1R8Q | Genus

Total Genus 72

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	72
sequence length	191
structure length	191
Chain Sequence	SKTLQRNRKMAMGRKKFNMDPKKGIQFLVENELLQNTPEEIARFLYKGEGLNKTAIGDYLGEREELNLAVLHAFVDLHEFTDLNLVQALRQFLWSFRLPGEAQKIDRMMEAFAQRYCLCNPGVFQSTDTCYVLSYSVIMLNTDLHNPNVRDKMGLERFVAMNRGINEGGDLPEELLRNLYDSIRNEPFKIP

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 191 atoms

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1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

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191 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Protein transport/exchange factor
source organism	Bos taurus
publication title	Structural snapshots of the mechanism and inhibition of a guanine nucleotide exchange factor pubmed doi rcsb
molecule keywords	ADP-ribosylation factor 1
total genus	72
structure length	191
sequence length	191
chains with identical sequence	F
ec nomenclature
pdb deposition date	2003-10-28

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
E	PF01369	Sec7	Sec7 domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.10.220.20	Mainly Alpha	Orthogonal Bundle	Annexin V; domain 1	Annexin V; domain 1	1r8qE01
1.10.1000.11	Mainly Alpha	Orthogonal Bundle	Arf Nucleotide-binding Site Opener; domain 2	Arf Nucleotide-binding Site Opener,domain 2	1r8qE02

4C0AA 1KU1A 3SWVA 1R8SE 3L8NA 4JWLA 1R8QE 4A4PA 1R8ME 4JMIA 4OIYA 4C7PA 2R0DA 4L5MA 1BC9A 4JXHA 3LTLA 4JMOA 1S9DE 1XSZA 4D7RA 1PBVA 1XT0B 2R09A 4Z21A 1RE0B 4D7QA
chains in the Genus database with same CATH superfamily

4C0AA 2H0KA 3BRXA 1N44A 2HYVA 1AVRA 3AO0A 4C7PA 1N42A 1HM6A 4L5MA 3ABOA 1DK5A 1BC3A 1AIIA 2HYUA 4D7RA 3USWA 1PBVA 1Q8DA 1R4AE 1AXNA 3TW5A 4Z21A 1A8AA 1BC1A 2QEZA 1QC7A 1LKVX 1HVEA 1YCNA 1R8SE 1BC0A 4FQ0C 4JWLA 3ANYA 4EVFA 1W3WA 2H0MA 4MDVA 1C1KA 1HVGA 1ANXA 1AVHA 4KN7X 2HSNA 4FHRB 1HVDA 1AOWA 2K6XA 2IICA 4KMUX 4JK1X 1ANNA 4JXHA 4JMOA 1DM5A 4X9PA 1SAVA 1HAKA 1RE0B 1UPTB 4D7QA 1XJLA 3SWVA 3L8NA 1G5NA 1R8QE 4MDUA 4Q2SA 1MCXA 4A4PA 1R8ME 1BCWA 4OIYA 1ALAA 1A8BA 2OY9A 2ZOCA 3LTLA 1W45A 2IE7A 3AJCA 1BO9A 1S9DE 1XSZA 2R09A 2Q4CA 1BCZA 1I4AA 3HJLA 4KN4X 2ZHJA 2RANA 1KU1A 1ANWA 2IE6A 2XO3A 2XO2A 2H0LA 3ABRA 1W7BA 4JMIA 1AVCA 1YIIA 2HYWA 1YJ0A 1N00A 2R0DA 3USYA 3ABSA 1BCYA 1HVFA 1BC9A 4EVHA 2II2A 2VXGA 4HREA 2ZHIA 1AEIA 3SOHB 1N41A 3ABQA 1XT0B 1M9IA 1YGMA
chains in the Genus database with same CATH topology

4C0AA 1QC7A 1KU1A 1LKVX 3SWVA 1R8SE 4FQ0C 3L8NA 4JWLA 1R8QE 4A4PA 1R8ME 4JMIA 4OIYA 4C7PA 4KN7X 2HSNA 4FHRB 3USYA 2R0DA 4L5MA 2K6XA 1BC9A 4KMUX 4JK1X 4JXHA 3LTLA 4JMOA 3AJCA 1S9DE 1XSZA 3SOHB 4D7RA 3USWA 1PBVA 1Q8DA 1XT0B 2R09A 3TW5A 4Z21A 3HJLA 4KN4X 1RE0B 4D7QA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 4C0A A;  1KU1 A;  3SWV A;  1R8S E;  3L8N A;  4JWL A;  1R8Q E;  4A4P A;  1R8M E;  4JMI A;  4OIY A;  4C7P A;  2R0D A;  4L5M A;  1BC9 A;  4JXH A;  3LTL A;  4JMO A;  1S9D E;  1XSZ A;  4D7R A;  1PBV A;  1XT0 B;  2R09 A;  4Z21 A;  1RE0 B;  4D7Q A; 
#chains in the Genus database with same CATH topology
 4C0A A;  2H0K A;  3BRX A;  1N44 A;  2HYV A;  1AVR A;  3AO0 A;  4C7P A;  1N42 A;  1HM6 A;  4L5M A;  3ABO A;  1DK5 A;  1BC3 A;  1AII A;  2HYU A;  4D7R A;  3USW A;  1PBV A;  1Q8D A;  1R4A E;  1AXN A;  3TW5 A;  4Z21 A;  1A8A A;  1BC1 A;  2QEZ A;  1QC7 A;  1LKV X;  1HVE A;  1YCN A;  1R8S E;  1BC0 A;  4FQ0 C;  4JWL A;  3ANY A;  4EVF A;  1W3W A;  2H0M A;  4MDV A;  1C1K A;  1HVG A;  1ANX A;  1AVH A;  4KN7 X;  2HSN A;  4FHR B;  1HVD A;  1AOW A;  2K6X A;  2IIC A;  4KMU X;  4JK1 X;  1ANN A;  4JXH A;  4JMO A;  1DM5 A;  4X9P A;  1SAV A;  1HAK A;  1RE0 B;  1UPT B;  4D7Q A;  1XJL A;  3SWV A;  3L8N A;  1G5N A;  1R8Q E;  4MDU A;  4Q2S A;  1MCX A;  4A4P A;  1R8M E;  1BCW A;  4OIY A;  1ALA A;  1A8B A;  2OY9 A;  2ZOC A;  3LTL A;  1W45 A;  2IE7 A;  3AJC A;  1BO9 A;  1S9D E;  1XSZ A;  2R09 A;  2Q4C A;  1BCZ A;  1I4A A;  3HJL A;  4KN4 X;  2ZHJ A;  2RAN A;  1KU1 A;  1ANW A;  2IE6 A;  2XO3 A;  2XO2 A;  2H0L A;  3ABR A;  1W7B A;  4JMI A;  1AVC A;  1YII A;  2HYW A;  1YJ0 A;  1N00 A;  2R0D A;  3USY A;  3ABS A;  1BCY A;  1HVF A;  1BC9 A;  4EVH A;  2II2 A;  2VXG A;  4HRE A;  2ZHI A;  1AEI A;  3SOH B;  1N41 A;  3ABQ A;  1XT0 B;  1M9I A;  1YGM A; 
#chains in the Genus database with same CATH homology
 4C0A A;  1QC7 A;  1KU1 A;  1LKV X;  3SWV A;  1R8S E;  4FQ0 C;  3L8N A;  4JWL A;  1R8Q E;  4A4P A;  1R8M E;  4JMI A;  4OIY A;  4C7P A;  4KN7 X;  2HSN A;  4FHR B;  3USY A;  2R0D A;  4L5M A;  2K6X A;  1BC9 A;  4KMU X;  4JK1 X;  4JXH A;  3LTL A;  4JMO A;  3AJC A;  1S9D E;  1XSZ A;  3SOH B;  4D7R A;  3USW A;  1PBV A;  1Q8D A;  1XT0 B;  2R09 A;  3TW5 A;  4Z21 A;  3HJL A;  4KN4 X;  1RE0 B;  4D7Q A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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1R8QE

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations