2H3XB

Crystal structure of an electron transfer complex between aromatic amine dehydrogenase and azurin from alcaligenes faecalis (form 3)
Total Genus 31
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
31
Knots found
sequence length
125
structure length
124
Chain Sequence
ADHISLNPDLANEDEVNSCDYWRHCAVDGFLCSCCGGTTTTCPPGSTPSPISIGTCHNPHDGKDYLISYHDCCGKTACGRCQCNTQTRERPGYEFFLHNDVNWCMANENSTFHCTTSVLVGLAK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase/electron transport
publication title Crystal Structure of an Electron Transfer Complex between Aromatic Amine Dehydrogenase and Azurin from Alcaligenes faecalis.
pubmed doi rcsb
molecule keywords Aromatic Amine Dehydrogenase
total genus 31
structure length 124
sequence length 125
chains with identical sequence E
other databases KnotProt 2.0: K
ec nomenclature ec 1.4.9.2: Aralkylamine dehydrogenase (azurin).
pdb deposition date 2006-05-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF02975 Me-amine-dh_L Methylamine dehydrogenase, L chain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.30.10 Mainly Beta Sandwich Electron Transport Ethylamine Dehydrogenase Methylamine/Aralkylamine dehydrogenase light chain 2h3xB00
2AH1D 4FA1C 2AGYD 2GC7B 4L3GC 2HJ4D 4FAVC 2HKRD 2AGZD 4FANC 2IAAB 2OJYD 2AH0D 2HXCD 2AGWD 3C75L 4Y5RC 3RN1C 3SLEC 2IUQD 2HKMD 4L1QC 3SWSC 2MADL 1MG3B 2I0TD 3RMZC 3SVWC 4FA4C 4K3IC 2I0RD 3PXWC 2H47B 3L4OC 2J57K 1MDAL 2OIZD 4L3HC 4FA9C 2H3XB 2IUPD 1MG2B 2IUVD 4FB1C 3L4MC 2BBKL 2HJBD 2J55L 3SXTC 2Q7QD 2IURD 2MTAL 3RLMC 3ORVC 4O1QC 2OK6D 2J56L 3PXTC 3SJLC 2GC4B 3RN0C 2I0SD 2OK4D 2AGLD 3PXSC 2AGXD 4FA5C 1MAEL 1MAFL
chains in the Genus database with same CATH superfamily
2AH1D 4FA1C 2AGYD 2GC7B 4L3GC 2HJ4D 4FAVC 2HKRD 2AGZD 4FANC 2IAAB 2OJYD 2AH0D 2HXCD 2AGWD 3C75L 4Y5RC 3RN1C 3SLEC 2IUQD 2HKMD 4L1QC 3SWSC 2MADL 1MG3B 2I0TD 3RMZC 3SVWC 4FA4C 4K3IC 2I0RD 3PXWC 2H47B 3L4OC 2J57K 1MDAL 2OIZD 4L3HC 4FA9C 2H3XB 2IUPD 1MG2B 2IUVD 4FB1C 3L4MC 2BBKL 2HJBD 2J55L 3SXTC 2Q7QD 2IURD 2MTAL 3RLMC 3ORVC 4O1QC 2OK6D 2J56L 3PXTC 3SJLC 2GC4B 3RN0C 2I0SD 2OK4D 2AGLD 3PXSC 2AGXD 4FA5C 1MAEL 1MAFL
chains in the Genus database with same CATH topology
2AH1D 4FA1C 2AGYD 2GC7B 4L3GC 2HJ4D 4FAVC 2HKRD 2AGZD 4FANC 2IAAB 2OJYD 2AH0D 2HXCD 2AGWD 3C75L 4Y5RC 3RN1C 3SLEC 2IUQD 2HKMD 4L1QC 3SWSC 2MADL 1MG3B 2I0TD 3RMZC 3SVWC 4FA4C 4K3IC 2I0RD 3PXWC 2H47B 3L4OC 2J57K 1MDAL 2OIZD 4L3HC 4FA9C 2H3XB 2IUPD 1MG2B 2IUVD 4FB1C 3L4MC 2BBKL 2HJBD 2J55L 3SXTC 2Q7QD 2IURD 2MTAL 3RLMC 3ORVC 4O1QC 2OK6D 2J56L 3PXTC 3SJLC 2GC4B 3RN0C 2I0SD 2OK4D 2AGLD 3PXSC 2AGXD 4FA5C 1MAEL 1MAFL
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2AH1 D;  4FA1 C;  2AGY D;  2GC7 B;  4L3G C;  2HJ4 D;  4FAV C;  2HKR D;  2AGZ D;  4FAN C;  2IAA B;  2OJY D;  2AH0 D;  2HXC D;  2AGW D;  3C75 L;  4Y5R C;  3RN1 C;  3SLE C;  2IUQ D;  2HKM D;  4L1Q C;  3SWS C;  2MAD L;  1MG3 B;  2I0T D;  3RMZ C;  3SVW C;  4FA4 C;  4K3I C;  2I0R D;  3PXW C;  2H47 B;  3L4O C;  2J57 K;  1MDA L;  2OIZ D;  4L3H C;  4FA9 C;  2H3X B;  2IUP D;  1MG2 B;  2IUV D;  4FB1 C;  3L4M C;  2BBK L;  2HJB D;  2J55 L;  3SXT C;  2Q7Q D;  2IUR D;  2MTA L;  3RLM C;  3ORV C;  4O1Q C;  2OK6 D;  2J56 L;  3PXT C;  3SJL C;  2GC4 B;  3RN0 C;  2I0S D;  2OK4 D;  2AGL D;  3PXS C;  2AGX D;  4FA5 C;  1MAE L;  1MAF L; 
#chains in the Genus database with same CATH topology
 2AH1 D;  4FA1 C;  2AGY D;  2GC7 B;  4L3G C;  2HJ4 D;  4FAV C;  2HKR D;  2AGZ D;  4FAN C;  2IAA B;  2OJY D;  2AH0 D;  2HXC D;  2AGW D;  3C75 L;  4Y5R C;  3RN1 C;  3SLE C;  2IUQ D;  2HKM D;  4L1Q C;  3SWS C;  2MAD L;  1MG3 B;  2I0T D;  3RMZ C;  3SVW C;  4FA4 C;  4K3I C;  2I0R D;  3PXW C;  2H47 B;  3L4O C;  2J57 K;  1MDA L;  2OIZ D;  4L3H C;  4FA9 C;  2H3X B;  2IUP D;  1MG2 B;  2IUV D;  4FB1 C;  3L4M C;  2BBK L;  2HJB D;  2J55 L;  3SXT C;  2Q7Q D;  2IUR D;  2MTA L;  3RLM C;  3ORV C;  4O1Q C;  2OK6 D;  2J56 L;  3PXT C;  3SJL C;  2GC4 B;  3RN0 C;  2I0S D;  2OK4 D;  2AGL D;  3PXS C;  2AGX D;  4FA5 C;  1MAE L;  1MAF L; 
#chains in the Genus database with same CATH homology
 2AH1 D;  4FA1 C;  2AGY D;  2GC7 B;  4L3G C;  2HJ4 D;  4FAV C;  2HKR D;  2AGZ D;  4FAN C;  2IAA B;  2OJY D;  2AH0 D;  2HXC D;  2AGW D;  3C75 L;  4Y5R C;  3RN1 C;  3SLE C;  2IUQ D;  2HKM D;  4L1Q C;  3SWS C;  2MAD L;  1MG3 B;  2I0T D;  3RMZ C;  3SVW C;  4FA4 C;  4K3I C;  2I0R D;  3PXW C;  2H47 B;  3L4O C;  2J57 K;  1MDA L;  2OIZ D;  4L3H C;  4FA9 C;  2H3X B;  2IUP D;  1MG2 B;  2IUV D;  4FB1 C;  3L4M C;  2BBK L;  2HJB D;  2J55 L;  3SXT C;  2Q7Q D;  2IUR D;  2MTA L;  3RLM C;  3ORV C;  4O1Q C;  2OK6 D;  2J56 L;  3PXT C;  3SJL C;  2GC4 B;  3RN0 C;  2I0S D;  2OK4 D;  2AGL D;  3PXS C;  2AGX D;  4FA5 C;  1MAE L;  1MAF L; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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