4K3IC

Crystal structure of the quinol form of methylamine dehydrogenase in complex with the diferrous form of maug, c2 space group
Total Genus 31
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
31
Knots found
sequence length
125
structure length
124
Chain Sequence
b'TDPRAKWVPQDNDIQACDYWRHCSIDGNICDCSGGSLTNCPPGTKLATASVASCYNPTDGQSYLIAYRDCCGYNVSGRCPCLNTEGELPVYRPEFANDIIWCFGAEDDAMTYHCTISPIVGKAS'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Methylamine utilization protein MauG
publication title Structures of MauG in complex with quinol and quinone MADH.
pubmed doi rcsb
source organism Paracoccus denitrificans
molecule tags Oxidoreductase
total genus 31
structure length 124
sequence length 125
chains with identical sequence E
other databases KnotProt 2.0: K
ec nomenclature ec 1.4.9.1: Methylamine dehydrogenase (amicyanin).
pdb deposition date 2013-04-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
C PF02975 Me-amine-dh_L Methylamine dehydrogenase, L chain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.30.10 Mainly Beta Sandwich Electron Transport Ethylamine Dehydrogenase Methylamine/Aralkylamine dehydrogenase light chain 4k3iC00
4FA1C 2IUPD 2IUVD 2Q7QD 3L4OC 3PXTC 2MADL 4Y5RC 1MG3B 2HKRD 2BBKL 4FAVC 1MG2B 2GC7B 2I0RD 3ORVC 3RN0C 3SWSC 3PXWC 2HXCD 2I0TD 2H3XB 1MDAL 2IAAB 2I0SD 2AGWD 3SJLC 2AH0D 4O1QC 3SVWC 2J56L 2GC4B 1MAFL 2OIZD 3PXSC 2MTAL 4K3IC 4FA4C 2HKMD 4FA5C 4L3HC 2AGZD 4FB1C 2IURD 3C75L 2AGXD 3RMZC 2J55L 2OJYD 2AGYD 1MAEL 2AGLD 2H47B 2HJBD 2HJ4D 2IUQD 2OK6D 3L4MC 4FANC 4L1QC 3RLMC 3RN1C 3SXTC 2J57K 4FA9C 4L3GC 3SLEC 2AH1D 2OK4D
chains in the Genus database with same CATH superfamily
4FA1C 2IUPD 2IUVD 2Q7QD 3L4OC 3PXTC 2MADL 4Y5RC 1MG3B 2HKRD 2BBKL 4FAVC 1MG2B 2GC7B 2I0RD 3ORVC 3RN0C 3SWSC 3PXWC 2HXCD 2I0TD 2H3XB 1MDAL 2IAAB 2I0SD 2AGWD 3SJLC 2AH0D 4O1QC 3SVWC 2J56L 2GC4B 1MAFL 2OIZD 3PXSC 2MTAL 4K3IC 4FA4C 2HKMD 4FA5C 4L3HC 2AGZD 4FB1C 2IURD 3C75L 2AGXD 3RMZC 2J55L 2OJYD 2AGYD 1MAEL 2AGLD 2H47B 2HJBD 2HJ4D 2IUQD 2OK6D 3L4MC 4FANC 4L1QC 3RLMC 3RN1C 3SXTC 2J57K 4FA9C 4L3GC 3SLEC 2AH1D 2OK4D
chains in the Genus database with same CATH topology
4FA1C 2IUPD 2IUVD 2Q7QD 3L4OC 3PXTC 2MADL 4Y5RC 1MG3B 2HKRD 2BBKL 4FAVC 1MG2B 2GC7B 2I0RD 3ORVC 3RN0C 3SWSC 3PXWC 2HXCD 2I0TD 2H3XB 1MDAL 2IAAB 2I0SD 2AGWD 3SJLC 2AH0D 4O1QC 3SVWC 2J56L 2GC4B 1MAFL 2OIZD 3PXSC 2MTAL 4K3IC 4FA4C 2HKMD 4FA5C 4L3HC 2AGZD 4FB1C 2IURD 3C75L 2AGXD 3RMZC 2J55L 2OJYD 2AGYD 1MAEL 2AGLD 2H47B 2HJBD 2HJ4D 2IUQD 2OK6D 3L4MC 4FANC 4L1QC 3RLMC 3RN1C 3SXTC 2J57K 4FA9C 4L3GC 3SLEC 2AH1D 2OK4D
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4FA1 C;  2IUP D;  2IUV D;  2Q7Q D;  3L4O C;  3PXT C;  2MAD L;  4Y5R C;  1MG3 B;  2HKR D;  2BBK L;  4FAV C;  1MG2 B;  2GC7 B;  2I0R D;  3ORV C;  3RN0 C;  3SWS C;  3PXW C;  2HXC D;  2I0T D;  2H3X B;  1MDA L;  2IAA B;  2I0S D;  2AGW D;  3SJL C;  2AH0 D;  4O1Q C;  3SVW C;  2J56 L;  2GC4 B;  1MAF L;  2OIZ D;  3PXS C;  2MTA L;  4K3I C;  4FA4 C;  2HKM D;  4FA5 C;  4L3H C;  2AGZ D;  4FB1 C;  2IUR D;  3C75 L;  2AGX D;  3RMZ C;  2J55 L;  2OJY D;  2AGY D;  1MAE L;  2AGL D;  2H47 B;  2HJB D;  2HJ4 D;  2IUQ D;  2OK6 D;  3L4M C;  4FAN C;  4L1Q C;  3RLM C;  3RN1 C;  3SXT C;  2J57 K;  4FA9 C;  4L3G C;  3SLE C;  2AH1 D;  2OK4 D; 
#chains in the Genus database with same CATH topology
 4FA1 C;  2IUP D;  2IUV D;  2Q7Q D;  3L4O C;  3PXT C;  2MAD L;  4Y5R C;  1MG3 B;  2HKR D;  2BBK L;  4FAV C;  1MG2 B;  2GC7 B;  2I0R D;  3ORV C;  3RN0 C;  3SWS C;  3PXW C;  2HXC D;  2I0T D;  2H3X B;  1MDA L;  2IAA B;  2I0S D;  2AGW D;  3SJL C;  2AH0 D;  4O1Q C;  3SVW C;  2J56 L;  2GC4 B;  1MAF L;  2OIZ D;  3PXS C;  2MTA L;  4K3I C;  4FA4 C;  2HKM D;  4FA5 C;  4L3H C;  2AGZ D;  4FB1 C;  2IUR D;  3C75 L;  2AGX D;  3RMZ C;  2J55 L;  2OJY D;  2AGY D;  1MAE L;  2AGL D;  2H47 B;  2HJB D;  2HJ4 D;  2IUQ D;  2OK6 D;  3L4M C;  4FAN C;  4L1Q C;  3RLM C;  3RN1 C;  3SXT C;  2J57 K;  4FA9 C;  4L3G C;  3SLE C;  2AH1 D;  2OK4 D; 
#chains in the Genus database with same CATH homology
 4FA1 C;  2IUP D;  2IUV D;  2Q7Q D;  3L4O C;  3PXT C;  2MAD L;  4Y5R C;  1MG3 B;  2HKR D;  2BBK L;  4FAV C;  1MG2 B;  2GC7 B;  2I0R D;  3ORV C;  3RN0 C;  3SWS C;  3PXW C;  2HXC D;  2I0T D;  2H3X B;  1MDA L;  2IAA B;  2I0S D;  2AGW D;  3SJL C;  2AH0 D;  4O1Q C;  3SVW C;  2J56 L;  2GC4 B;  1MAF L;  2OIZ D;  3PXS C;  2MTA L;  4K3I C;  4FA4 C;  2HKM D;  4FA5 C;  4L3H C;  2AGZ D;  4FB1 C;  2IUR D;  3C75 L;  2AGX D;  3RMZ C;  2J55 L;  2OJY D;  2AGY D;  1MAE L;  2AGL D;  2H47 B;  2HJB D;  2HJ4 D;  2IUQ D;  2OK6 D;  3L4M C;  4FAN C;  4L1Q C;  3RLM C;  3RN1 C;  3SXT C;  2J57 K;  4FA9 C;  4L3G C;  3SLE C;  2AH1 D;  2OK4 D; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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