;  1MAE L;  1MDA L;  2AGZ D;  3PXS C;  2MTA L;  2AH0 D;  3PXW C;  2AH1 D;  2I0R D;  2HKM D;  2AGY D;  4O1Q C;  2HXC D;  3RLM C; 
#chains in the Genus database with same CATH homology
 3C75 L;  2IUP D;  2HKR D;  2Q7Q D;  2AGL D;  3ORV C;  2AGX D;  2J56 L;  2J57 K;  4FA5 C;  2GC4 B;  4L3H C;  2HJ4 D;  4K3I C;  3SXT C;  4FAV C;  4Y5R C;  2GC7 B;  4FA4 C;  3SWS C;  3L4M C;  2MAD L;  4FA9 C;  2H47 B;  1MAF L;  1MG2 B;  2IUQ D;  2IUR D;  2IUV D;  3L4O C;  3SVW C;  2I0S D;  2OJY D;  2J55 L;  2OK4 D;  3PXT C;  3SJL C;  2HJB D;  2AGW D;  4L1Q C;  3RN1 C;  4FB1 C;  2I0T D;  2OK6 D;  4FAN C;  4L3G C;  4FA1 C;  3RN0 C;  3SLE C;  2IAA B;  2OIZ D;  3RMZ C;  2H3X B;  1MG3 B;  2BBK L;  1MAE L;  1MDA L;  2AGZ D;  3PXS C;  2MTA L;  2AH0 D;  3PXW C;  2AH1 D;  2I0R D;  2HKM D;  2AGY D;  4O1Q C;  2HXC D;  3RLM C; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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