The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
105
|
sequence length |
368
|
structure length |
352
|
Chain Sequence |
LPDFHVSEPFTLGIELEMQVVNPPGYDLSQDSSMLIDAVKNKITAGEVKHDITESMLELATDVCRDINQAAGQFSAMQKVVLQAATDHHLEICGGGTHPFQKWNFGYLIQQATVFGQHVHVGCASGDDAIYLLHGLSRFVPHFIALSAASPYMQGTDTRFASSRPNIFSAFPDNGPMPWVSNWQQFEALFRCLSYTTMIDSIKDLHWDIRPSPHFGTVEVRVMDTPLTLSHAVNMAGLIQATAHWLLTERPFKHQEKDYLLYKFNRFQACRYGLEGVITDPHTGDRRPLTEDTLRLLEKIAPSAHKIGASSAIEALHRQVVSGLNEAQLMRDFVADGGSLIGLVKKHCEIWA
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
YbdK is a carboxylate-amine ligase with a gamma-glutamyl:Cysteine ligase activity: crystal structure and enzymatic assays
pubmed doi rcsb |
| molecule keywords |
Hypothetical protein ybdK
|
| molecule tags |
Ligase
|
| source organism |
Escherichia coli
|
| total genus |
105
|
| structure length |
352
|
| sequence length |
368
|
| chains with identical sequence |
B
|
| ec nomenclature |
ec
6.3.2.2: Glutamate--cysteine ligase. |
| pdb deposition date | 2003-10-24 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF04107 | GCS2 | Glutamate-cysteine ligase family 2(GCS2) |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 2-Layer Sandwich | Creatine Kinase; Chain A, domain 2 | Creatine Kinase; Chain A, domain 2 |
#chains in the Genus database with same CATH superfamily 1V4G A; 3LN7 A; 1VA6 A; 3LN6 A; 1TT4 A; 2GWD A; 2D32 A; 2GWC A; 3NZT A; 1R8G A; 2D33 A; #chains in the Genus database with same CATH topology 4HPP A; 2BVC A; 3FKY A; 2D3C A; 1RL9 A; 4S0R A; 4S17 A; 3DRE A; 1F52 A; 3DRB A; 2QC8 A; 1I0E A; 3JU5 A; 1P50 A; 4LNI A; 3IG5 A; 4GVZ A; 1SD0 A; 3NG0 A; 4LNK A; 2CRK A; 3ZXR A; 3NZT A; 1F1H A; 5J99 A; 3IG8 A; 5J9A A; 1BG0 A; 4Z9M A; 1VRP A; 4XYC A; 1P52 A; 4BHL A; 3L2E B; 4ACF A; 4LNO A; 4LNN A; 2WHI A; 1VA6 A; 1G0W A; 3B6R A; 2WGS A; 4RF7 A; 1QK1 A; 4BG4 B; 4Q2R A; 3JQ3 A; 3L2E A; 3LVW A; 2D3A A; 4LNF A; 1R8G A; 2OJW A; 3JPZ A; 2GLS A; 4RF6 A; 2J1Q A; 2D32 A; 3LN7 A; 3L2D A; 4GVY A; 2UU7 A; 1CRK A; 3LN6 A; 1M15 A; 1TT4 A; 3ZXV A; 1FPY A; 3M10 A; 4BAX A; 2D3B A; 4AM1 A; 2GWD A; 1HTO A; 1QH4 A; 1U6R A; 1LGR A; 1HTQ A; 4GW0 A; 4GW2 A; 4BG4 A; 4RF9 A; 3LVV A; 3JU6 A; 2GWC A; 2LGS A; 2D33 A; 1V4G A; 4RF8 A; #chains in the Genus database with same CATH homology 2D3A A; 3IG8 A; 3FKY A; 2D3C A; 1R8G A; 2OJW A; 2QC8 A; 2D32 A; 3LN7 A; 3LVV A; 1VA6 A; 2UU7 A; 3LN6 A; 1TT4 A; 3IG5 A; 4BAX A; 2GWC A; 2D33 A; 2D3B A; 1V4G A; 2GWD A; 3NZT A; 3LVW A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
