2OK6D

Crystal structure of aromatic amine dehydrogenase ttq-formamide adduct oxidized with ferricyanide.
Total Genus 28
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
28
sequence length
110
structure length
109
Chain Sequence
EVNSCDYWRHCAVDGFLCSCCGGTTTTCPPGSTPSPISIGTCHNPHDGKDYLISYHDCCGKTACGRCQCNTQTRERPGYEFFLHNDVNWCMANENSTFHCTTSVLVGLA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Aromatic amine dehydrogenase, small subunit
publication title New insights into the reductive half-reaction mechanism of aromatic amine dehydrogenase revealed by reaction with carbinolamine substrates.
pubmed doi rcsb
molecule tags Oxidoreductase
total genus 28
structure length 109
sequence length 110
chains with identical sequence H
ec nomenclature ec 1.4.9.2: Aralkylamine dehydrogenase (azurin).
pdb deposition date 2007-01-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
D PF02975 Me-amine-dh_L Methylamine dehydrogenase, L chain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.30.10 Mainly Beta Sandwich Electron Transport Ethylamine Dehydrogenase Methylamine/Aralkylamine dehydrogenase light chain 2ok6D00
1MG3B 2GC7B 3SWSC 3RLMC 3SVWC 1MDAL 2GC4B 2AH1D 2H3XB 2Q7QD 4L3GC 2AGXD 4FA5C 2IUQD 2J57K 2H47B 2J56L 3RMZC 2IUVD 2OK6D 4Y5RC 4FA9C 4O1QC 1MG2B 2IAAB 4FB1C 3SXTC 2I0SD 2HKMD 3RN1C 2MTAL 1MAEL 1MAFL 2HKRD 2AGWD 2I0RD 3C75L 3PXSC 3SJLC 3ORVC 4FAVC 3L4OC 2AGZD 2AGYD 2AH0D 3SLEC 3L4MC 2IURD 4FA1C 2HJBD 2MADL 2AGLD 3PXWC 2BBKL 4L3HC 3RN0C 4FANC 2OK4D 2IUPD 2J55L 2OIZD 2HJ4D 2I0TD 2OJYD 4K3IC 2HXCD 4L1QC 4FA4C 3PXTC
chains in the Genus database with same CATH superfamily
1MG3B 2GC7B 3SWSC 3RLMC 3SVWC 1MDAL 2GC4B 2AH1D 2H3XB 2Q7QD 4L3GC 2AGXD 4FA5C 2IUQD 2J57K 2H47B 2J56L 3RMZC 2IUVD 2OK6D 4Y5RC 4FA9C 4O1QC 1MG2B 2IAAB 4FB1C 3SXTC 2I0SD 2HKMD 3RN1C 2MTAL 1MAEL 1MAFL 2HKRD 2AGWD 2I0RD 3C75L 3PXSC 3SJLC 3ORVC 4FAVC 3L4OC 2AGZD 2AGYD 2AH0D 3SLEC 3L4MC 2IURD 4FA1C 2HJBD 2MADL 2AGLD 3PXWC 2BBKL 4L3HC 3RN0C 4FANC 2OK4D 2IUPD 2J55L 2OIZD 2HJ4D 2I0TD 2OJYD 4K3IC 2HXCD 4L1QC 4FA4C 3PXTC
chains in the Genus database with same CATH topology
1MG3B 2GC7B 3SWSC 3RLMC 3SVWC 1MDAL 2GC4B 2AH1D 2H3XB 2Q7QD 4L3GC 2AGXD 4FA5C 2IUQD 2J57K 2H47B 2J56L 3RMZC 2IUVD 2OK6D 4Y5RC 4FA9C 4O1QC 1MG2B 2IAAB 4FB1C 3SXTC 2I0SD 2HKMD 3RN1C 2MTAL 1MAEL 1MAFL 2HKRD 2AGWD 2I0RD 3C75L 3PXSC 3SJLC 3ORVC 4FAVC 3L4OC 2AGZD 2AGYD 2AH0D 3SLEC 3L4MC 2IURD 4FA1C 2HJBD 2MADL 2AGLD 3PXWC 2BBKL 4L3HC 3RN0C 4FANC 2OK4D 2IUPD 2J55L 2OIZD 2HJ4D 2I0TD 2OJYD 4K3IC 2HXCD 4L1QC 4FA4C 3PXTC
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1MG3 B;  2GC7 B;  3SWS C;  3RLM C;  3SVW C;  1MDA L;  2GC4 B;  2AH1 D;  2H3X B;  2Q7Q D;  4L3G C;  2AGX D;  4FA5 C;  2IUQ D;  2J57 K;  2H47 B;  2J56 L;  3RMZ C;  2IUV D;  2OK6 D;  4Y5R C;  4FA9 C;  4O1Q C;  1MG2 B;  2IAA B;  4FB1 C;  3SXT C;  2I0S D;  2HKM D;  3RN1 C;  2MTA L;  1MAE L;  1MAF L;  2HKR D;  2AGW D;  2I0R D;  3C75 L;  3PXS C;  3SJL C;  3ORV C;  4FAV C;  3L4O C;  2AGZ D;  2AGY D;  2AH0 D;  3SLE C;  3L4M C;  2IUR D;  4FA1 C;  2HJB D;  2MAD L;  2AGL D;  3PXW C;  2BBK L;  4L3H C;  3RN0 C;  4FAN C;  2OK4 D;  2IUP D;  2J55 L;  2OIZ D;  2HJ4 D;  2I0T D;  2OJY D;  4K3I C;  2HXC D;  4L1Q C;  4FA4 C;  3PXT C; 
#chains in the Genus database with same CATH topology
 1MG3 B;  2GC7 B;  3SWS C;  3RLM C;  3SVW C;  1MDA L;  2GC4 B;  2AH1 D;  2H3X B;  2Q7Q D;  4L3G C;  2AGX D;  4FA5 C;  2IUQ D;  2J57 K;  2H47 B;  2J56 L;  3RMZ C;  2IUV D;  2OK6 D;  4Y5R C;  4FA9 C;  4O1Q C;  1MG2 B;  2IAA B;  4FB1 C;  3SXT C;  2I0S D;  2HKM D;  3RN1 C;  2MTA L;  1MAE L;  1MAF L;  2HKR D;  2AGW D;  2I0R D;  3C75 L;  3PXS C;  3SJL C;  3ORV C;  4FAV C;  3L4O C;  2AGZ D;  2AGY D;  2AH0 D;  3SLE C;  3L4M C;  2IUR D;  4FA1 C;  2HJB D;  2MAD L;  2AGL D;  3PXW C;  2BBK L;  4L3H C;  3RN0 C;  4FAN C;  2OK4 D;  2IUP D;  2J55 L;  2OIZ D;  2HJ4 D;  2I0T D;  2OJY D;  4K3I C;  2HXC D;  4L1Q C;  4FA4 C;  3PXT C; 
#chains in the Genus database with same CATH homology
 1MG3 B;  2GC7 B;  3SWS C;  3RLM C;  3SVW C;  1MDA L;  2GC4 B;  2AH1 D;  2H3X B;  2Q7Q D;  4L3G C;  2AGX D;  4FA5 C;  2IUQ D;  2J57 K;  2H47 B;  2J56 L;  3RMZ C;  2IUV D;  2OK6 D;  4Y5R C;  4FA9 C;  4O1Q C;  1MG2 B;  2IAA B;  4FB1 C;  3SXT C;  2I0S D;  2HKM D;  3RN1 C;  2MTA L;  1MAE L;  1MAF L;  2HKR D;  2AGW D;  2I0R D;  3C75 L;  3PXS C;  3SJL C;  3ORV C;  4FAV C;  3L4O C;  2AGZ D;  2AGY D;  2AH0 D;  3SLE C;  3L4M C;  2IUR D;  4FA1 C;  2HJB D;  2MAD L;  2AGL D;  3PXW C;  2BBK L;  4L3H C;  3RN0 C;  4FAN C;  2OK4 D;  2IUP D;  2J55 L;  2OIZ D;  2HJ4 D;  2I0T D;  2OJY D;  4K3I C;  2HXC D;  4L1Q C;  4FA4 C;  3PXT C; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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