2HKRD

Structures of the carbinolamine and schiff-base intermediates in the reductive half-reaction of aromatic amine dehydrogenase (aadh) with p-methoxyphenylethylamine
Total Genus 27
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
27
Knots found
sequence length
110
structure length
109
Chain Sequence
EVNSCDYWRHCAVDGFLCSCCGGTTTTCPPGSTPSPISIGTCHNPHDGKDYLISYHDCCGKTACGRCQCNTQTRERPGYEFFLHNDVNWCMANENSTFHCTTSVLVGLA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase
molecule keywords Aromatic amine dehydrogenase, small subunit
publication title Structure-reactivity correlations and kinetic isotope effects in aromatic amine dehydrogenase
rcsb
source organism Alcaligenes faecalis
total genus 27
structure length 109
sequence length 110
chains with identical sequence H
other databases KnotProt 2.0: K
ec nomenclature ec 1.4.9.2: Aralkylamine dehydrogenase (azurin).
pdb deposition date 2006-07-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
D PF02975 Me-amine-dh_L Methylamine dehydrogenase, L chain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.30.10 Mainly Beta Sandwich Electron Transport Ethylamine Dehydrogenase Methylamine/Aralkylamine dehydrogenase light chain 2hkrD00
3L4OC 4FB1C 2IUPD 2AGWD 3SVWC 2AGZD 1MG2B 3SLEC 3RN0C 4FAVC 2BBKL 2I0RD 2IAAB 2AGYD 2J56L 3ORVC 2J57K 2HXCD 2MTAL 4O1QC 3SWSC 1MAEL 2IUQD 2I0TD 4K3IC 2OK6D 2IURD 4FA1C 3RMZC 4FA9C 3PXWC 4L1QC 2IUVD 2GC4B 3RLMC 2MADL 3C75L 1MG3B 2OK4D 2HJ4D 2HKMD 3SXTC 1MDAL 2Q7QD 2GC7B 2AH0D 3RN1C 2OIZD 3PXSC 4FA4C 2H47B 3L4MC 4Y5RC 3SJLC 2H3XB 4FANC 1MAFL 2J55L 3PXTC 4L3HC 2I0SD 4FA5C 2HKRD 2OJYD 4L3GC 2HJBD 2AH1D 2AGLD 2AGXD
chains in the Genus database with same CATH superfamily
3L4OC 4FB1C 2IUPD 2AGWD 3SVWC 2AGZD 1MG2B 3SLEC 3RN0C 4FAVC 2BBKL 2I0RD 2IAAB 2AGYD 2J56L 3ORVC 2J57K 2HXCD 2MTAL 4O1QC 3SWSC 1MAEL 2IUQD 2I0TD 4K3IC 2OK6D 2IURD 4FA1C 3RMZC 4FA9C 3PXWC 4L1QC 2IUVD 2GC4B 3RLMC 2MADL 3C75L 1MG3B 2OK4D 2HJ4D 2HKMD 3SXTC 1MDAL 2Q7QD 2GC7B 2AH0D 3RN1C 2OIZD 3PXSC 4FA4C 2H47B 3L4MC 4Y5RC 3SJLC 2H3XB 4FANC 1MAFL 2J55L 3PXTC 4L3HC 2I0SD 4FA5C 2HKRD 2OJYD 4L3GC 2HJBD 2AH1D 2AGLD 2AGXD
chains in the Genus database with same CATH topology
3L4OC 4FB1C 2IUPD 2AGWD 3SVWC 2AGZD 1MG2B 3SLEC 3RN0C 4FAVC 2BBKL 2I0RD 2IAAB 2AGYD 2J56L 3ORVC 2J57K 2HXCD 2MTAL 4O1QC 3SWSC 1MAEL 2IUQD 2I0TD 4K3IC 2OK6D 2IURD 4FA1C 3RMZC 4FA9C 3PXWC 4L1QC 2IUVD 2GC4B 3RLMC 2MADL 3C75L 1MG3B 2OK4D 2HJ4D 2HKMD 3SXTC 1MDAL 2Q7QD 2GC7B 2AH0D 3RN1C 2OIZD 3PXSC 4FA4C 2H47B 3L4MC 4Y5RC 3SJLC 2H3XB 4FANC 1MAFL 2J55L 3PXTC 4L3HC 2I0SD 4FA5C 2HKRD 2OJYD 4L3GC 2HJBD 2AH1D 2AGLD 2AGXD
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3L4O C;  4FB1 C;  2IUP D;  2AGW D;  3SVW C;  2AGZ D;  1MG2 B;  3SLE C;  3RN0 C;  4FAV C;  2BBK L;  2I0R D;  2IAA B;  2AGY D;  2J56 L;  3ORV C;  2J57 K;  2HXC D;  2MTA L;  4O1Q C;  3SWS C;  1MAE L;  2IUQ D;  2I0T D;  4K3I C;  2OK6 D;  2IUR D;  4FA1 C;  3RMZ C;  4FA9 C;  3PXW C;  4L1Q C;  2IUV D;  2GC4 B;  3RLM C;  2MAD L;  3C75 L;  1MG3 B;  2OK4 D;  2HJ4 D;  2HKM D;  3SXT C;  1MDA L;  2Q7Q D;  2GC7 B;  2AH0 D;  3RN1 C;  2OIZ D;  3PXS C;  4FA4 C;  2H47 B;  3L4M C;  4Y5R C;  3SJL C;  2H3X B;  4FAN C;  1MAF L;  2J55 L;  3PXT C;  4L3H C;  2I0S D;  4FA5 C;  2HKR D;  2OJY D;  4L3G C;  2HJB D;  2AH1 D;  2AGL D;  2AGX D; 
#chains in the Genus database with same CATH topology
 3L4O C;  4FB1 C;  2IUP D;  2AGW D;  3SVW C;  2AGZ D;  1MG2 B;  3SLE C;  3RN0 C;  4FAV C;  2BBK L;  2I0R D;  2IAA B;  2AGY D;  2J56 L;  3ORV C;  2J57 K;  2HXC D;  2MTA L;  4O1Q C;  3SWS C;  1MAE L;  2IUQ D;  2I0T D;  4K3I C;  2OK6 D;  2IUR D;  4FA1 C;  3RMZ C;  4FA9 C;  3PXW C;  4L1Q C;  2IUV D;  2GC4 B;  3RLM C;  2MAD L;  3C75 L;  1MG3 B;  2OK4 D;  2HJ4 D;  2HKM D;  3SXT C;  1MDA L;  2Q7Q D;  2GC7 B;  2AH0 D;  3RN1 C;  2OIZ D;  3PXS C;  4FA4 C;  2H47 B;  3L4M C;  4Y5R C;  3SJL C;  2H3X B;  4FAN C;  1MAF L;  2J55 L;  3PXT C;  4L3H C;  2I0S D;  4FA5 C;  2HKR D;  2OJY D;  4L3G C;  2HJB D;  2AH1 D;  2AGL D;  2AGX D; 
#chains in the Genus database with same CATH homology
 3L4O C;  4FB1 C;  2IUP D;  2AGW D;  3SVW C;  2AGZ D;  1MG2 B;  3SLE C;  3RN0 C;  4FAV C;  2BBK L;  2I0R D;  2IAA B;  2AGY D;  2J56 L;  3ORV C;  2J57 K;  2HXC D;  2MTA L;  4O1Q C;  3SWS C;  1MAE L;  2IUQ D;  2I0T D;  4K3I C;  2OK6 D;  2IUR D;  4FA1 C;  3RMZ C;  4FA9 C;  3PXW C;  4L1Q C;  2IUV D;  2GC4 B;  3RLM C;  2MAD L;  3C75 L;  1MG3 B;  2OK4 D;  2HJ4 D;  2HKM D;  3SXT C;  1MDA L;  2Q7Q D;  2GC7 B;  2AH0 D;  3RN1 C;  2OIZ D;  3PXS C;  4FA4 C;  2H47 B;  3L4M C;  4Y5R C;  3SJL C;  2H3X B;  4FAN C;  1MAF L;  2J55 L;  3PXT C;  4L3H C;  2I0S D;  4FA5 C;  2HKR D;  2OJY D;  4L3G C;  2HJB D;  2AH1 D;  2AGL D;  2AGX D; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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