2HXCD

Crystal structure of the benzylamine complex of aromatic amine dehydrogenase in n-semiquinone form
Total Genus 29
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
29
Knots found
sequence length
110
structure length
109
Chain Sequence
EVNSCDYWRHCAVDGFLCSCCGGTTTTCPPGSTPSPISIGTCHNPHDGKDYLISYHDCCGKTACGRCQCNTQTRERPGYEFFLHNDVNWCMANENSTFHCTTSVLVGLA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase
publication title Atomic level insight into the oxidative half-reaction of aromatic amine dehydrogenase.
pubmed doi rcsb
molecule keywords Aromatic amine dehydrogenase
total genus 29
structure length 109
sequence length 110
chains with identical sequence H
other databases KnotProt 2.0: K
ec nomenclature ec 1.4.9.2: Aralkylamine dehydrogenase (azurin).
pdb deposition date 2006-08-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
D PF02975 Me-amine-dh_L Methylamine dehydrogenase, L chain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.30.10 Mainly Beta Sandwich Electron Transport Ethylamine Dehydrogenase Methylamine/Aralkylamine dehydrogenase light chain 2hxcD00
3RN1C 2MADL 4FAVC 2AGYD 2HJ4D 3RLMC 2J56L 1MG2B 3PXTC 4K3IC 3RN0C 3SLEC 2OIZD 2MTAL 2OJYD 2AGLD 2BBKL 3L4OC 4FA4C 4L3GC 2IAAB 3SVWC 2IUVD 2IURD 2Q7QD 2I0SD 4FA1C 3ORVC 3SJLC 3SWSC 1MAEL 2I0RD 2I0TD 2HKMD 4FA9C 2AH0D 2AH1D 2H3XB 4L1QC 4Y5RC 2AGZD 2IUQD 2GC4B 4O1QC 2HJBD 2HXCD 2IUPD 2OK4D 2AGWD 3SXTC 4FA5C 3C75L 1MAFL 2OK6D 2HKRD 3PXWC 3L4MC 2J57K 1MDAL 2H47B 1MG3B 3PXSC 3RMZC 2J55L 4FB1C 4L3HC 2AGXD 2GC7B 4FANC
chains in the Genus database with same CATH superfamily
3RN1C 2MADL 4FAVC 2AGYD 2HJ4D 3RLMC 2J56L 1MG2B 3PXTC 4K3IC 3RN0C 3SLEC 2OIZD 2MTAL 2OJYD 2AGLD 2BBKL 3L4OC 4FA4C 4L3GC 2IAAB 3SVWC 2IUVD 2IURD 2Q7QD 2I0SD 4FA1C 3ORVC 3SJLC 3SWSC 1MAEL 2I0RD 2I0TD 2HKMD 4FA9C 2AH0D 2AH1D 2H3XB 4L1QC 4Y5RC 2AGZD 2IUQD 2GC4B 4O1QC 2HJBD 2HXCD 2IUPD 2OK4D 2AGWD 3SXTC 4FA5C 3C75L 1MAFL 2OK6D 2HKRD 3PXWC 3L4MC 2J57K 1MDAL 2H47B 1MG3B 3PXSC 3RMZC 2J55L 4FB1C 4L3HC 2AGXD 2GC7B 4FANC
chains in the Genus database with same CATH topology
3RN1C 2MADL 4FAVC 2AGYD 2HJ4D 3RLMC 2J56L 1MG2B 3PXTC 4K3IC 3RN0C 3SLEC 2OIZD 2MTAL 2OJYD 2AGLD 2BBKL 3L4OC 4FA4C 4L3GC 2IAAB 3SVWC 2IUVD 2IURD 2Q7QD 2I0SD 4FA1C 3ORVC 3SJLC 3SWSC 1MAEL 2I0RD 2I0TD 2HKMD 4FA9C 2AH0D 2AH1D 2H3XB 4L1QC 4Y5RC 2AGZD 2IUQD 2GC4B 4O1QC 2HJBD 2HXCD 2IUPD 2OK4D 2AGWD 3SXTC 4FA5C 3C75L 1MAFL 2OK6D 2HKRD 3PXWC 3L4MC 2J57K 1MDAL 2H47B 1MG3B 3PXSC 3RMZC 2J55L 4FB1C 4L3HC 2AGXD 2GC7B 4FANC
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3RN1 C;  2MAD L;  4FAV C;  2AGY D;  2HJ4 D;  3RLM C;  2J56 L;  1MG2 B;  3PXT C;  4K3I C;  3RN0 C;  3SLE C;  2OIZ D;  2MTA L;  2OJY D;  2AGL D;  2BBK L;  3L4O C;  4FA4 C;  4L3G C;  2IAA B;  3SVW C;  2IUV D;  2IUR D;  2Q7Q D;  2I0S D;  4FA1 C;  3ORV C;  3SJL C;  3SWS C;  1MAE L;  2I0R D;  2I0T D;  2HKM D;  4FA9 C;  2AH0 D;  2AH1 D;  2H3X B;  4L1Q C;  4Y5R C;  2AGZ D;  2IUQ D;  2GC4 B;  4O1Q C;  2HJB D;  2HXC D;  2IUP D;  2OK4 D;  2AGW D;  3SXT C;  4FA5 C;  3C75 L;  1MAF L;  2OK6 D;  2HKR D;  3PXW C;  3L4M C;  2J57 K;  1MDA L;  2H47 B;  1MG3 B;  3PXS C;  3RMZ C;  2J55 L;  4FB1 C;  4L3H C;  2AGX D;  2GC7 B;  4FAN C; 
#chains in the Genus database with same CATH topology
 3RN1 C;  2MAD L;  4FAV C;  2AGY D;  2HJ4 D;  3RLM C;  2J56 L;  1MG2 B;  3PXT C;  4K3I C;  3RN0 C;  3SLE C;  2OIZ D;  2MTA L;  2OJY D;  2AGL D;  2BBK L;  3L4O C;  4FA4 C;  4L3G C;  2IAA B;  3SVW C;  2IUV D;  2IUR D;  2Q7Q D;  2I0S D;  4FA1 C;  3ORV C;  3SJL C;  3SWS C;  1MAE L;  2I0R D;  2I0T D;  2HKM D;  4FA9 C;  2AH0 D;  2AH1 D;  2H3X B;  4L1Q C;  4Y5R C;  2AGZ D;  2IUQ D;  2GC4 B;  4O1Q C;  2HJB D;  2HXC D;  2IUP D;  2OK4 D;  2AGW D;  3SXT C;  4FA5 C;  3C75 L;  1MAF L;  2OK6 D;  2HKR D;  3PXW C;  3L4M C;  2J57 K;  1MDA L;  2H47 B;  1MG3 B;  3PXS C;  3RMZ C;  2J55 L;  4FB1 C;  4L3H C;  2AGX D;  2GC7 B;  4FAN C; 
#chains in the Genus database with same CATH homology
 3RN1 C;  2MAD L;  4FAV C;  2AGY D;  2HJ4 D;  3RLM C;  2J56 L;  1MG2 B;  3PXT C;  4K3I C;  3RN0 C;  3SLE C;  2OIZ D;  2MTA L;  2OJY D;  2AGL D;  2BBK L;  3L4O C;  4FA4 C;  4L3G C;  2IAA B;  3SVW C;  2IUV D;  2IUR D;  2Q7Q D;  2I0S D;  4FA1 C;  3ORV C;  3SJL C;  3SWS C;  1MAE L;  2I0R D;  2I0T D;  2HKM D;  4FA9 C;  2AH0 D;  2AH1 D;  2H3X B;  4L1Q C;  4Y5R C;  2AGZ D;  2IUQ D;  2GC4 B;  4O1Q C;  2HJB D;  2HXC D;  2IUP D;  2OK4 D;  2AGW D;  3SXT C;  4FA5 C;  3C75 L;  1MAF L;  2OK6 D;  2HKR D;  3PXW C;  3L4M C;  2J57 K;  1MDA L;  2H47 B;  1MG3 B;  3PXS C;  3RMZ C;  2J55 L;  4FB1 C;  4L3H C;  2AGX D;  2GC7 B;  4FAN C; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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