2Q7QD

Crystal structure of alcaligenes faecalis aadh in complex with p-chlorobenzylamine.
Total Genus 24
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
24
Knots found
sequence length
109
structure length
108
Chain Sequence
b'EVNSCDYWRHCAVDGFLCSCCGGTTTTCPPGSTPSPISIGTCHNPHDGKDYLISYHDCCGKTACGRCQCNTQTRERPGYEFFLHNDVNWCMANENSTFHCTTSVLVGL'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Isotope effects reveal that para-substituted benzylamines are poor reactivity probes of the quinoprotein mechanism for aromatic amine dehydrogenase.
pubmed doi rcsb
molecule keywords Aralkylamine dehydrogenase light chain
source organism Alcaligenes faecalis
molecule tags Oxidoreductase
total genus 24
structure length 108
sequence length 109
chains with identical sequence H
other databases KnotProt 2.0: K
ec nomenclature ec 1.4.9.2: Aralkylamine dehydrogenase (azurin).
pdb deposition date 2007-06-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
D PF02975 Me-amine-dh_L Methylamine dehydrogenase, L chain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.30.10 Mainly Beta Sandwich Electron Transport Ethylamine Dehydrogenase Methylamine/Aralkylamine dehydrogenase light chain 2q7qD00
3SJLC 2AH1D 3PXWC 4FB1C 1MG3B 3C75L 2AGWD 3PXTC 4O1QC 2IURD 2HJ4D 4FA1C 2HJBD 3SLEC 1MAFL 2IAAB 3RN1C 4L1QC 2HKMD 4FAVC 1MG2B 2MADL 2AGYD 2AGZD 2HXCD 2I0TD 2J56L 4FA4C 2I0SD 4L3HC 2AGXD 2OJYD 3ORVC 2J55L 1MDAL 4K3IC 2GC7B 2IUVD 4L3GC 2AH0D 2H3XB 3PXSC 3SXTC 4FA5C 4FA9C 2J57K 4Y5RC 2IUQD 2IUPD 2MTAL 2Q7QD 3SVWC 2AGLD 2I0RD 2OK4D 3RMZC 3RN0C 4FANC 2OK6D 3SWSC 3L4OC 2BBKL 3RLMC 3L4MC 2OIZD 2H47B 2GC4B 1MAEL 2HKRD
chains in the Genus database with same CATH superfamily
3SJLC 2AH1D 3PXWC 4FB1C 1MG3B 3C75L 2AGWD 3PXTC 4O1QC 2IURD 2HJ4D 4FA1C 2HJBD 3SLEC 1MAFL 2IAAB 3RN1C 4L1QC 2HKMD 4FAVC 1MG2B 2MADL 2AGYD 2AGZD 2HXCD 2I0TD 2J56L 4FA4C 2I0SD 4L3HC 2AGXD 2OJYD 3ORVC 2J55L 1MDAL 4K3IC 2GC7B 2IUVD 4L3GC 2AH0D 2H3XB 3PXSC 3SXTC 4FA5C 4FA9C 2J57K 4Y5RC 2IUQD 2IUPD 2MTAL 2Q7QD 3SVWC 2AGLD 2I0RD 2OK4D 3RMZC 3RN0C 4FANC 2OK6D 3SWSC 3L4OC 2BBKL 3RLMC 3L4MC 2OIZD 2H47B 2GC4B 1MAEL 2HKRD
chains in the Genus database with same CATH topology
3SJLC 2AH1D 3PXWC 4FB1C 1MG3B 3C75L 2AGWD 3PXTC 4O1QC 2IURD 2HJ4D 4FA1C 2HJBD 3SLEC 1MAFL 2IAAB 3RN1C 4L1QC 2HKMD 4FAVC 1MG2B 2MADL 2AGYD 2AGZD 2HXCD 2I0TD 2J56L 4FA4C 2I0SD 4L3HC 2AGXD 2OJYD 3ORVC 2J55L 1MDAL 4K3IC 2GC7B 2IUVD 4L3GC 2AH0D 2H3XB 3PXSC 3SXTC 4FA5C 4FA9C 2J57K 4Y5RC 2IUQD 2IUPD 2MTAL 2Q7QD 3SVWC 2AGLD 2I0RD 2OK4D 3RMZC 3RN0C 4FANC 2OK6D 3SWSC 3L4OC 2BBKL 3RLMC 3L4MC 2OIZD 2H47B 2GC4B 1MAEL 2HKRD
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3SJL C;  2AH1 D;  3PXW C;  4FB1 C;  1MG3 B;  3C75 L;  2AGW D;  3PXT C;  4O1Q C;  2IUR D;  2HJ4 D;  4FA1 C;  2HJB D;  3SLE C;  1MAF L;  2IAA B;  3RN1 C;  4L1Q C;  2HKM D;  4FAV C;  1MG2 B;  2MAD L;  2AGY D;  2AGZ D;  2HXC D;  2I0T D;  2J56 L;  4FA4 C;  2I0S D;  4L3H C;  2AGX D;  2OJY D;  3ORV C;  2J55 L;  1MDA L;  4K3I C;  2GC7 B;  2IUV D;  4L3G C;  2AH0 D;  2H3X B;  3PXS C;  3SXT C;  4FA5 C;  4FA9 C;  2J57 K;  4Y5R C;  2IUQ D;  2IUP D;  2MTA L;  2Q7Q D;  3SVW C;  2AGL D;  2I0R D;  2OK4 D;  3RMZ C;  3RN0 C;  4FAN C;  2OK6 D;  3SWS C;  3L4O C;  2BBK L;  3RLM C;  3L4M C;  2OIZ D;  2H47 B;  2GC4 B;  1MAE L;  2HKR D; 
#chains in the Genus database with same CATH topology
 3SJL C;  2AH1 D;  3PXW C;  4FB1 C;  1MG3 B;  3C75 L;  2AGW D;  3PXT C;  4O1Q C;  2IUR D;  2HJ4 D;  4FA1 C;  2HJB D;  3SLE C;  1MAF L;  2IAA B;  3RN1 C;  4L1Q C;  2HKM D;  4FAV C;  1MG2 B;  2MAD L;  2AGY D;  2AGZ D;  2HXC D;  2I0T D;  2J56 L;  4FA4 C;  2I0S D;  4L3H C;  2AGX D;  2OJY D;  3ORV C;  2J55 L;  1MDA L;  4K3I C;  2GC7 B;  2IUV D;  4L3G C;  2AH0 D;  2H3X B;  3PXS C;  3SXT C;  4FA5 C;  4FA9 C;  2J57 K;  4Y5R C;  2IUQ D;  2IUP D;  2MTA L;  2Q7Q D;  3SVW C;  2AGL D;  2I0R D;  2OK4 D;  3RMZ C;  3RN0 C;  4FAN C;  2OK6 D;  3SWS C;  3L4O C;  2BBK L;  3RLM C;  3L4M C;  2OIZ D;  2H47 B;  2GC4 B;  1MAE L;  2HKR D; 
#chains in the Genus database with same CATH homology
 3SJL C;  2AH1 D;  3PXW C;  4FB1 C;  1MG3 B;  3C75 L;  2AGW D;  3PXT C;  4O1Q C;  2IUR D;  2HJ4 D;  4FA1 C;  2HJB D;  3SLE C;  1MAF L;  2IAA B;  3RN1 C;  4L1Q C;  2HKM D;  4FAV C;  1MG2 B;  2MAD L;  2AGY D;  2AGZ D;  2HXC D;  2I0T D;  2J56 L;  4FA4 C;  2I0S D;  4L3H C;  2AGX D;  2OJY D;  3ORV C;  2J55 L;  1MDA L;  4K3I C;  2GC7 B;  2IUV D;  4L3G C;  2AH0 D;  2H3X B;  3PXS C;  3SXT C;  4FA5 C;  4FA9 C;  2J57 K;  4Y5R C;  2IUQ D;  2IUP D;  2MTA L;  2Q7Q D;  3SVW C;  2AGL D;  2I0R D;  2OK4 D;  3RMZ C;  3RN0 C;  4FAN C;  2OK6 D;  3SWS C;  3L4O C;  2BBK L;  3RLM C;  3L4M C;  2OIZ D;  2H47 B;  2GC4 B;  1MAE L;  2HKR D; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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