2OK6D

Crystal structure of aromatic amine dehydrogenase ttq-formamide adduct oxidized with ferricyanide.
Total Genus 28
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
28
sequence length
110
structure length
109
Chain Sequence
EVNSCDYWRHCAVDGFLCSCCGGTTTTCPPGSTPSPISIGTCHNPHDGKDYLISYHDCCGKTACGRCQCNTQTRERPGYEFFLHNDVNWCMANENSTFHCTTSVLVGLA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase
publication title New insights into the reductive half-reaction mechanism of aromatic amine dehydrogenase revealed by reaction with carbinolamine substrates.
pubmed doi rcsb
molecule keywords Aromatic amine dehydrogenase, small subunit
total genus 28
structure length 109
sequence length 110
chains with identical sequence H
ec nomenclature ec 1.4.9.2: Aralkylamine dehydrogenase (azurin).
pdb deposition date 2007-01-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
D PF02975 Me-amine-dh_L Methylamine dehydrogenase, L chain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.30.10 Mainly Beta Sandwich Electron Transport Ethylamine Dehydrogenase Methylamine/Aralkylamine dehydrogenase light chain 2ok6D00
3RN1C 1MG2B 3SXTC 3L4OC 4FA4C 2Q7QD 2IUQD 3C75L 3SWSC 3RMZC 2AGWD 2AH0D 3PXSC 2AH1D 2I0TD 2AGXD 3L4MC 4FA5C 2HKMD 2AGYD 2IAAB 2IUPD 2OIZD 2BBKL 4K3IC 4L3GC 3RN0C 2H3XB 4FANC 2AGLD 4FB1C 2J56L 4Y5RC 3SVWC 4L1QC 4FAVC 2HJBD 3PXTC 3RLMC 2HKRD 2HJ4D 2J55L 3SLEC 2IUVD 2OK4D 2I0SD 2AGZD 2OK6D 1MDAL 1MG3B 2OJYD 3ORVC 2MTAL 3PXWC 4L3HC 4O1QC 2GC7B 2HXCD 2J57K 2IURD 2GC4B 2I0RD 4FA9C 2H47B 1MAEL 3SJLC 2MADL 1MAFL 4FA1C
chains in the Genus database with same CATH superfamily
3RN1C 1MG2B 3SXTC 3L4OC 4FA4C 2Q7QD 2IUQD 3C75L 3SWSC 3RMZC 2AGWD 2AH0D 3PXSC 2AH1D 2I0TD 2AGXD 3L4MC 4FA5C 2HKMD 2AGYD 2IAAB 2IUPD 2OIZD 2BBKL 4K3IC 4L3GC 3RN0C 2H3XB 4FANC 2AGLD 4FB1C 2J56L 4Y5RC 3SVWC 4L1QC 4FAVC 2HJBD 3PXTC 3RLMC 2HKRD 2HJ4D 2J55L 3SLEC 2IUVD 2OK4D 2I0SD 2AGZD 2OK6D 1MDAL 1MG3B 2OJYD 3ORVC 2MTAL 3PXWC 4L3HC 4O1QC 2GC7B 2HXCD 2J57K 2IURD 2GC4B 2I0RD 4FA9C 2H47B 1MAEL 3SJLC 2MADL 1MAFL 4FA1C
chains in the Genus database with same CATH topology
3RN1C 1MG2B 3SXTC 3L4OC 4FA4C 2Q7QD 2IUQD 3C75L 3SWSC 3RMZC 2AGWD 2AH0D 3PXSC 2AH1D 2I0TD 2AGXD 3L4MC 4FA5C 2HKMD 2AGYD 2IAAB 2IUPD 2OIZD 2BBKL 4K3IC 4L3GC 3RN0C 2H3XB 4FANC 2AGLD 4FB1C 2J56L 4Y5RC 3SVWC 4L1QC 4FAVC 2HJBD 3PXTC 3RLMC 2HKRD 2HJ4D 2J55L 3SLEC 2IUVD 2OK4D 2I0SD 2AGZD 2OK6D 1MDAL 1MG3B 2OJYD 3ORVC 2MTAL 3PXWC 4L3HC 4O1QC 2GC7B 2HXCD 2J57K 2IURD 2GC4B 2I0RD 4FA9C 2H47B 1MAEL 3SJLC 2MADL 1MAFL 4FA1C
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3RN1 C;  1MG2 B;  3SXT C;  3L4O C;  4FA4 C;  2Q7Q D;  2IUQ D;  3C75 L;  3SWS C;  3RMZ C;  2AGW D;  2AH0 D;  3PXS C;  2AH1 D;  2I0T D;  2AGX D;  3L4M C;  4FA5 C;  2HKM D;  2AGY D;  2IAA B;  2IUP D;  2OIZ D;  2BBK L;  4K3I C;  4L3G C;  3RN0 C;  2H3X B;  4FAN C;  2AGL D;  4FB1 C;  2J56 L;  4Y5R C;  3SVW C;  4L1Q C;  4FAV C;  2HJB D;  3PXT C;  3RLM C;  2HKR D;  2HJ4 D;  2J55 L;  3SLE C;  2IUV D;  2OK4 D;  2I0S D;  2AGZ D;  2OK6 D;  1MDA L;  1MG3 B;  2OJY D;  3ORV C;  2MTA L;  3PXW C;  4L3H C;  4O1Q C;  2GC7 B;  2HXC D;  2J57 K;  2IUR D;  2GC4 B;  2I0R D;  4FA9 C;  2H47 B;  1MAE L;  3SJL C;  2MAD L;  1MAF L;  4FA1 C; 
#chains in the Genus database with same CATH topology
 3RN1 C;  1MG2 B;  3SXT C;  3L4O C;  4FA4 C;  2Q7Q D;  2IUQ D;  3C75 L;  3SWS C;  3RMZ C;  2AGW D;  2AH0 D;  3PXS C;  2AH1 D;  2I0T D;  2AGX D;  3L4M C;  4FA5 C;  2HKM D;  2AGY D;  2IAA B;  2IUP D;  2OIZ D;  2BBK L;  4K3I C;  4L3G C;  3RN0 C;  2H3X B;  4FAN C;  2AGL D;  4FB1 C;  2J56 L;  4Y5R C;  3SVW C;  4L1Q C;  4FAV C;  2HJB D;  3PXT C;  3RLM C;  2HKR D;  2HJ4 D;  2J55 L;  3SLE C;  2IUV D;  2OK4 D;  2I0S D;  2AGZ D;  2OK6 D;  1MDA L;  1MG3 B;  2OJY D;  3ORV C;  2MTA L;  3PXW C;  4L3H C;  4O1Q C;  2GC7 B;  2HXC D;  2J57 K;  2IUR D;  2GC4 B;  2I0R D;  4FA9 C;  2H47 B;  1MAE L;  3SJL C;  2MAD L;  1MAF L;  4FA1 C; 
#chains in the Genus database with same CATH homology
 3RN1 C;  1MG2 B;  3SXT C;  3L4O C;  4FA4 C;  2Q7Q D;  2IUQ D;  3C75 L;  3SWS C;  3RMZ C;  2AGW D;  2AH0 D;  3PXS C;  2AH1 D;  2I0T D;  2AGX D;  3L4M C;  4FA5 C;  2HKM D;  2AGY D;  2IAA B;  2IUP D;  2OIZ D;  2BBK L;  4K3I C;  4L3G C;  3RN0 C;  2H3X B;  4FAN C;  2AGL D;  4FB1 C;  2J56 L;  4Y5R C;  3SVW C;  4L1Q C;  4FAV C;  2HJB D;  3PXT C;  3RLM C;  2HKR D;  2HJ4 D;  2J55 L;  3SLE C;  2IUV D;  2OK4 D;  2I0S D;  2AGZ D;  2OK6 D;  1MDA L;  1MG3 B;  2OJY D;  3ORV C;  2MTA L;  3PXW C;  4L3H C;  4O1Q C;  2GC7 B;  2HXC D;  2J57 K;  2IUR D;  2GC4 B;  2I0R D;  4FA9 C;  2H47 B;  1MAE L;  3SJL C;  2MAD L;  1MAF L;  4FA1 C; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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