1P50 | Genus

Total Genus 122

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	122
sequence length	356
structure length	356
Chain Sequence	VDQATLDKLEAGFKKLQEASDCKSLLKKHLTKDVFDSIKNKKTGMGATLLDVIQSGVENLDSGVGIYAPDAESYRTFGPLFDPIIDDYHGGFKLTDKHPPKQWGDINTLVGLDPAGQFIISTRVRCGRSLQGYPFNPCLTAEQYKEMEEKVSSTLSSMEDELKGTYYPLTGMSKATQQQLIDDHFLFKEGDRFLQTANACRYWPTGRGIFHNDAKTFLVWVNEQDHLRIISMQKGGDLKTVYKRLVTAVDNIESKLPFSHDDRFGFLTFCPTNLGTTMRASVHIQLPKLAKDRKVLEDIASKFNLQVRGTRGEHTESEGGVYDISNKRRLGLTEYQAVREMQDGILEMIKMEKAAA

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 356 atoms

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356 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

publication title	The putative catalytic bases have, at most, an accessory role in the mechanism of arginine kinase. pubmed doi rcsb
molecule keywords	Arginine kinase
molecule tags	Transferase
source organism	Limulus polyphemus
total genus	122
structure length	356
sequence length	356
ec nomenclature	ec 2.7.3.3: Arginine kinase.
pdb deposition date	2003-04-24

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00217	ATP-gua_Ptrans	ATP:guanido phosphotransferase, C-terminal catalytic domain
A	PF02807	ATP-gua_PtransN	ATP:guanido phosphotransferase, N-terminal domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.10.135.10	Mainly Alpha	Orthogonal Bundle	Transferase Creatine Kinase; Chain A, domain 1	ATP:guanido phosphotransferase, N-terminal domain	1p50A01
3.30.590.10	Alpha Beta	2-Layer Sandwich	Creatine Kinase; Chain A, domain 2	Glutamine synthetase/guanido kinase, catalytic domain	1p50A02

3M10A 5J99A 1HTQA 1F1HA 4HPPA 1QH4A 1U6RA 1VRPA 4BG4B 1F52A 3L2EB 3JQ3A 4S17A 2WGSA 1M15A 4GW0A 4RF7A 2BVCA 1FPYA 1LGRA 2J1QA 3JU6A 4Q2RA 4LNKA 4XYCA 4LNFA 1BG0A 4LNIA 4BG4A 4RF6A 4Z9MA 2LGSA 3NG0A 3DREA 1P50A 3L2EA 4BHLA 2CRKA 5J9AA 1HTOA 1QK1A 1P52A 3ZXRA 4GVZA 2WHIA 4LNOA 1G0WA 4RF8A 3L2DA 1I0EA 4AM1A 1SD0A 2GLSA 3DRBA 3JU5A 4GW2A 4ACFA 4S0RA 3JPZA 4RF9A 4LNNA 4GVYA 1CRKA 1RL9A 3B6RA 3ZXVA
chains in the Genus database with same CATH superfamily

1F1HA 1U6RA 4BG4B 3FKYA 1M15A 4GW0A 2BVCA 1FPYA 2J1QA 4Q2RA 4BG4A 4Z9MA 2LGSA 3NG0A 2D33A 4GVZA 2QC8A 1R8GA 1V4GA 3JU5A 1HTQA 1F52A 4S17A 4RF7A 2UU7A 3JU6A 4LNKA 4XYCA 4BHLA 2CRKA 4BAXA 1P52A 1VA6A 2WHIA 1G0WA 4RF8A 4AM1A 2GLSA 4ACFA 3LVVA 4S0RA 3ZXRA 3ZXVA 2GWDA 4HPPA 1VRPA 3L2EB 3LN7A 1BG0A 2D3CA 3L2EA 1P50A 1QK1A 2OJWA 2D32A 4LNOA 3IG8A 2GWCA 1TT4A 3IG5A 3DRBA 4GW2A 2D3AA 4RF9A 4LNNA 1HTOA 3B6RA 2D3BA 3M10A 5J99A 1QH4A 3JQ3A 2WGSA 3LVWA 1LGRA 4LNFA 4LNIA 4RF6A 3DREA 3LN6A 5J9AA 3L2DA 1I0EA 1SD0A 3JPZA 3NZTA 4GVYA 1CRKA 1RL9A
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 3M10 A;  5J99 A;  1HTQ A;  1F1H A;  4HPP A;  1QH4 A;  1U6R A;  1VRP A;  4BG4 B;  1F52 A;  3L2E B;  3JQ3 A;  4S17 A;  2WGS A;  1M15 A;  4GW0 A;  4RF7 A;  2BVC A;  1FPY A;  1LGR A;  2J1Q A;  3JU6 A;  4Q2R A;  4LNK A;  4XYC A;  4LNF A;  1BG0 A;  4LNI A;  4BG4 A;  4RF6 A;  4Z9M A;  2LGS A;  3NG0 A;  3DRE A;  1P50 A;  3L2E A;  4BHL A;  2CRK A;  5J9A A;  1HTO A;  1QK1 A;  1P52 A;  3ZXR A;  4GVZ A;  2WHI A;  4LNO A;  1G0W A;  4RF8 A;  3L2D A;  1I0E A;  4AM1 A;  1SD0 A;  2GLS A;  3DRB A;  3JU5 A;  4GW2 A;  4ACF A;  4S0R A;  3JPZ A;  4RF9 A;  4LNN A;  4GVY A;  1CRK A;  1RL9 A;  3B6R A;  3ZXV A; 
#chains in the Genus database with same CATH topology
 1F1H A;  1U6R A;  4BG4 B;  3FKY A;  1M15 A;  4GW0 A;  2BVC A;  1FPY A;  2J1Q A;  4Q2R A;  4BG4 A;  4Z9M A;  2LGS A;  3NG0 A;  2D33 A;  4GVZ A;  2QC8 A;  1R8G A;  1V4G A;  3JU5 A;  1HTQ A;  1F52 A;  4S17 A;  4RF7 A;  2UU7 A;  3JU6 A;  4LNK A;  4XYC A;  4BHL A;  2CRK A;  4BAX A;  1P52 A;  1VA6 A;  2WHI A;  1G0W A;  4RF8 A;  4AM1 A;  2GLS A;  4ACF A;  3LVV A;  4S0R A;  3ZXR A;  3ZXV A;  2GWD A;  4HPP A;  1VRP A;  3L2E B;  3LN7 A;  1BG0 A;  2D3C A;  3L2E A;  1P50 A;  1QK1 A;  2OJW A;  2D32 A;  4LNO A;  3IG8 A;  2GWC A;  1TT4 A;  3IG5 A;  3DRB A;  4GW2 A;  2D3A A;  4RF9 A;  4LNN A;  1HTO A;  3B6R A;  2D3B A;  3M10 A;  5J99 A;  1QH4 A;  3JQ3 A;  2WGS A;  3LVW A;  1LGR A;  4LNF A;  4LNI A;  4RF6 A;  3DRE A;  3LN6 A;  5J9A A;  3L2D A;  1I0E A;  1SD0 A;  3JPZ A;  3NZT A;  4GVY A;  1CRK A;  1RL9 A; 
#chains in the Genus database with same CATH homology
 3M10 A;  5J99 A;  1HTQ A;  1F1H A;  4HPP A;  1QH4 A;  1U6R A;  1VRP A;  4BG4 B;  1F52 A;  3L2E B;  3JQ3 A;  4S17 A;  2WGS A;  1M15 A;  4GW0 A;  4RF7 A;  2BVC A;  1FPY A;  1LGR A;  2J1Q A;  3JU6 A;  4Q2R A;  4LNK A;  4XYC A;  4LNF A;  1BG0 A;  4LNI A;  4BG4 A;  4RF6 A;  4Z9M A;  2LGS A;  3NG0 A;  3DRE A;  1P50 A;  3L2E A;  4BHL A;  2CRK A;  5J9A A;  1HTO A;  1QK1 A;  1P52 A;  3ZXR A;  4GVZ A;  2WHI A;  4LNO A;  1G0W A;  4RF8 A;  3L2D A;  1I0E A;  4AM1 A;  1SD0 A;  2GLS A;  3DRB A;  3JU5 A;  4GW2 A;  4ACF A;  4S0R A;  3JPZ A;  4RF9 A;  4LNN A;  4GVY A;  1CRK A;  1RL9 A;  3B6R A;  3ZXV A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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1P50A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations