2J56L

X-ray reduced paraccocus denitrificans methylamine dehydrogenase n- semiquinone in complex with amicyanin.
Total Genus 31
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
31
Knots found
sequence length
125
structure length
124
Chain Sequence
TDPRAKWVPQDNDIQACDYWRHCSIDGNICDCSGGSLTNCPPGTKLATASVASCYNPTDGQSYLIAYRDCCGYNVSGRCPCLNTEGELPVYRPEFANDIIWCFGAEDDAMTYHCTISPIVGKAS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase
publication title Tracking X-Ray-Derived Redox Changes in Crystals of a Methylamine Dehydrogenase/Amicyanin Complex Using Single-Crystal Uv/Vis Microspectrophotometry.
pubmed doi rcsb
molecule keywords AMICYANIN
total genus 31
structure length 124
sequence length 125
chains with identical sequence M
other databases KnotProt 2.0: K
ec nomenclature ec 1.4.9.1: Methylamine dehydrogenase (amicyanin).
pdb deposition date 2006-09-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
L PF02975 Me-amine-dh_L Methylamine dehydrogenase, L chain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.30.10 Mainly Beta Sandwich Electron Transport Ethylamine Dehydrogenase Methylamine/Aralkylamine dehydrogenase light chain 2j56L00
2IUQD 2Q7QD 3RLMC 4L3HC 1MDAL 2BBKL 4FANC 2I0TD 3PXWC 4FA4C 2AGXD 2HKRD 2H47B 4FB1C 2HKMD 2MTAL 2AGLD 2IUVD 2HXCD 3RMZC 1MAFL 3L4OC 2H3XB 2HJ4D 1MAEL 2AGWD 3RN0C 3C75L 3SWSC 3SXTC 2GC4B 2J57K 2AH0D 3RN1C 3PXTC 2AGZD 3L4MC 3ORVC 2I0SD 2J55L 1MG3B 2IURD 1MG2B 2HJBD 2MADL 2OK6D 2OIZD 3PXSC 4O1QC 3SJLC 3SVWC 2OK4D 4L1QC 2AGYD 4FA1C 4FA9C 4K3IC 2AH1D 4L3GC 2GC7B 3SLEC 2J56L 4FA5C 4FAVC 2I0RD 2IUPD 2IAAB 2OJYD 4Y5RC
chains in the Genus database with same CATH superfamily
2IUQD 2Q7QD 3RLMC 4L3HC 1MDAL 2BBKL 4FANC 2I0TD 3PXWC 4FA4C 2AGXD 2HKRD 2H47B 4FB1C 2HKMD 2MTAL 2AGLD 2IUVD 2HXCD 3RMZC 1MAFL 3L4OC 2H3XB 2HJ4D 1MAEL 2AGWD 3RN0C 3C75L 3SWSC 3SXTC 2GC4B 2J57K 2AH0D 3RN1C 3PXTC 2AGZD 3L4MC 3ORVC 2I0SD 2J55L 1MG3B 2IURD 1MG2B 2HJBD 2MADL 2OK6D 2OIZD 3PXSC 4O1QC 3SJLC 3SVWC 2OK4D 4L1QC 2AGYD 4FA1C 4FA9C 4K3IC 2AH1D 4L3GC 2GC7B 3SLEC 2J56L 4FA5C 4FAVC 2I0RD 2IUPD 2IAAB 2OJYD 4Y5RC
chains in the Genus database with same CATH topology
2IUQD 2Q7QD 3RLMC 4L3HC 1MDAL 2BBKL 4FANC 2I0TD 3PXWC 4FA4C 2AGXD 2HKRD 2H47B 4FB1C 2HKMD 2MTAL 2AGLD 2IUVD 2HXCD 3RMZC 1MAFL 3L4OC 2H3XB 2HJ4D 1MAEL 2AGWD 3RN0C 3C75L 3SWSC 3SXTC 2GC4B 2J57K 2AH0D 3RN1C 3PXTC 2AGZD 3L4MC 3ORVC 2I0SD 2J55L 1MG3B 2IURD 1MG2B 2HJBD 2MADL 2OK6D 2OIZD 3PXSC 4O1QC 3SJLC 3SVWC 2OK4D 4L1QC 2AGYD 4FA1C 4FA9C 4K3IC 2AH1D 4L3GC 2GC7B 3SLEC 2J56L 4FA5C 4FAVC 2I0RD 2IUPD 2IAAB 2OJYD 4Y5RC
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2IUQ D;  2Q7Q D;  3RLM C;  4L3H C;  1MDA L;  2BBK L;  4FAN C;  2I0T D;  3PXW C;  4FA4 C;  2AGX D;  2HKR D;  2H47 B;  4FB1 C;  2HKM D;  2MTA L;  2AGL D;  2IUV D;  2HXC D;  3RMZ C;  1MAF L;  3L4O C;  2H3X B;  2HJ4 D;  1MAE L;  2AGW D;  3RN0 C;  3C75 L;  3SWS C;  3SXT C;  2GC4 B;  2J57 K;  2AH0 D;  3RN1 C;  3PXT C;  2AGZ D;  3L4M C;  3ORV C;  2I0S D;  2J55 L;  1MG3 B;  2IUR D;  1MG2 B;  2HJB D;  2MAD L;  2OK6 D;  2OIZ D;  3PXS C;  4O1Q C;  3SJL C;  3SVW C;  2OK4 D;  4L1Q C;  2AGY D;  4FA1 C;  4FA9 C;  4K3I C;  2AH1 D;  4L3G C;  2GC7 B;  3SLE C;  2J56 L;  4FA5 C;  4FAV C;  2I0R D;  2IUP D;  2IAA B;  2OJY D;  4Y5R C; 
#chains in the Genus database with same CATH topology
 2IUQ D;  2Q7Q D;  3RLM C;  4L3H C;  1MDA L;  2BBK L;  4FAN C;  2I0T D;  3PXW C;  4FA4 C;  2AGX D;  2HKR D;  2H47 B;  4FB1 C;  2HKM D;  2MTA L;  2AGL D;  2IUV D;  2HXC D;  3RMZ C;  1MAF L;  3L4O C;  2H3X B;  2HJ4 D;  1MAE L;  2AGW D;  3RN0 C;  3C75 L;  3SWS C;  3SXT C;  2GC4 B;  2J57 K;  2AH0 D;  3RN1 C;  3PXT C;  2AGZ D;  3L4M C;  3ORV C;  2I0S D;  2J55 L;  1MG3 B;  2IUR D;  1MG2 B;  2HJB D;  2MAD L;  2OK6 D;  2OIZ D;  3PXS C;  4O1Q C;  3SJL C;  3SVW C;  2OK4 D;  4L1Q C;  2AGY D;  4FA1 C;  4FA9 C;  4K3I C;  2AH1 D;  4L3G C;  2GC7 B;  3SLE C;  2J56 L;  4FA5 C;  4FAV C;  2I0R D;  2IUP D;  2IAA B;  2OJY D;  4Y5R C; 
#chains in the Genus database with same CATH homology
 2IUQ D;  2Q7Q D;  3RLM C;  4L3H C;  1MDA L;  2BBK L;  4FAN C;  2I0T D;  3PXW C;  4FA4 C;  2AGX D;  2HKR D;  2H47 B;  4FB1 C;  2HKM D;  2MTA L;  2AGL D;  2IUV D;  2HXC D;  3RMZ C;  1MAF L;  3L4O C;  2H3X B;  2HJ4 D;  1MAE L;  2AGW D;  3RN0 C;  3C75 L;  3SWS C;  3SXT C;  2GC4 B;  2J57 K;  2AH0 D;  3RN1 C;  3PXT C;  2AGZ D;  3L4M C;  3ORV C;  2I0S D;  2J55 L;  1MG3 B;  2IUR D;  1MG2 B;  2HJB D;  2MAD L;  2OK6 D;  2OIZ D;  3PXS C;  4O1Q C;  3SJL C;  3SVW C;  2OK4 D;  4L1Q C;  2AGY D;  4FA1 C;  4FA9 C;  4K3I C;  2AH1 D;  4L3G C;  2GC7 B;  3SLE C;  2J56 L;  4FA5 C;  4FAV C;  2I0R D;  2IUP D;  2IAA B;  2OJY D;  4Y5R C; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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