2HKRD

Structures of the carbinolamine and schiff-base intermediates in the reductive half-reaction of aromatic amine dehydrogenase (aadh) with p-methoxyphenylethylamine
Total Genus 27
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
27
Knots found
sequence length
110
structure length
109
Chain Sequence
EVNSCDYWRHCAVDGFLCSCCGGTTTTCPPGSTPSPISIGTCHNPHDGKDYLISYHDCCGKTACGRCQCNTQTRERPGYEFFLHNDVNWCMANENSTFHCTTSVLVGLA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structure-reactivity correlations and kinetic isotope effects in aromatic amine dehydrogenase
rcsb
molecule tags Oxidoreductase
source organism Alcaligenes faecalis
molecule keywords Aromatic amine dehydrogenase, small subunit
total genus 27
structure length 109
sequence length 110
chains with identical sequence H
other databases KnotProt 2.0: K
ec nomenclature ec 1.4.9.2: Aralkylamine dehydrogenase (azurin).
pdb deposition date 2006-07-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
D PF02975 Me-amine-dh_L Methylamine dehydrogenase, L chain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.30.10 Mainly Beta Sandwich Electron Transport Ethylamine Dehydrogenase Methylamine/Aralkylamine dehydrogenase light chain 2hkrD00
2J55L 2I0RD 3L4MC 1MAFL 2AGXD 4FA1C 3PXTC 3SVWC 3RN1C 2MADL 2GC7B 2AGYD 2HJ4D 2Q7QD 2IURD 2J56L 3SXTC 2AH1D 2GC4B 2OK4D 4FAVC 2OK6D 2H3XB 2HKRD 2OJYD 4L1QC 3C75L 2H47B 2AGLD 3SLEC 2IUQD 3RN0C 3SJLC 4FANC 2HKMD 3PXWC 2AH0D 4FA5C 4O1QC 2IUPD 1MG2B 2OIZD 2BBKL 4L3HC 1MDAL 2AGWD 3RMZC 2IAAB 2J57K 3L4OC 3RLMC 4FA9C 4FA4C 2IUVD 2MTAL 2HJBD 4K3IC 2HXCD 3SWSC 3ORVC 4Y5RC 2I0TD 2AGZD 3PXSC 1MG3B 4L3GC 2I0SD 1MAEL 4FB1C
chains in the Genus database with same CATH superfamily
2J55L 2I0RD 3L4MC 1MAFL 2AGXD 4FA1C 3PXTC 3SVWC 3RN1C 2MADL 2GC7B 2AGYD 2HJ4D 2Q7QD 2IURD 2J56L 3SXTC 2AH1D 2GC4B 2OK4D 4FAVC 2OK6D 2H3XB 2HKRD 2OJYD 4L1QC 3C75L 2H47B 2AGLD 3SLEC 2IUQD 3RN0C 3SJLC 4FANC 2HKMD 3PXWC 2AH0D 4FA5C 4O1QC 2IUPD 1MG2B 2OIZD 2BBKL 4L3HC 1MDAL 2AGWD 3RMZC 2IAAB 2J57K 3L4OC 3RLMC 4FA9C 4FA4C 2IUVD 2MTAL 2HJBD 4K3IC 2HXCD 3SWSC 3ORVC 4Y5RC 2I0TD 2AGZD 3PXSC 1MG3B 4L3GC 2I0SD 1MAEL 4FB1C
chains in the Genus database with same CATH topology
2J55L 2I0RD 3L4MC 1MAFL 2AGXD 4FA1C 3PXTC 3SVWC 3RN1C 2MADL 2GC7B 2AGYD 2HJ4D 2Q7QD 2IURD 2J56L 3SXTC 2AH1D 2GC4B 2OK4D 4FAVC 2OK6D 2H3XB 2HKRD 2OJYD 4L1QC 3C75L 2H47B 2AGLD 3SLEC 2IUQD 3RN0C 3SJLC 4FANC 2HKMD 3PXWC 2AH0D 4FA5C 4O1QC 2IUPD 1MG2B 2OIZD 2BBKL 4L3HC 1MDAL 2AGWD 3RMZC 2IAAB 2J57K 3L4OC 3RLMC 4FA9C 4FA4C 2IUVD 2MTAL 2HJBD 4K3IC 2HXCD 3SWSC 3ORVC 4Y5RC 2I0TD 2AGZD 3PXSC 1MG3B 4L3GC 2I0SD 1MAEL 4FB1C
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2J55 L;  2I0R D;  3L4M C;  1MAF L;  2AGX D;  4FA1 C;  3PXT C;  3SVW C;  3RN1 C;  2MAD L;  2GC7 B;  2AGY D;  2HJ4 D;  2Q7Q D;  2IUR D;  2J56 L;  3SXT C;  2AH1 D;  2GC4 B;  2OK4 D;  4FAV C;  2OK6 D;  2H3X B;  2HKR D;  2OJY D;  4L1Q C;  3C75 L;  2H47 B;  2AGL D;  3SLE C;  2IUQ D;  3RN0 C;  3SJL C;  4FAN C;  2HKM D;  3PXW C;  2AH0 D;  4FA5 C;  4O1Q C;  2IUP D;  1MG2 B;  2OIZ D;  2BBK L;  4L3H C;  1MDA L;  2AGW D;  3RMZ C;  2IAA B;  2J57 K;  3L4O C;  3RLM C;  4FA9 C;  4FA4 C;  2IUV D;  2MTA L;  2HJB D;  4K3I C;  2HXC D;  3SWS C;  3ORV C;  4Y5R C;  2I0T D;  2AGZ D;  3PXS C;  1MG3 B;  4L3G C;  2I0S D;  1MAE L;  4FB1 C; 
#chains in the Genus database with same CATH topology
 2J55 L;  2I0R D;  3L4M C;  1MAF L;  2AGX D;  4FA1 C;  3PXT C;  3SVW C;  3RN1 C;  2MAD L;  2GC7 B;  2AGY D;  2HJ4 D;  2Q7Q D;  2IUR D;  2J56 L;  3SXT C;  2AH1 D;  2GC4 B;  2OK4 D;  4FAV C;  2OK6 D;  2H3X B;  2HKR D;  2OJY D;  4L1Q C;  3C75 L;  2H47 B;  2AGL D;  3SLE C;  2IUQ D;  3RN0 C;  3SJL C;  4FAN C;  2HKM D;  3PXW C;  2AH0 D;  4FA5 C;  4O1Q C;  2IUP D;  1MG2 B;  2OIZ D;  2BBK L;  4L3H C;  1MDA L;  2AGW D;  3RMZ C;  2IAA B;  2J57 K;  3L4O C;  3RLM C;  4FA9 C;  4FA4 C;  2IUV D;  2MTA L;  2HJB D;  4K3I C;  2HXC D;  3SWS C;  3ORV C;  4Y5R C;  2I0T D;  2AGZ D;  3PXS C;  1MG3 B;  4L3G C;  2I0S D;  1MAE L;  4FB1 C; 
#chains in the Genus database with same CATH homology
 2J55 L;  2I0R D;  3L4M C;  1MAF L;  2AGX D;  4FA1 C;  3PXT C;  3SVW C;  3RN1 C;  2MAD L;  2GC7 B;  2AGY D;  2HJ4 D;  2Q7Q D;  2IUR D;  2J56 L;  3SXT C;  2AH1 D;  2GC4 B;  2OK4 D;  4FAV C;  2OK6 D;  2H3X B;  2HKR D;  2OJY D;  4L1Q C;  3C75 L;  2H47 B;  2AGL D;  3SLE C;  2IUQ D;  3RN0 C;  3SJL C;  4FAN C;  2HKM D;  3PXW C;  2AH0 D;  4FA5 C;  4O1Q C;  2IUP D;  1MG2 B;  2OIZ D;  2BBK L;  4L3H C;  1MDA L;  2AGW D;  3RMZ C;  2IAA B;  2J57 K;  3L4O C;  3RLM C;  4FA9 C;  4FA4 C;  2IUV D;  2MTA L;  2HJB D;  4K3I C;  2HXC D;  3SWS C;  3ORV C;  4Y5R C;  2I0T D;  2AGZ D;  3PXS C;  1MG3 B;  4L3G C;  2I0S D;  1MAE L;  4FB1 C; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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