1RE0 | Genus

Total Genus 75

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	75
sequence length	221
structure length	195
Chain Sequence	GSHMASDRKTEFILCVETFNEKAKKGIQMLIEKGFIDSDSNRDIASFLFLNNGRLNKKTIGLLLCDPKKTSLLKEFIDLFDFKGLRVDEAIRILLTKFRLPGESQQIERIVEAFSSKYSADQSVQPDADSVFVLSYSIIMLNTDSHNPQVKDHMTFDDYSNNLRGCYNGKDFPRWYLHKIYTSIKVKEIVMPEEH

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 195 atoms

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1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

Default Van der Waals type for model set to Jmol

195 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Protein transport
source organism	Homo sapiens
publication title	Crystal structure of ARF1*Sec7 complexed with Brefeldin A and its implications for the guanine nucleotide exchange mechanism. pubmed doi rcsb
molecule keywords	ADP-ribosylation factor 1
total genus	75
structure length	195
sequence length	221
ec nomenclature
pdb deposition date	2003-11-06

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
B	PF01369	Sec7	Sec7 domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.10.220.20	Mainly Alpha	Orthogonal Bundle	Annexin V; domain 1	Annexin V; domain 1	1re0B01
1.10.1000.11	Mainly Alpha	Orthogonal Bundle	Arf Nucleotide-binding Site Opener; domain 2	Arf Nucleotide-binding Site Opener,domain 2	1re0B02

1R8ME 4L5MA 4D7QA 1KU1A 4A4PA 3SWVA 1R8SE 3LTLA 4C7PA 4OIYA 4D7RA 1XSZA 2R09A 4JXHA 2R0DA 1R8QE 1BC9A 4JMOA 4Z21A 1PBVA 3L8NA 1RE0B 4JMIA 4JWLA 1S9DE 4C0AA 1XT0B
chains in the Genus database with same CATH superfamily

1R8ME 2XO2A 3ABQA 4D7QA 1BO9A 1AXNA 1Q8DA 1DM5A 1BC1A 4EVFA 1R8SE 1YJ0A 1BC0A 1N41A 4EVHA 1AOWA 1N42A 4C7PA 1XSZA 3ABOA 4X9PA 1UPTB 4Z21A 1BC9A 4Q2SA 2IE6A 1YGMA 4JWLA 1BCZA 3SOHB 2XO3A 1A8AA 1DK5A 2Q4CA 1N00A 1BCWA 4FHRB 1W45A 3HJLA 2II2A 2IE7A 3AJCA 3TW5A 1N44A 3ABSA 1BCYA 2H0KA 1AVRA 1HVGA 2R09A 4MDUA 1W3WA 2H0LA 1R8QE 4MDVA 1HVDA 3ABRA 1AEIA 1LKVX 2H0MA 1XT0B 2HSNA 2ZHIA 4JK1X 1ANXA 4L5MA 1C1KA 1AVCA 1ANWA 3BRXA 1AVHA 4A4PA 1ANNA 3SWVA 1R4AE 4KN4X 3ANYA 2IICA 3LTLA 1YIIA 1HM6A 1ALAA 4JXHA 1HVFA 2K6XA 2HYWA 2HYVA 1PBVA 2RANA 3USYA 1QC7A 1S9DE 2QEZA 1W7BA 4HREA 1SAVA 2OY9A 4C0AA 2ZHJA 3USWA 3AO0A 1HAKA 2HYUA 1MCXA 1KU1A 1M9IA 1HVEA 1A8BA 1G5NA 4OIYA 4D7RA 4KN7X 1AIIA 2R0DA 4JMOA 3L8NA 1RE0B 4JMIA 1BC3A 1I4AA 4FQ0C 2ZOCA 4KMUX 2VXGA 1YCNA 1XJLA
chains in the Genus database with same CATH topology

3USWA 2HSNA 4JK1X 1R8ME 4L5MA 4D7QA 1KU1A 4FHRB 3HJLA 4A4PA 1Q8DA 3AJCA 3TW5A 4KN4X 3SWVA 1R8SE 3LTLA 4C7PA 4OIYA 4D7RA 1XSZA 2R09A 4KN7X 4JXHA 2K6XA 1R8QE 1BC9A 2R0DA 4JMOA 4Z21A 1PBVA 3L8NA 1RE0B 4JMIA 3USYA 4JWLA 4FQ0C 1QC7A 1S9DE 4KMUX 1LKVX 3SOHB 4C0AA 1XT0B
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 1R8M E;  4L5M A;  4D7Q A;  1KU1 A;  4A4P A;  3SWV A;  1R8S E;  3LTL A;  4C7P A;  4OIY A;  4D7R A;  1XSZ A;  2R09 A;  4JXH A;  2R0D A;  1R8Q E;  1BC9 A;  4JMO A;  4Z21 A;  1PBV A;  3L8N A;  1RE0 B;  4JMI A;  4JWL A;  1S9D E;  4C0A A;  1XT0 B; 
#chains in the Genus database with same CATH topology
 1R8M E;  2XO2 A;  3ABQ A;  4D7Q A;  1BO9 A;  1AXN A;  1Q8D A;  1DM5 A;  1BC1 A;  4EVF A;  1R8S E;  1YJ0 A;  1BC0 A;  1N41 A;  4EVH A;  1AOW A;  1N42 A;  4C7P A;  1XSZ A;  3ABO A;  4X9P A;  1UPT B;  4Z21 A;  1BC9 A;  4Q2S A;  2IE6 A;  1YGM A;  4JWL A;  1BCZ A;  3SOH B;  2XO3 A;  1A8A A;  1DK5 A;  2Q4C A;  1N00 A;  1BCW A;  4FHR B;  1W45 A;  3HJL A;  2II2 A;  2IE7 A;  3AJC A;  3TW5 A;  1N44 A;  3ABS A;  1BCY A;  2H0K A;  1AVR A;  1HVG A;  2R09 A;  4MDU A;  1W3W A;  2H0L A;  1R8Q E;  4MDV A;  1HVD A;  3ABR A;  1AEI A;  1LKV X;  2H0M A;  1XT0 B;  2HSN A;  2ZHI A;  4JK1 X;  1ANX A;  4L5M A;  1C1K A;  1AVC A;  1ANW A;  3BRX A;  1AVH A;  4A4P A;  1ANN A;  3SWV A;  1R4A E;  4KN4 X;  3ANY A;  2IIC A;  3LTL A;  1YII A;  1HM6 A;  1ALA A;  4JXH A;  1HVF A;  2K6X A;  2HYW A;  2HYV A;  1PBV A;  2RAN A;  3USY A;  1QC7 A;  1S9D E;  2QEZ A;  1W7B A;  4HRE A;  1SAV A;  2OY9 A;  4C0A A;  2ZHJ A;  3USW A;  3AO0 A;  1HAK A;  2HYU A;  1MCX A;  1KU1 A;  1M9I A;  1HVE A;  1A8B A;  1G5N A;  4OIY A;  4D7R A;  4KN7 X;  1AII A;  2R0D A;  4JMO A;  3L8N A;  1RE0 B;  4JMI A;  1BC3 A;  1I4A A;  4FQ0 C;  2ZOC A;  4KMU X;  2VXG A;  1YCN A;  1XJL A; 
#chains in the Genus database with same CATH homology
 3USW A;  2HSN A;  4JK1 X;  1R8M E;  4L5M A;  4D7Q A;  1KU1 A;  4FHR B;  3HJL A;  4A4P A;  1Q8D A;  3AJC A;  3TW5 A;  4KN4 X;  3SWV A;  1R8S E;  3LTL A;  4C7P A;  4OIY A;  4D7R A;  1XSZ A;  2R09 A;  4KN7 X;  4JXH A;  2K6X A;  1R8Q E;  1BC9 A;  2R0D A;  4JMO A;  4Z21 A;  1PBV A;  3L8N A;  1RE0 B;  4JMI A;  3USY A;  4JWL A;  4FQ0 C;  1QC7 A;  1S9D E;  4KMU X;  1LKV X;  3SOH B;  4C0A A;  1XT0 B;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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1RE0B

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations