1MAFL

The active site structure of methylamine dehydrogenase: hydrazines identify c6 as the reactive site of the tryptophan derived quinone cofactor
Total Genus 29
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
29
sequence length
124
structure length
123
Chain Sequence
VDPRAKWQPQDNDIQACDYWRHCSIDGNICDCSGGSLTNCPPGTKLATASVASCYNPTDGQSYLIAYRDCCGYNVSGRCPCLNTEGELPVYRPEFANDIIWCFGAEDDAMTYHCTISPIVGKA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase(chnh2(d)-deaminating)
molecule keywords METHYLAMINE DEHYDROGENASE (LIGHT SUBUNIT)
publication title Active site structure of methylamine dehydrogenase: hydrazines identify C6 as the reactive site of the tryptophan-derived quinone cofactor.
pubmed doi rcsb
source organism Paracoccus versutus
total genus 29
structure length 123
sequence length 124
ec nomenclature ec 1.4.9.1: Methylamine dehydrogenase (amicyanin).
pdb deposition date 1992-05-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
L PF02975 Me-amine-dh_L Methylamine dehydrogenase, L chain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.30.10 Mainly Beta Sandwich Electron Transport Ethylamine Dehydrogenase Methylamine/Aralkylamine dehydrogenase light chain 1mafL00
2AGXD 2HJBD 3PXSC 2AGLD 2AGWD 2HKRD 2Q7QD 4K3IC 4FB1C 2AGZD 2HJ4D 2I0TD 3RMZC 2OK4D 3RN0C 2J55L 3SJLC 4L3GC 2AH1D 2H47B 3L4OC 3RLMC 3RN1C 3SVWC 3ORVC 2MADL 2GC4B 2OK6D 3PXTC 2IAAB 2HKMD 4L1QC 2OIZD 2OJYD 4Y5RC 2I0RD 2BBKL 1MDAL 4FA4C 2HXCD 2IURD 2IUQD 3SXTC 4FANC 4FAVC 2AGYD 2J57K 2GC7B 2IUPD 2IUVD 4FA9C 1MG2B 1MG3B 2AH0D 2H3XB 2J56L 3C75L 4FA5C 3SWSC 1MAFL 3L4MC 3SLEC 2MTAL 2I0SD 4L3HC 1MAEL 4FA1C 4O1QC 3PXWC
chains in the Genus database with same CATH superfamily
2AGXD 2HJBD 3PXSC 2AGLD 2AGWD 2HKRD 2Q7QD 4K3IC 4FB1C 2AGZD 2HJ4D 2I0TD 3RMZC 2OK4D 3RN0C 2J55L 3SJLC 4L3GC 2AH1D 2H47B 3L4OC 3RLMC 3RN1C 3SVWC 3ORVC 2MADL 2GC4B 2OK6D 3PXTC 2IAAB 2HKMD 4L1QC 2OIZD 2OJYD 4Y5RC 2I0RD 2BBKL 1MDAL 4FA4C 2HXCD 2IURD 2IUQD 3SXTC 4FANC 4FAVC 2AGYD 2J57K 2GC7B 2IUPD 2IUVD 4FA9C 1MG2B 1MG3B 2AH0D 2H3XB 2J56L 3C75L 4FA5C 3SWSC 1MAFL 3L4MC 3SLEC 2MTAL 2I0SD 4L3HC 1MAEL 4FA1C 4O1QC 3PXWC
chains in the Genus database with same CATH topology
2AGXD 2HJBD 3PXSC 2AGLD 2AGWD 2HKRD 2Q7QD 4K3IC 4FB1C 2AGZD 2HJ4D 2I0TD 3RMZC 2OK4D 3RN0C 2J55L 3SJLC 4L3GC 2AH1D 2H47B 3L4OC 3RLMC 3RN1C 3SVWC 3ORVC 2MADL 2GC4B 2OK6D 3PXTC 2IAAB 2HKMD 4L1QC 2OIZD 2OJYD 4Y5RC 2I0RD 2BBKL 1MDAL 4FA4C 2HXCD 2IURD 2IUQD 3SXTC 4FANC 4FAVC 2AGYD 2J57K 2GC7B 2IUPD 2IUVD 4FA9C 1MG2B 1MG3B 2AH0D 2H3XB 2J56L 3C75L 4FA5C 3SWSC 1MAFL 3L4MC 3SLEC 2MTAL 2I0SD 4L3HC 1MAEL 4FA1C 4O1QC 3PXWC
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2AGX D;  2HJB D;  3PXS C;  2AGL D;  2AGW D;  2HKR D;  2Q7Q D;  4K3I C;  4FB1 C;  2AGZ D;  2HJ4 D;  2I0T D;  3RMZ C;  2OK4 D;  3RN0 C;  2J55 L;  3SJL C;  4L3G C;  2AH1 D;  2H47 B;  3L4O C;  3RLM C;  3RN1 C;  3SVW C;  3ORV C;  2MAD L;  2GC4 B;  2OK6 D;  3PXT C;  2IAA B;  2HKM D;  4L1Q C;  2OIZ D;  2OJY D;  4Y5R C;  2I0R D;  2BBK L;  1MDA L;  4FA4 C;  2HXC D;  2IUR D;  2IUQ D;  3SXT C;  4FAN C;  4FAV C;  2AGY D;  2J57 K;  2GC7 B;  2IUP D;  2IUV D;  4FA9 C;  1MG2 B;  1MG3 B;  2AH0 D;  2H3X B;  2J56 L;  3C75 L;  4FA5 C;  3SWS C;  1MAF L;  3L4M C;  3SLE C;  2MTA L;  2I0S D;  4L3H C;  1MAE L;  4FA1 C;  4O1Q C;  3PXW C; 
#chains in the Genus database with same CATH topology
 2AGX D;  2HJB D;  3PXS C;  2AGL D;  2AGW D;  2HKR D;  2Q7Q D;  4K3I C;  4FB1 C;  2AGZ D;  2HJ4 D;  2I0T D;  3RMZ C;  2OK4 D;  3RN0 C;  2J55 L;  3SJL C;  4L3G C;  2AH1 D;  2H47 B;  3L4O C;  3RLM C;  3RN1 C;  3SVW C;  3ORV C;  2MAD L;  2GC4 B;  2OK6 D;  3PXT C;  2IAA B;  2HKM D;  4L1Q C;  2OIZ D;  2OJY D;  4Y5R C;  2I0R D;  2BBK L;  1MDA L;  4FA4 C;  2HXC D;  2IUR D;  2IUQ D;  3SXT C;  4FAN C;  4FAV C;  2AGY D;  2J57 K;  2GC7 B;  2IUP D;  2IUV D;  4FA9 C;  1MG2 B;  1MG3 B;  2AH0 D;  2H3X B;  2J56 L;  3C75 L;  4FA5 C;  3SWS C;  1MAF L;  3L4M C;  3SLE C;  2MTA L;  2I0S D;  4L3H C;  1MAE L;  4FA1 C;  4O1Q C;  3PXW C; 
#chains in the Genus database with same CATH homology
 2AGX D;  2HJB D;  3PXS C;  2AGL D;  2AGW D;  2HKR D;  2Q7Q D;  4K3I C;  4FB1 C;  2AGZ D;  2HJ4 D;  2I0T D;  3RMZ C;  2OK4 D;  3RN0 C;  2J55 L;  3SJL C;  4L3G C;  2AH1 D;  2H47 B;  3L4O C;  3RLM C;  3RN1 C;  3SVW C;  3ORV C;  2MAD L;  2GC4 B;  2OK6 D;  3PXT C;  2IAA B;  2HKM D;  4L1Q C;  2OIZ D;  2OJY D;  4Y5R C;  2I0R D;  2BBK L;  1MDA L;  4FA4 C;  2HXC D;  2IUR D;  2IUQ D;  3SXT C;  4FAN C;  4FAV C;  2AGY D;  2J57 K;  2GC7 B;  2IUP D;  2IUV D;  4FA9 C;  1MG2 B;  1MG3 B;  2AH0 D;  2H3X B;  2J56 L;  3C75 L;  4FA5 C;  3SWS C;  1MAF L;  3L4M C;  3SLE C;  2MTA L;  2I0S D;  4L3H C;  1MAE L;  4FA1 C;  4O1Q C;  3PXW C; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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