2MTAL

Crystal structure of a ternary electron transfer complex between methylamine dehydrogenase, amicyanin and a c-type cytochrome
Total Genus 29
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
29
Knots found
sequence length
125
structure length
124
Chain Sequence
TDPRAKWVPQDNDIQACDYWRHCSIDGNICDCSGGSLTNCPPGTKLATASVASCYNPTDGQSYLIAYRDCCGYNVSGRCPCLNTEGELPVYRPEFANDIIWCFGAEDDAMTYHCTISPIVGKAS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Electron transport
molecule keywords METHYLAMINE DEHYDROGENASE (HEAVY SUBUNIT)
publication title Structure of an electron transfer complex: methylamine dehydrogenase, amicyanin, and cytochrome c551i.
pubmed rcsb
source organism Paracoccus denitrificans
total genus 29
structure length 124
sequence length 125
other databases KnotProt 2.0: K
ec nomenclature ec 1.4.9.1: Methylamine dehydrogenase (amicyanin).
pdb deposition date 1993-10-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
L PF02975 Me-amine-dh_L Methylamine dehydrogenase, L chain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.30.10 Mainly Beta Sandwich Electron Transport Ethylamine Dehydrogenase Methylamine/Aralkylamine dehydrogenase light chain 2mtaL00
2H3XB 2H47B 4L3HC 3SXTC 2J57K 1MG3B 3SWSC 4O1QC 1MG2B 4L1QC 2MADL 3PXWC 2HJBD 2AGWD 2AH0D 1MAEL 2HXCD 2OIZD 3PXTC 4K3IC 3RMZC 3RN0C 4FA4C 4L3GC 2HKMD 2OJYD 3SJLC 4FA5C 2GC7B 2I0TD 2AH1D 2IUVD 2GC4B 3ORVC 2I0RD 4FA1C 2BBKL 3L4OC 2IUPD 2J55L 1MDAL 2AGZD 4FA9C 3PXSC 4FANC 2AGYD 3RLMC 4Y5RC 2IAAB 3SLEC 4FAVC 2HKRD 4FB1C 2I0SD 2AGLD 1MAFL 2AGXD 2IUQD 2Q7QD 3C75L 3L4MC 3RN1C 2J56L 2MTAL 2OK6D 2OK4D 2IURD 2HJ4D 3SVWC
chains in the Genus database with same CATH superfamily
2H3XB 2H47B 4L3HC 3SXTC 2J57K 1MG3B 3SWSC 4O1QC 1MG2B 4L1QC 2MADL 3PXWC 2HJBD 2AGWD 2AH0D 1MAEL 2HXCD 2OIZD 3PXTC 4K3IC 3RMZC 3RN0C 4FA4C 4L3GC 2HKMD 2OJYD 3SJLC 4FA5C 2GC7B 2I0TD 2AH1D 2IUVD 2GC4B 3ORVC 2I0RD 4FA1C 2BBKL 3L4OC 2IUPD 2J55L 1MDAL 2AGZD 4FA9C 3PXSC 4FANC 2AGYD 3RLMC 4Y5RC 2IAAB 3SLEC 4FAVC 2HKRD 4FB1C 2I0SD 2AGLD 1MAFL 2AGXD 2IUQD 2Q7QD 3C75L 3L4MC 3RN1C 2J56L 2MTAL 2OK6D 2OK4D 2IURD 2HJ4D 3SVWC
chains in the Genus database with same CATH topology
2H3XB 2H47B 4L3HC 3SXTC 2J57K 1MG3B 3SWSC 4O1QC 1MG2B 4L1QC 2MADL 3PXWC 2HJBD 2AGWD 2AH0D 1MAEL 2HXCD 2OIZD 3PXTC 4K3IC 3RMZC 3RN0C 4FA4C 4L3GC 2HKMD 2OJYD 3SJLC 4FA5C 2GC7B 2I0TD 2AH1D 2IUVD 2GC4B 3ORVC 2I0RD 4FA1C 2BBKL 3L4OC 2IUPD 2J55L 1MDAL 2AGZD 4FA9C 3PXSC 4FANC 2AGYD 3RLMC 4Y5RC 2IAAB 3SLEC 4FAVC 2HKRD 4FB1C 2I0SD 2AGLD 1MAFL 2AGXD 2IUQD 2Q7QD 3C75L 3L4MC 3RN1C 2J56L 2MTAL 2OK6D 2OK4D 2IURD 2HJ4D 3SVWC
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2H3X B;  2H47 B;  4L3H C;  3SXT C;  2J57 K;  1MG3 B;  3SWS C;  4O1Q C;  1MG2 B;  4L1Q C;  2MAD L;  3PXW C;  2HJB D;  2AGW D;  2AH0 D;  1MAE L;  2HXC D;  2OIZ D;  3PXT C;  4K3I C;  3RMZ C;  3RN0 C;  4FA4 C;  4L3G C;  2HKM D;  2OJY D;  3SJL C;  4FA5 C;  2GC7 B;  2I0T D;  2AH1 D;  2IUV D;  2GC4 B;  3ORV C;  2I0R D;  4FA1 C;  2BBK L;  3L4O C;  2IUP D;  2J55 L;  1MDA L;  2AGZ D;  4FA9 C;  3PXS C;  4FAN C;  2AGY D;  3RLM C;  4Y5R C;  2IAA B;  3SLE C;  4FAV C;  2HKR D;  4FB1 C;  2I0S D;  2AGL D;  1MAF L;  2AGX D;  2IUQ D;  2Q7Q D;  3C75 L;  3L4M C;  3RN1 C;  2J56 L;  2MTA L;  2OK6 D;  2OK4 D;  2IUR D;  2HJ4 D;  3SVW C; 
#chains in the Genus database with same CATH topology
 2H3X B;  2H47 B;  4L3H C;  3SXT C;  2J57 K;  1MG3 B;  3SWS C;  4O1Q C;  1MG2 B;  4L1Q C;  2MAD L;  3PXW C;  2HJB D;  2AGW D;  2AH0 D;  1MAE L;  2HXC D;  2OIZ D;  3PXT C;  4K3I C;  3RMZ C;  3RN0 C;  4FA4 C;  4L3G C;  2HKM D;  2OJY D;  3SJL C;  4FA5 C;  2GC7 B;  2I0T D;  2AH1 D;  2IUV D;  2GC4 B;  3ORV C;  2I0R D;  4FA1 C;  2BBK L;  3L4O C;  2IUP D;  2J55 L;  1MDA L;  2AGZ D;  4FA9 C;  3PXS C;  4FAN C;  2AGY D;  3RLM C;  4Y5R C;  2IAA B;  3SLE C;  4FAV C;  2HKR D;  4FB1 C;  2I0S D;  2AGL D;  1MAF L;  2AGX D;  2IUQ D;  2Q7Q D;  3C75 L;  3L4M C;  3RN1 C;  2J56 L;  2MTA L;  2OK6 D;  2OK4 D;  2IUR D;  2HJ4 D;  3SVW C; 
#chains in the Genus database with same CATH homology
 2H3X B;  2H47 B;  4L3H C;  3SXT C;  2J57 K;  1MG3 B;  3SWS C;  4O1Q C;  1MG2 B;  4L1Q C;  2MAD L;  3PXW C;  2HJB D;  2AGW D;  2AH0 D;  1MAE L;  2HXC D;  2OIZ D;  3PXT C;  4K3I C;  3RMZ C;  3RN0 C;  4FA4 C;  4L3G C;  2HKM D;  2OJY D;  3SJL C;  4FA5 C;  2GC7 B;  2I0T D;  2AH1 D;  2IUV D;  2GC4 B;  3ORV C;  2I0R D;  4FA1 C;  2BBK L;  3L4O C;  2IUP D;  2J55 L;  1MDA L;  2AGZ D;  4FA9 C;  3PXS C;  4FAN C;  2AGY D;  3RLM C;  4Y5R C;  2IAA B;  3SLE C;  4FAV C;  2HKR D;  4FB1 C;  2I0S D;  2AGL D;  1MAF L;  2AGX D;  2IUQ D;  2Q7Q D;  3C75 L;  3L4M C;  3RN1 C;  2J56 L;  2MTA L;  2OK6 D;  2OK4 D;  2IUR D;  2HJ4 D;  3SVW C; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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