2Q7QD

Crystal structure of alcaligenes faecalis aadh in complex with p-chlorobenzylamine.
Total Genus 24
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
24
Knots found
sequence length
109
structure length
108
Chain Sequence
EVNSCDYWRHCAVDGFLCSCCGGTTTTCPPGSTPSPISIGTCHNPHDGKDYLISYHDCCGKTACGRCQCNTQTRERPGYEFFLHNDVNWCMANENSTFHCTTSVLVGL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase
source organism Alcaligenes faecalis
publication title Isotope effects reveal that para-substituted benzylamines are poor reactivity probes of the quinoprotein mechanism for aromatic amine dehydrogenase.
pubmed doi rcsb
molecule keywords Aralkylamine dehydrogenase light chain
total genus 24
structure length 108
sequence length 109
chains with identical sequence H
other databases KnotProt 2.0: K
ec nomenclature ec 1.4.9.2: Aralkylamine dehydrogenase (azurin).
pdb deposition date 2007-06-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
D PF02975 Me-amine-dh_L Methylamine dehydrogenase, L chain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.30.10 Mainly Beta Sandwich Electron Transport Ethylamine Dehydrogenase Methylamine/Aralkylamine dehydrogenase light chain 2q7qD00
3SJLC 2AGZD 1MAEL 2AH1D 2I0TD 3SLEC 2IUPD 2HJBD 4L1QC 1MG2B 4O1QC 2AGXD 2J57K 3PXWC 4FA9C 2MADL 2AH0D 2HKRD 2HXCD 2I0RD 3RN0C 2IAAB 2GC4B 2BBKL 2H3XB 2H47B 2AGWD 2OIZD 4L3HC 2IUVD 3SXTC 3SWSC 4FAVC 3SVWC 2J56L 2OJYD 1MG3B 3RMZC 2Q7QD 3C75L 2OK4D 3L4OC 4FANC 2AGLD 2OK6D 3ORVC 3PXSC 2GC7B 4L3GC 3RN1C 2IURD 4FA5C 2AGYD 4Y5RC 2MTAL 1MDAL 1MAFL 2IUQD 3L4MC 4FB1C 3RLMC 4FA4C 2HKMD 2J55L 3PXTC 2HJ4D 4FA1C 2I0SD 4K3IC
chains in the Genus database with same CATH superfamily
3SJLC 2AGZD 1MAEL 2AH1D 2I0TD 3SLEC 2IUPD 2HJBD 4L1QC 1MG2B 4O1QC 2AGXD 2J57K 3PXWC 4FA9C 2MADL 2AH0D 2HKRD 2HXCD 2I0RD 3RN0C 2IAAB 2GC4B 2BBKL 2H3XB 2H47B 2AGWD 2OIZD 4L3HC 2IUVD 3SXTC 3SWSC 4FAVC 3SVWC 2J56L 2OJYD 1MG3B 3RMZC 2Q7QD 3C75L 2OK4D 3L4OC 4FANC 2AGLD 2OK6D 3ORVC 3PXSC 2GC7B 4L3GC 3RN1C 2IURD 4FA5C 2AGYD 4Y5RC 2MTAL 1MDAL 1MAFL 2IUQD 3L4MC 4FB1C 3RLMC 4FA4C 2HKMD 2J55L 3PXTC 2HJ4D 4FA1C 2I0SD 4K3IC
chains in the Genus database with same CATH topology
3SJLC 2AGZD 1MAEL 2AH1D 2I0TD 3SLEC 2IUPD 2HJBD 4L1QC 1MG2B 4O1QC 2AGXD 2J57K 3PXWC 4FA9C 2MADL 2AH0D 2HKRD 2HXCD 2I0RD 3RN0C 2IAAB 2GC4B 2BBKL 2H3XB 2H47B 2AGWD 2OIZD 4L3HC 2IUVD 3SXTC 3SWSC 4FAVC 3SVWC 2J56L 2OJYD 1MG3B 3RMZC 2Q7QD 3C75L 2OK4D 3L4OC 4FANC 2AGLD 2OK6D 3ORVC 3PXSC 2GC7B 4L3GC 3RN1C 2IURD 4FA5C 2AGYD 4Y5RC 2MTAL 1MDAL 1MAFL 2IUQD 3L4MC 4FB1C 3RLMC 4FA4C 2HKMD 2J55L 3PXTC 2HJ4D 4FA1C 2I0SD 4K3IC
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3SJL C;  2AGZ D;  1MAE L;  2AH1 D;  2I0T D;  3SLE C;  2IUP D;  2HJB D;  4L1Q C;  1MG2 B;  4O1Q C;  2AGX D;  2J57 K;  3PXW C;  4FA9 C;  2MAD L;  2AH0 D;  2HKR D;  2HXC D;  2I0R D;  3RN0 C;  2IAA B;  2GC4 B;  2BBK L;  2H3X B;  2H47 B;  2AGW D;  2OIZ D;  4L3H C;  2IUV D;  3SXT C;  3SWS C;  4FAV C;  3SVW C;  2J56 L;  2OJY D;  1MG3 B;  3RMZ C;  2Q7Q D;  3C75 L;  2OK4 D;  3L4O C;  4FAN C;  2AGL D;  2OK6 D;  3ORV C;  3PXS C;  2GC7 B;  4L3G C;  3RN1 C;  2IUR D;  4FA5 C;  2AGY D;  4Y5R C;  2MTA L;  1MDA L;  1MAF L;  2IUQ D;  3L4M C;  4FB1 C;  3RLM C;  4FA4 C;  2HKM D;  2J55 L;  3PXT C;  2HJ4 D;  4FA1 C;  2I0S D;  4K3I C; 
#chains in the Genus database with same CATH topology
 3SJL C;  2AGZ D;  1MAE L;  2AH1 D;  2I0T D;  3SLE C;  2IUP D;  2HJB D;  4L1Q C;  1MG2 B;  4O1Q C;  2AGX D;  2J57 K;  3PXW C;  4FA9 C;  2MAD L;  2AH0 D;  2HKR D;  2HXC D;  2I0R D;  3RN0 C;  2IAA B;  2GC4 B;  2BBK L;  2H3X B;  2H47 B;  2AGW D;  2OIZ D;  4L3H C;  2IUV D;  3SXT C;  3SWS C;  4FAV C;  3SVW C;  2J56 L;  2OJY D;  1MG3 B;  3RMZ C;  2Q7Q D;  3C75 L;  2OK4 D;  3L4O C;  4FAN C;  2AGL D;  2OK6 D;  3ORV C;  3PXS C;  2GC7 B;  4L3G C;  3RN1 C;  2IUR D;  4FA5 C;  2AGY D;  4Y5R C;  2MTA L;  1MDA L;  1MAF L;  2IUQ D;  3L4M C;  4FB1 C;  3RLM C;  4FA4 C;  2HKM D;  2J55 L;  3PXT C;  2HJ4 D;  4FA1 C;  2I0S D;  4K3I C; 
#chains in the Genus database with same CATH homology
 3SJL C;  2AGZ D;  1MAE L;  2AH1 D;  2I0T D;  3SLE C;  2IUP D;  2HJB D;  4L1Q C;  1MG2 B;  4O1Q C;  2AGX D;  2J57 K;  3PXW C;  4FA9 C;  2MAD L;  2AH0 D;  2HKR D;  2HXC D;  2I0R D;  3RN0 C;  2IAA B;  2GC4 B;  2BBK L;  2H3X B;  2H47 B;  2AGW D;  2OIZ D;  4L3H C;  2IUV D;  3SXT C;  3SWS C;  4FAV C;  3SVW C;  2J56 L;  2OJY D;  1MG3 B;  3RMZ C;  2Q7Q D;  3C75 L;  2OK4 D;  3L4O C;  4FAN C;  2AGL D;  2OK6 D;  3ORV C;  3PXS C;  2GC7 B;  4L3G C;  3RN1 C;  2IUR D;  4FA5 C;  2AGY D;  4Y5R C;  2MTA L;  1MDA L;  1MAF L;  2IUQ D;  3L4M C;  4FB1 C;  3RLM C;  4FA4 C;  2HKM D;  2J55 L;  3PXT C;  2HJ4 D;  4FA1 C;  2I0S D;  4K3I C; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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